HHsearch alignment of GI: 254780882 and MMDB domain: 2oxo_A_
>2oxo_A (A:) Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=99.53 E-value=3.3e-14 Score=107.64 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
++.+++++|++++.. +++|++|+++|...++.|..+++ ..++.+++..+|++|+.++.. +.+++|+++.+
T Consensus 2 t~~~~~~~~~~~~~~-~~~s~~T~~~y~~~~~~~~~~~~--------~~~i~~i~~~~i~~~~~~l~~-~~s~~t~~~~~ 71 (103)
T 2oxo_A 2 TLHSWLDRYEKILAS-RGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGYID-EGKAASAKLIR 71 (103)
T ss_dssp BHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHSC--------SCBGGGCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHH-HHCCHHHHHHH
T ss_conf 599999999999988-69999999999999999999985--------498666258999999999998-61605545679
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 4442222333210123222222222222221
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~~ 123 (328)
++|++||+||+++|+++.||+.+|+.||.++
T Consensus 72 ~~l~~~f~~a~~~g~i~~NP~~~i~~~k~~~ 102 (103)
T 2oxo_A 72 STLSDAFREAIAEGHITTNHVAATRAAKSEV 102 (103)
T ss_dssp HHHHHHHHHHHHTTSCSSCTTC---------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC
T ss_conf 9999999999983985679342267678777