HHsearch alignment of GI: 254780882 and MMDB domain: 2oxo_A_

>2oxo_A (A:) Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=99.53  E-value=3.3e-14  Score=107.64  Aligned_cols=101  Identities=17%  Similarity=0.113  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r   13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL   92 (328)
Q Consensus        13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l   92 (328)
                      ++.+++++|++++.. +++|++|+++|...++.|..+++        ..++.+++..+|++|+.++.. +.+++|+++.+
T Consensus         2 t~~~~~~~~~~~~~~-~~~s~~T~~~y~~~~~~~~~~~~--------~~~i~~i~~~~i~~~~~~l~~-~~s~~t~~~~~   71 (103)
T 2oxo_A            2 TLHSWLDRYEKILAS-RGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGYID-EGKAASAKLIR   71 (103)
T ss_dssp             BHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHSC--------SCBGGGCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHH-HHCCHHHHHHH
T ss_conf             599999999999988-69999999999999999999985--------498666258999999999998-61605545679


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             4442222333210123222222222222221
Q gi|254780882|r   93 SGIKSFLKYLKKRKITTESNILNMRNLKKSN  123 (328)
Q Consensus        93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~~  123 (328)
                      ++|++||+||+++|+++.||+.+|+.||.++
T Consensus        72 ~~l~~~f~~a~~~g~i~~NP~~~i~~~k~~~  102 (103)
T 2oxo_A           72 STLSDAFREAIAEGHITTNHVAATRAAKSEV  102 (103)
T ss_dssp             HHHHHHHHHHHHTTSCSSCTTC---------
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC
T ss_conf             9999999999983985679342267678777