Query gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 328
No_of_seqs 176 out of 10042
Neff 8.9
Searched_HMMs 33803
Date Wed Jun 1 18:29:35 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780882.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1a0p_A Site-specific recombin 100.0 3.3E-30 9.9E-35 207.6 3.6 186 119-309 1-188 (190)
2 >1xo0_A Recombinase CRE; CRE r 100.0 4.7E-30 1.4E-34 206.6 3.3 173 127-303 2-196 (196)
3 >2a3v_A Site-specific recombin 99.9 2.9E-29 8.7E-34 201.7 0.9 121 118-309 1-121 (128)
4 >1z1b_A Integrase; protein-DNA 99.9 1.6E-26 4.8E-31 184.6 6.3 175 118-301 3-179 (190)
5 >1z19_A Integrase; protein-DNA 99.9 1.5E-26 4.4E-31 184.8 1.3 178 118-307 3-186 (190)
6 >1ae9_A Lambda integrase; DNA 99.9 3.7E-24 1.1E-28 169.8 3.9 170 127-305 2-173 (179)
7 >1aih_A HP1 integrase; DNA int 99.9 5.8E-23 1.7E-27 162.3 3.9 126 127-324 5-132 (133)
8 >1xo0_A Recombinase CRE; CRE r 99.8 9.6E-19 2.8E-23 136.0 6.6 112 15-133 2-113 (114)
9 >1a0p_A Site-specific recombin 99.7 1.7E-17 5E-22 128.2 7.0 98 14-117 2-99 (100)
10 >2kd1_A DNA integration/recomb 99.6 3.9E-16 1.1E-20 119.7 7.6 113 11-132 5-117 (118)
11 >2kiw_A INT protein; alpha, st 99.6 5.5E-15 1.6E-19 112.5 9.2 110 13-133 1-110 (111)
12 >2a3v_A Site-specific recombin 99.6 9.9E-15 2.9E-19 110.9 7.6 91 15-114 3-94 (94)
13 >2key_A Putative phage integra 99.5 5.9E-15 1.8E-19 112.3 4.9 107 8-124 4-111 (112)
14 >2oxo_A Integrase; DNA-binding 99.5 3.3E-14 9.8E-19 107.6 8.4 101 13-123 2-102 (103)
15 >2khq_A Integrase; all-alpha, 99.5 6.2E-14 1.8E-18 106.0 8.7 102 13-124 3-104 (110)
16 >2kob_A Uncharacterized protei 99.4 2.9E-13 8.7E-18 101.7 7.7 104 12-127 2-105 (108)
17 >2kkv_A Integrase; protein str 99.4 1.1E-12 3.1E-17 98.2 5.8 117 7-134 2-120 (121)
18 >1z19_A Integrase; protein-DNA 99.3 5.5E-12 1.6E-16 93.8 8.7 92 13-114 2-93 (93)
19 >1z1b_A Integrase; protein-DNA 99.3 6.2E-12 1.8E-16 93.5 8.5 92 13-114 1-92 (92)
20 >2kkp_A Phage integrase; SAM-l 99.3 1.4E-12 4E-17 97.6 2.4 89 34-129 2-90 (91)
21 >2kj8_A Putative prophage CPS- 99.2 2.2E-11 6.7E-16 90.0 7.1 112 11-132 4-117 (118)
22 >2kj9_A Integrase; DNA_BRE_C s 99.2 1.8E-11 5.3E-16 90.6 6.2 108 7-125 6-113 (118)
23 >2kj5_A Phage integrase; GFT N 99.2 1.6E-11 4.8E-16 90.8 5.1 107 8-125 3-109 (116)
24 >2khv_A Phage integrase; solut 99.2 2.5E-11 7.5E-16 89.6 5.8 101 13-124 2-103 (106)
25 >2a3v_A Site-specific recombin 95.1 0.039 1.2E-06 32.2 5.0 42 67-108 2-43 (94)
26 >2key_A Putative phage integra 93.7 0.19 5.5E-06 28.0 5.9 36 71-107 14-49 (112)
27 >1xo0_A Recombinase CRE; CRE r 93.3 0.21 6.1E-06 27.7 5.4 39 69-107 3-42 (114)
28 >1a0p_A Site-specific recombin 91.3 0.17 4.9E-06 28.3 3.0 39 69-107 4-43 (100)
29 >2a3v_A Site-specific recombin 89.5 0.14 4.1E-06 28.8 1.3 25 179-203 1-26 (27)
30 >1aih_A HP1 integrase; DNA int 84.3 0.29 8.7E-06 26.8 0.6 22 190-211 11-32 (37)
31 >3bhw_A Uncharacterized protei 57.5 12 0.00034 16.8 4.6 16 128-143 119-134 (209)
32 >2b9s_A Topoisomerase I-like p 44.1 16 0.00046 16.0 2.3 52 173-230 8-64 (66)
33 >2w3s_A Xanthine dehydrogenase 40.9 16 0.00047 15.9 2.0 36 169-205 60-97 (120)
34 >2f4q_A Type I topoisomerase, 37.7 18 0.00053 15.6 1.8 36 173-208 6-43 (54)
35 >1jko_C HIN recombinase, DNA-i 36.0 25 0.00075 14.7 3.5 41 256-301 2-42 (52)
36 >2nx9_A Oxaloacetate decarboxy 35.8 25 0.00075 14.7 3.1 87 234-320 180-284 (353)
37 >2qf7_A Pyruvate carboxylase p 27.8 23 0.00068 14.9 1.0 69 232-300 217-293 (388)
38 >2v6e_A Protelemorase; hairpin 26.9 12 0.00034 16.8 -0.6 18 282-299 95-112 (125)
39 >3hbl_A Pyruvate carboxylase; 21.7 22 0.00066 15.0 -0.0 71 229-299 215-293 (389)
No 1
>>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:101-290)
Probab=99.96 E-value=3.3e-30 Score=207.57 Aligned_cols=186 Identities=35% Similarity=0.434 Sum_probs=125.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 22221211111110156787765310135677577532012221001123322222112222233232203323785310
Q gi|254780882|r 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 (328)
Q Consensus 119 ~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R 198 (328)
||.+++.|++++.+|+.++++++.. ......||++||.+++.||||+||+++|+|+||+++.+.+.|..++.+..
T Consensus 1 PK~~~~~~~~lt~eel~~ll~~~~~-----~~~~~~r~~~i~~l~~~TGlR~~Ei~~L~~~di~~~~~~i~i~~~~~~~~ 75 (190)
T 1a0p_A 1 PKLPQRLPKDLSEAQVERLLQAPLI-----DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 75 (190)
T ss_dssp --------CCCCHHHHHHHHHCSCT-----TSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEEEEECSSSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHCCCCCCEEEECCCCCCCC
T ss_conf 6411023222222222222222210-----11336899999998656412045540584999054232899668898201
Q ss_pred CCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 0011221002343221110012-3446655432111122111000123567-8999768699988054179999999984
Q gi|254780882|r 199 IVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIR-QLRRYLGLPLSTTAHTLRHSFATHLLSN 276 (328)
Q Consensus 199 ~Vpi~~~~~~~l~~yl~~~~~~-~~~~~~~~lF~~~~g~~ls~~~i~~~~~-~~~~~~gi~~~~spH~lRHtfAt~ll~~ 276 (328)
..+...........+....... .......+.+......+........... ......+...++++|++||||||.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~Rht~~t~~~~~ 155 (190)
T 1a0p_A 76 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNH 155 (190)
T ss_dssp EEECCHHHHHHHHHHHHHTHHHHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred CCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 01001110035677776520211223456554432222321117899999999999468999877651889999999987
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHH
Q ss_conf 899889999837888789799996198999999
Q gi|254780882|r 277 GGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 (328)
Q Consensus 277 G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~ 309 (328)
|+|+..||++|||+|++||++|+|++++..+++
T Consensus 156 ~~~~~~i~~~lGH~s~~~T~~Y~~~~~~~~~~a 188 (190)
T 1a0p_A 156 GADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 188 (190)
T ss_dssp CSSCGGGSSCC--CCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 899999998818998899999977899999986
No 2
>>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:115-310)
Probab=99.96 E-value=4.7e-30 Score=206.62 Aligned_cols=173 Identities=13% Similarity=0.015 Sum_probs=139.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC-------CCCCCCCC
Q ss_conf 11111015678776531013567757753201222100112332222211222223323220332-------37853100
Q gi|254780882|r 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-------GKGDKIRI 199 (328)
Q Consensus 127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~-------gKg~K~R~ 199 (328)
++||.+|+.++++++.. .....+.|+++|+.|++.||||++|+++|+|+||+++.+.+.+. .++.+++.
T Consensus 2 r~lt~~e~~~l~~~~~~----~~~~~~~r~~~~~~l~~~tG~R~~Ei~~L~~~di~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (196)
T 1xo0_A 2 LAFERTDFDQVRSLMEN----SDRCQDIRNLAFLGIAYNTLLKIAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAGVE 77 (196)
T ss_dssp CCCCHHHHHHHHHHHSS----CCCHHHHHHHHHHHHHHHHCCCHHHHHHCBGGGEEEEETTEEEEEECCCCSSSSCSCEE
T ss_pred CCCHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEE
T ss_conf 43017888899986403----02467899999997422356667665310122222221001100000001245666212
Q ss_pred CCCCCCCHHHHHHHHHHHCCCC---------------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 0112210023432211100123---------------4466554321111221110001235678999768699988054
Q gi|254780882|r 200 VPLLPSVRKAILEYYDLCPFDL---------------NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHT 264 (328)
Q Consensus 200 Vpi~~~~~~~l~~yl~~~~~~~---------------~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~ 264 (328)
+|+.+.....+..+........ ......++|.+..|.+++...+...+++.+...|++.+++||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 157 (196)
T 1xo0_A 78 KALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHS 157 (196)
T ss_dssp EEECHHHHHHHHHHHHHHCGGGSTTSBSSCEECTTSCEECCSSCCCCHHHHHHHHHHHHHHHHCSCCCSCCSCSSCCTTH
T ss_pred EEHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 00478899999988887212211220122213432124543356431158888889999999999997288888878861
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCH
Q ss_conf 179999999984899889999837888789799996198
Q gi|254780882|r 265 LRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNS 303 (328)
Q Consensus 265 lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~ 303 (328)
|||||||.|+++|+|+..||++|||+|++||++|+|+.+
T Consensus 158 lRht~at~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~~d 196 (196)
T 1xo0_A 158 ARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD 196 (196)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCSSSSSHHHHSTTSG
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCH
T ss_conf 389999999987899999998819998899999972536
No 3
>>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:95-144,A:243-320)
Probab=99.95 E-value=2.9e-29 Score=201.67 Aligned_cols=121 Identities=38% Similarity=0.590 Sum_probs=108.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 22222121111111015678776531013567757753201222100112332222211222223323220332378531
Q gi|254780882|r 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 (328)
Q Consensus 118 ~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~ 197 (328)
.||.++++|++|+.+|+..+++++ ..||++|+.+||.||||+||+++|+|.
T Consensus 1 rpk~~~~lp~~l~~~e~~~ll~~~-----------~~r~~~~~~ll~~~GlR~~E~~~l~~s------------------ 51 (128)
T 2a3v_A 1 RSQLERKLPVVLTRDEIRRLLEIV-----------DPKHQLPIKLLYGSGLRLMECMRLRVN------------------ 51 (128)
T ss_dssp CCCCCCCCCCCCCHHHHHHHTTSS-----------CHHHHHHHHHHHHSCCCHHHHHTCBGC------------------
T ss_pred HHHHHCCCCCCCHHHHHHHCCCCC-----------CHHHHHHHHHHHHHCCCCCCCCCCHHC------------------
T ss_conf 100000122231035542000000-----------025888999987500122333331116------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 00011221002343221110012344665543211112211100012356789997686999880541799999999848
Q gi|254780882|r 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 (328)
Q Consensus 198 R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G 277 (328)
.++++++++++++++|++.+++||+|||||||+|+++|
T Consensus 52 ------------------------------------------~~~i~~~~k~~~~~agi~~~~~~H~lRHT~aT~l~~~G 89 (128)
T 2a3v_A 52 ------------------------------------------ETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVG 89 (128)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHTTCCCSCCCHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf ------------------------------------------89999999999998599999987114999999999878
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCHHHHHHH
Q ss_conf 99889999837888789799996198999999
Q gi|254780882|r 278 GDLRSIQSILGHFRLSTTQIYTNVNSKNGGDW 309 (328)
Q Consensus 278 ~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~~~ 309 (328)
+|+..||++|||+|++||++|+|++++..+++
T Consensus 90 ~~~~~i~~~lGHss~~~t~~Y~h~~~~~~~~~ 121 (128)
T 2a3v_A 90 ADIRTVQEQLGHTDVKTTQIYTHVLDRGASGV 121 (128)
T ss_dssp CCHHHHHHHHTCSSHHHHGGGCC------CCC
T ss_pred CCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999998848999899999884699899998
No 4
>>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} (A:167-356)
Probab=99.93 E-value=1.6e-26 Score=184.56 Aligned_cols=175 Identities=17% Similarity=0.143 Sum_probs=128.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 22222121111111015678776531013567757753201222100112332222211222223323220332378531
Q gi|254780882|r 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 (328)
Q Consensus 118 ~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~ 197 (328)
.||.+++.+++++.+|+.++++++.... .|++++|.|++.||||+||+++|+|+|||++...+.+...+.+.
T Consensus 3 k~k~~~~~~~~lt~eei~~l~~~~~~~~--------~~~~~~~~l~~~tGlR~~E~~~l~~~di~~~~~~~~~~~~~~~~ 74 (190)
T 1z1b_A 3 RAAKSKVRRSRLTADEYLKIYQAAESSP--------CWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKI 74 (190)
T ss_dssp CCCCCCCCBCCCCHHHHHHHHHHTTSSC--------HHHHHHHHHHHHHCCCHHHHTTCBGGGEETTEEEEECTTTCCEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCC--------CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 2223344332220366766420122455--------02457889998741244664333322122322222234443302
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHH
Q ss_conf 000112210023432211100123446655432111122111000123567899976869--998805417999999998
Q gi|254780882|r 198 RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLS 275 (328)
Q Consensus 198 R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~--~~~spH~lRHtfAt~ll~ 275 (328)
.. +........+.................++|++..|...........+.++.+.++.. ...++|.+||||||.|++
T Consensus 75 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~t~at~l~~ 153 (190)
T 1z1b_A 75 AI-PTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYE 153 (190)
T ss_dssp EE-ETTCEETTTTEEHHHHHHHHHHHTCSSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHHHHHHHHH
T ss_pred EC-CCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 12-55421025677654433310345777314115567757888999999999998599978899974828999999998
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 48998899998378887897999961
Q gi|254780882|r 276 NGGDLRSIQSILGHFRLSTTQIYTNV 301 (328)
Q Consensus 276 ~G~~~~~v~~~lGH~s~~tT~~Y~h~ 301 (328)
+|+|+..||++|||+|++||++|.+.
T Consensus 154 ~g~~~~~i~~~lGH~~~~~T~~yy~~ 179 (190)
T 1z1b_A 154 KQISDKFAQHLLGHKSDTMASQXRDD 179 (190)
T ss_dssp HHTCHHHHHHHHTCSSHHHHHHHTCC
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 69999999998389988999988327
No 5
>>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:94-283)
Probab=99.92 E-value=1.5e-26 Score=184.76 Aligned_cols=178 Identities=15% Similarity=0.091 Sum_probs=126.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 22222121111111015678776531013567757753201222100112332222211222223323220332378531
Q gi|254780882|r 118 NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKI 197 (328)
Q Consensus 118 ~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~ 197 (328)
.||.+++.+++|+.+|+.++++++.... .|+++++.|++.||||+||+++|+|+||++++..+.+.+++.+.
T Consensus 3 k~k~~~~~~~~lt~ee~~~l~~~~~~~~--------~~~~~~~~l~~~tG~R~~El~~l~~~di~~~~~~~~i~~~~~~~ 74 (190)
T 1z19_A 3 RAAKSKVRRSRLTADEYLKIYQAAESSP--------CWLRLAXELAVVTGQRVGDLCEXKWSDIVDGYLYVEQSKTGVKI 74 (190)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHGGGSC--------HHHHHHHHHHHHSCCCHHHHTTCBGGGEETTEEEEECTTTCCEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCHHH--------HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEECCCCCCEE
T ss_conf 1222222223330366764202210022--------78899999999807653344545420231242000014678513
Q ss_pred C-CCC--CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHH
Q ss_conf 0-001--1221002343221110012344665543211112211100012356789997686--9998805417999999
Q gi|254780882|r 198 R-IVP--LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL--PLSTTAHTLRHSFATH 272 (328)
Q Consensus 198 R-~Vp--i~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi--~~~~spH~lRHtfAt~ 272 (328)
. .++ ........+..+.. .........+|+...|.+.........+......... ....++|.+||+|||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~ 150 (190)
T 1z19_A 75 AIPTALHIDALGISXKETLDK----CKEILGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPPTFHELRSLSAR 150 (190)
T ss_dssp EEETTCEETTTTEEHHHHHHH----HHHHHCSSBSSCCTTSSCCCHHHHHHHHHHHHHHTTCCCSSSCCCGGGHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHH----HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 311363014678888888876----4025776420121112110026777899999998477767899973849999999
Q ss_pred HHHCCCCHHHHHHHHCCCCHHHHHH-HHHHCHHHHH
Q ss_conf 9984899889999837888789799-9961989999
Q gi|254780882|r 273 LLSNGGDLRSIQSILGHFRLSTTQI-YTNVNSKNGG 307 (328)
Q Consensus 273 ll~~G~~~~~v~~~lGH~s~~tT~~-Y~h~~~~~~~ 307 (328)
|+++|+|+.+||++|||+|++||++ |.|++.+..+
T Consensus 151 l~~~g~~~~~i~~~lGH~~~~~T~~~Y~~~~~~~~~ 186 (190)
T 1z19_A 151 LYEKQISDKFAQHLLGHKSDTXASQXRDDRGREWDK 186 (190)
T ss_dssp HHHHHTCHHHHHHHHTCSSSCC----------CCCC
T ss_pred HHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHH
T ss_conf 998698999999994899889999985274858999
No 6
>>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Bacteriophage lambda} (A:)
Probab=99.89 E-value=3.7e-24 Score=169.83 Aligned_cols=170 Identities=15% Similarity=0.132 Sum_probs=109.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 11111015678776531013567757753201222100112332222211222223323220332378531000112210
Q gi|254780882|r 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 (328)
Q Consensus 127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~ 206 (328)
++|+.+|+.++++++.... .|+++++.+++.||||+||+++|+|+||+++.+.+.+..+..+....+.....
T Consensus 2 r~lt~~ei~~l~~~~~~~~--------~~~~~~~~l~~~tGlR~~Ei~~L~~~di~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (179)
T 1ae9_A 2 SRLTADEYLKIYQAAESSP--------CWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHID 73 (179)
T ss_dssp CCCCHHHHHHHHHHGGGSC--------HHHHHHHHHHHHHCCCHHHHHHCBGGGEETTEEEEECTTTCCEEEEETTCEEG
T ss_pred CCCCHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHCCCCHHHHCCCCCEEEECCCCCCCCCCCCEEEECCCHHHH
T ss_conf 9899999999999886688--------99999999999977891444025022553101222134654314303651667
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHH-HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 0234322111001234466554321111221110001-23567-899976869998805417999999998489988999
Q gi|254780882|r 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVF-QRYIR-QLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 (328)
Q Consensus 207 ~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i-~~~~~-~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~ 284 (328)
.............. ........+....+........ ..... ......+.....++|.+||++++.+.++|+|+..||
T Consensus 74 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~i~ 152 (179)
T 1ae9_A 74 ALGISMKETLDKCK-EILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQ 152 (179)
T ss_dssp GGTEEHHHHHHHHH-HHTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHCCC-CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 77775443321012-45765313432157876532136666666531123445430268899888999999499999999
Q ss_pred HHHCCCCHHHHHHHHHHCHHH
Q ss_conf 983788878979999619899
Q gi|254780882|r 285 SILGHFRLSTTQIYTNVNSKN 305 (328)
Q Consensus 285 ~~lGH~s~~tT~~Y~h~~~~~ 305 (328)
++|||+|++||++|+|++.++
T Consensus 153 ~~lGH~~~~tT~~Y~~~~~~~ 173 (179)
T 1ae9_A 153 HLLGHKSDTMASQFRDDRGRE 173 (179)
T ss_dssp HHHTC--------CEECSSCE
T ss_pred HHHCCCCHHHHHHHHHCCHHH
T ss_conf 993899999999987367876
No 7
>>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} (A:1-49,A:87-170)
Probab=99.87 E-value=5.8e-23 Score=162.34 Aligned_cols=126 Identities=22% Similarity=0.270 Sum_probs=101.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 11111015678776531013567757753201222100112332222211222223323220332378531000112210
Q gi|254780882|r 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 (328)
Q Consensus 127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~ 206 (328)
+.|+.+|..+++.++.....+.-. .|+.|...||||.||+++|+|.-
T Consensus 5 ~~l~~~e~~~l~~~~~~~~~~~l~-------~~~~~~~~t~~r~~e~~~l~~~~-------------------------- 51 (133)
T 1aih_A 5 AFLYERDIYRLLAECDNSRNPDLG-------LIVRICLATGARWSEAETLTQLF-------------------------- 51 (133)
T ss_dssp CCCCHHHHHHHHHHHTTSSSTTHH-------HHHHHHHHHCCCHHHHHTCBTSS--------------------------
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHH-------HHHHHHHHHCCCHHHHHHHHHCC--------------------------
T ss_conf 689999999999986465896699-------99999999776466788764021--------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 023432211100123446655432111122111000123567899976869--998805417999999998489988999
Q gi|254780882|r 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP--LSTTAHTLRHSFATHLLSNGGDLRSIQ 284 (328)
Q Consensus 207 ~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~--~~~spH~lRHtfAt~ll~~G~~~~~v~ 284 (328)
+++++.|+++++++|++ .+++||+|||||||+|+++|+|+..||
T Consensus 52 ----------------------------------~~i~~~~~~~~~~agi~~~~~it~H~lRHT~At~l~~~G~d~~~Iq 97 (133)
T 1aih_A 52 ----------------------------------NDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLK 97 (133)
T ss_dssp ----------------------------------CCCHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHH
T ss_pred ----------------------------------CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf ----------------------------------1101244334567651258762002468877378774473098999
Q ss_pred HHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHCC
Q ss_conf 9837888789799996198999999999999817300012
Q gi|254780882|r 285 SILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSITQK 324 (328)
Q Consensus 285 ~~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~~~ 324 (328)
++|||+|++||++|+|++.+...++ + +.+|+.++|
T Consensus 98 ~~lGH~s~~tT~~Y~~~~~~~~~~~----~-e~~~~~~~k 132 (133)
T 1aih_A 98 EILGHSTIEMTMRYAHFAPSHLESA----V-KFNPLSNPA 132 (133)
T ss_dssp HHHTCSSHHHHGGGGGGSCCCTTHH----H-HHSTTTSCC
T ss_pred HHCCCCCHHHHHHHHCCCHHHHHHH----H-HHCCCCCCC
T ss_conf 9808998899987766799999999----9-859565879
No 8
>>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:1-114)
Probab=99.76 E-value=9.6e-19 Score=135.99 Aligned_cols=112 Identities=7% Similarity=0.084 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999986254889999999999999999985121478878968989999999999998612101332112344
Q gi|254780882|r 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 (328)
Q Consensus 15 ~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~ 94 (328)
.+++++|++|++.++|+||+|+++|+.+++.|+.||.... .++.+++..+|..|+.++...|+|++|+++++++
T Consensus 2 ~~~~~~fl~~~~~~~~~s~~T~~~Y~~~l~~f~~~l~~~~------~~~~~i~~~~i~~y~~~~~~~~~s~~Ti~~~l~~ 75 (114)
T 1xo0_A 2 DEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNN------RKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQ 75 (114)
T ss_dssp HHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHT------CCCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC------CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 7899999999997548799999999999999999999749------9967899999999999998779998999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 422223332101232222222222222212111111101
Q gi|254780882|r 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 (328)
Q Consensus 95 lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e 133 (328)
|++||+||...|++..||+..+. |+..++.|+++|.+|
T Consensus 76 l~~f~~~~~~~~~~~~~p~~~v~-~~~~~~~p~~lt~~e 113 (114)
T 1xo0_A 76 LNMLHRRSGLPRPSDSNAVSLVM-RRIRKENVDAGERAK 113 (114)
T ss_dssp HHHHHHHHTSCCGGGSHHHHHHH-HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHCCCCCCCCHHHHC-CCCCCCCCCCCCCCC
T ss_conf 98889998731543353244421-332224555452112
No 9
>>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:1-100)
Probab=99.71 E-value=1.7e-17 Score=128.22 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998625488999999999999999998512147887896898999999999999861210133211234
Q gi|254780882|r 14 LLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLS 93 (328)
Q Consensus 14 l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls 93 (328)
+.+.+++|++|++.++|+|++|+++|+.+++.|+.||.... .++.+++..+|.+|+.++.++|+|++|++++++
T Consensus 2 l~~~~~~fl~~l~~~~~~s~~T~~~Y~~~l~~f~~~~~~~~------~~~~~i~~~~i~~~~~~l~~~~~s~~Ti~~~l~ 75 (100)
T 1a0p_A 2 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQALLAERLEGGYKATSSARLLS 75 (100)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTS------CCTTTCCHHHHHHHHHSCC-------CHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC------CCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 87999999999999869179999999999999999998749------992669999999999997640023321256777
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 442222333210123222222222
Q gi|254780882|r 94 GIKSFLKYLKKRKITTESNILNMR 117 (328)
Q Consensus 94 ~lr~f~~~~~~~~~i~~np~~~i~ 117 (328)
+|++||+||+++|+++.||+.+|+
T Consensus 76 ~lr~f~~~~~~~~~i~~nP~~~i~ 99 (100)
T 1a0p_A 76 AVRRLFQYLYREKFREDDPSAHLA 99 (100)
T ss_dssp HHHHHHHHHHHTTSSSSCTTSCC-
T ss_pred HHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 765411333212432210110025
No 10
>>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579} (A:)
Probab=99.65 E-value=3.9e-16 Score=119.72 Aligned_cols=113 Identities=8% Similarity=0.097 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998625488999999999999999998512147887896898999999999999861210133211
Q gi|254780882|r 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 (328)
Q Consensus 11 ~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~ 90 (328)
..++.++++.|+++++ +++|++|+++|+..++.|+.|+. +..++.+|+..+|++|+.++..+|+|++|+++
T Consensus 5 ~~t~~~~~~~~l~~~~--~~~s~~T~~~y~~~l~~~~~~~~-------~~~~i~~i~~~~i~~~~~~l~~~g~s~~t~~~ 75 (118)
T 2kd1_A 5 KLSYGEYLESWFNTKR--HSVGIQTAKVLKGYLNSRIIPSL-------GNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEK 75 (118)
T ss_dssp CSBHHHHHHHHHHHHH--HHHCHHHHHHHHHHHTTTHHHHT-------TSSBGGGCCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH-------CCEEHHHCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 0689999999999984--73899999999999998762885-------78079998999999999998863148999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 234442222333210123222222222222221211111110
Q gi|254780882|r 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEK 132 (328)
Q Consensus 91 ~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~ 132 (328)
+++.|++||+||+++|++..||+.+++.|+.++..++++|+|
T Consensus 76 ~~~~l~~~~~~a~~~~~i~~nP~~~i~~~k~~~~~~~~lt~E 117 (118)
T 2kd1_A 76 IIKVIRNSLEHAIDLELITKNVAAKTKLPKADKEELEHHHHH 117 (118)
T ss_dssp HHHHHHHHHHHHHHTTSCSSCTTTTCCCCSCCCCSSSCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 999999999999988895639184192899999751023667
No 11
>>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435} (A:)
Probab=99.60 E-value=5.5e-15 Score=112.52 Aligned_cols=110 Identities=9% Similarity=0.197 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
++.+++++|+++.+ .++|++|++.|+..++.|..|++ ..++.+|+..++..|+.++. .+.|++|+++++
T Consensus 1 T~~~~~~~~l~~~~--~~~s~~T~~~~~~~~~~~~~~~g--------~~~i~~it~~~i~~~~~~l~-~~~s~~t~~~~~ 69 (111)
T 2kiw_A 1 TFKQVADDWLKQYA--NDVKVSSVRAREKAIQHAIERFN--------TKPIQTIKKHDYQRFVDDIS-AQYSKNYVDSIV 69 (111)
T ss_dssp CHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHTT--------SSCGGGCCHHHHHHHHHHHH-TTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHH-HHCCHHHHHHHH
T ss_conf 99999999999976--11899999999999999999987--------89299935999999999886-440399999899
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 44422223332101232222222222222212111111101
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e 133 (328)
++|++||+||+++++++.||+.+++.|+.+++.+++++.+|
T Consensus 70 ~~l~~~~~~a~~~~~i~~nP~~~i~~~~~~~~~~~~ls~~E 110 (111)
T 2kiw_A 70 ASTNMIFKYAYDTRLIKAMPSEGIKRPKKKVSVELEHHHHH 110 (111)
T ss_dssp HHHHHHHHHHHHTTSCSCCTTTTCCCCSCCCCCCCSSCCCC
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHCCCCC
T ss_conf 99999999999978923181853857888877887711235
No 12
>>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:1-94)
Probab=99.56 E-value=9.9e-15 Score=110.92 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 99999999999986254889999999999999999985121478878968989999999999998-61210133211234
Q gi|254780882|r 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRSLS 93 (328)
Q Consensus 15 ~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~-~~~~s~~T~~~~ls 93 (328)
.+.++.|+++++. +|+|++|+++|+.+++.|..|++. .++.+++..++..|+.++. ..++|++|++++++
T Consensus 3 ~~~i~~~l~~l~~-~~~s~~Ti~~y~~~l~~f~~~l~~--------~~~~~i~~~~i~~~~~~l~~~~~~s~~T~~~~l~ 73 (94)
T 2a3v_A 3 SQFLLSVREFMQT-RYYAKKTIEAYLHWITRYIHFHNK--------KHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALN 73 (94)
T ss_dssp HHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHTTSSS--------CCGGGCCHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHCC--------CCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 8999999999998-498999999999999999999710--------7944499999999999999838988326999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 442222333210123222222
Q gi|254780882|r 94 GIKSFLKYLKKRKITTESNIL 114 (328)
Q Consensus 94 ~lr~f~~~~~~~~~i~~np~~ 114 (328)
+|++||+||.++|+++.||+.
T Consensus 74 ~lr~f~~~~~~~~~i~~nP~~ 94 (94)
T 2a3v_A 74 SLSFLYKEILKTPLSLEIRFQ 94 (94)
T ss_dssp HHHHHHHHTSSCCCCTTCCCC
T ss_pred HHHHHHHHHHCCCCCCCCCCH
T ss_conf 998887510001245432200
No 13
>>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343} (A:)
Probab=99.53 E-value=5.9e-15 Score=112.31 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=93.9
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHH-HHHHHH
Q ss_conf 3149899999999999999862548899999999999999999851214788789689899999999999986-121013
Q gi|254780882|r 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDR 86 (328)
Q Consensus 8 ~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~-~~~s~~ 86 (328)
+....++.+.+++|+++++ .++|++|++.|+.+++.|..|++ ..++.+++..++..|+.++.. .++|++
T Consensus 4 ~~~~~t~~~~~~~~l~~~~--~~~~~~T~~~y~~~l~~~~~~~g--------~~~l~~i~~~~i~~~~~~l~~~~~~s~~ 73 (112)
T 2key_A 4 PSDFKSFHDFVASYMKTYS--RRLEIGTFRHHKSCMRKFKEYCE--------GLQFHELTEDFLRDYLIYMKKTLCNADS 73 (112)
T ss_dssp TTCCCSHHHHHHHHTHHHH--TTSCHHHHHHHHHHHHHTTTSCS--------CCCTTTCCHHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHC--------CCCHHHCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 5488899999999999998--36999899999999999987612--------5997984988899999999887741806
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 32112344422223332101232222222222222212
Q gi|254780882|r 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 (328)
Q Consensus 87 T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~ 124 (328)
|++++++.|++||+||++.|++..||+.+++.|+.+++
T Consensus 74 t~~~~~~~l~~~~~~a~~~~~i~~nP~~~i~~pk~~kr 111 (112)
T 2key_A 74 TAQRNLSTIKIYVSAAIKKGYMENDPFKDFGLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTCCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
T ss_conf 88999999999999999888942187201053324667
No 14
>>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage} (A:)
Probab=99.53 E-value=3.3e-14 Score=107.64 Aligned_cols=101 Identities=17% Similarity=0.113 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
++.+++++|++++.. +++|++|+++|...++.|..+++ ..++.+++..+|++|+.++.. +.+++|+++.+
T Consensus 2 t~~~~~~~~~~~~~~-~~~s~~T~~~y~~~~~~~~~~~~--------~~~i~~i~~~~i~~~~~~l~~-~~s~~t~~~~~ 71 (103)
T 2oxo_A 2 TLHSWLDRYEKILAS-RGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGYID-EGKAASAKLIR 71 (103)
T ss_dssp BHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHSC--------SCBGGGCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHH-HHCCHHHHHHH
T ss_conf 599999999999988-69999999999999999999985--------498666258999999999998-61605545679
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 4442222333210123222222222222221
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~~ 123 (328)
++|++||+||+++|+++.||+.+|+.||.++
T Consensus 72 ~~l~~~f~~a~~~g~i~~NP~~~i~~~k~~~ 102 (103)
T 2oxo_A 72 STLSDAFREAIAEGHITTNHVAATRAAKSEV 102 (103)
T ss_dssp HHHHHHHHHHHHTTSCSSCTTC---------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCC
T ss_conf 9999999999983985679342267678777
No 15
>>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp} (A:)
Probab=99.51 E-value=6.2e-14 Score=105.96 Aligned_cols=102 Identities=10% Similarity=0.107 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
++.+.+++|+++++. +++|++|+++|+..++.|..|++ ..++.+++..++.+|+.++.. +.|++|+++.+
T Consensus 3 t~~~~~~~~~~~~~~-~~~s~~T~~~y~~~~~~~~~~~~--------~~~i~~i~~~~i~~~~~~l~~-~~s~~t~~~~~ 72 (110)
T 2khq_A 3 TFADYFYQWYEVNKL-PHVSESTKRHYESAYKHIKDHFR--------HKLLKDIKRTEYQKFLNEYGL-THSYETIRKLN 72 (110)
T ss_dssp BHHHHHHHHHHHHTG-GGSCHHHHHHHHHHHHHHHHHCS--------SCBGGGCCHHHHHHHHHHHHH-HSCHHHHHHHH
T ss_pred EHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHCCHHHHC--------CCHHHHCCHHHHHHHHHHHHH-CCCHHHHHHHH
T ss_conf 389999999998642-77899999999998860177738--------106854369999999998630-15889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 44422223332101232222222222222212
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~ 124 (328)
++|++||+||++.|+++.||+.+++.|+..++
T Consensus 73 ~~l~~~f~~a~~~~~i~~nP~~~i~~~~~~~~ 104 (110)
T 2khq_A 73 SYIRNAFDDAIHEGYVIKNPTYKAELHASVLE 104 (110)
T ss_dssp HHHHHHHHHHHHTTCCCCCGGGGCCCCCGGGC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEECCCHHH
T ss_conf 99999999999887910198777874643112
No 16
>>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753} (A:)
Probab=99.44 E-value=2.9e-13 Score=101.73 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999986254889999999999999999985121478878968989999999999998612101332112
Q gi|254780882|r 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 (328)
Q Consensus 12 ~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ 91 (328)
.++.+.+++|+.+++. +++|++|+++|+..++.|..|++. ..+.+|+..+|+.|+. +.+.+++|+++.
T Consensus 2 ~t~~~~~~~~l~~~~~-~~~s~~T~~~y~~~~~~~~~~~g~--------~~i~~it~~~i~~~l~---~~~~s~~t~~~~ 69 (108)
T 2kob_A 2 DSFGDWAEKFLKSKEA-DGVSVSQLNSYKNYCRNHLSPLYM--------KSLSEILPADIQSIIN---ETKLAKNTLKAI 69 (108)
T ss_dssp CBHHHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHTSHHHHT--------SBGGGCCHHHHHHHHH---HCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHCCC-CCCCCCEEEHHHHHHHCCCCCCCC--------CCCCCCCHHHHHHHHH---HHCCHHHHHHHH
T ss_conf 3699999999998140-786846531233333122100277--------5401026888740000---101018899999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 344422223332101232222222222222212111
Q gi|254780882|r 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 (328)
Q Consensus 92 ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~ 127 (328)
+++|++||+||+++|++..||+.+++.|+.+++.++
T Consensus 70 ~~~l~~~~~~a~~~~~i~~NP~~~i~~~~~~~~~~~ 105 (108)
T 2kob_A 70 RNTASQIFRLAIENRAIDFNPADYVRIPKIALEHHH 105 (108)
T ss_dssp HHHHHHHHHHHHHTTSSSSCGGGTCCCCCCCCSSCC
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf 999999999998778923690530857898864456
No 17
>>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp} (A:)
Probab=99.35 E-value=1.1e-12 Score=98.24 Aligned_cols=117 Identities=11% Similarity=0.105 Sum_probs=95.1
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 43149899999999999999862548899999999999999999851214788789689899999999999986121013
Q gi|254780882|r 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 (328)
Q Consensus 7 ~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~ 86 (328)
+...+.++.+.+++|++. .++++++|+..|+..++.|+. +.++..++.+|+..++..|+..+... .+++
T Consensus 2 ~~~~~~t~~~~~~~~~~~---~~~~~~~T~~~y~~~~~~~i~-------~~~g~~~i~~it~~~i~~~~~~l~~~-~~~~ 70 (121)
T 2kkv_A 2 ENSGAYTFETIAREWHES---NKRWSEDHRSRVLRYLELYIF-------PHIGSSDIRQLKTSHLLAPIKEVDTS-GKHD 70 (121)
T ss_dssp CSCCCCSHHHHHHHHHTT---CCSSCHHHHHHHHHHHHHHHS-------SSSTTSCTTCCCSGGGHHHHHHHHHT-TTHH
T ss_pred CCCHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHHH-------HHHCCCCHHHHCHHHHHHHHHHHHCC-CCHH
T ss_conf 442404899999999997---797888499999999998999-------99388269997637667777487504-7879
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCHH
Q ss_conf 32112344422223332101232222222222222--2121111111015
Q gi|254780882|r 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK--SNSLPRALNEKQA 134 (328)
Q Consensus 87 T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~--~~~~p~~lt~~e~ 134 (328)
|+++.++.|+++|+||++.|++..||+.+++.++. ....+++|+.+|+
T Consensus 71 t~~~~~~~l~~~~~~Av~~~~i~~NP~~~v~~~~~~~~~~~~~~lt~~Ei 120 (121)
T 2kkv_A 71 VAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPLEHHHHH 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCSCSCSSSSCCCSCCCCCSSCCTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999999878901186878987469999898998766677
No 18
>>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:1-93)
Probab=99.34 E-value=5.5e-12 Score=93.77 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
++.+.+++|+++.+. +++|++|++.|...++.+..|++ ..++.+++..+++.|+..+.. +.|++|+++.+
T Consensus 2 T~~~~~~~~~~~~~~-~~~~~~T~~~y~~~~~~~~~~~g--------~~~i~~it~~~i~~~~~~~~~-~~s~~t~~~~~ 71 (93)
T 1z19_A 2 TLHSWLDRYEKILAS-RGIKQKTLINYXSKIKAIRRGLP--------DAPLEDITTKEIAAXLNGYID-EGKAASAKLIR 71 (93)
T ss_dssp BHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHSC--------SCBGGGCCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--------CCCHHHCCHHHHHHHHHHHHH-HCCHHHHHHHH
T ss_conf 699999999999987-59999999999999999999976--------999687999999999999987-20589999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4442222333210123222222
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNIL 114 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~ 114 (328)
++|++||+||+++|++..||+.
T Consensus 72 ~~l~~~f~~a~~~~~i~~NP~a 93 (93)
T 1z19_A 72 STLSDAFREAIAEGHITTNHVA 93 (93)
T ss_dssp HHHHHHHHHHHHTTSCSCCTTT
T ss_pred HHHHHHHCCCCHHHHHHHHHCC
T ss_conf 9888874244124454221011
No 19
>>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} (A:75-166)
Probab=99.33 E-value=6.2e-12 Score=93.46 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
++.+.+++|+++++. ++.|++|+..|+..++.|..+++ ..++.+|++.+++.|+..+.+. .+++|+++.+
T Consensus 1 T~~~~~~~~~~~~~~-~~~s~~T~~~y~~~~~~~~~~~g--------~~~i~~i~~~~i~~~~~~~~~~-~s~~t~~~~~ 70 (92)
T 1z1b_A 1 TLHSWLDRYEKILAS-RGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGYIDE-GKAASAKLIR 70 (92)
T ss_dssp BHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHSC--------SCBGGGCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--------CCCHHHCCHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_conf 299999999999864-57888799999999999999976--------8987881299999999999851-3799999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4442222333210123222222
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNIL 114 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~ 114 (328)
++|++||+||+.+|++..||+.
T Consensus 71 ~~l~~~~~~av~~~~i~~NP~a 92 (92)
T 1z1b_A 71 STLSDAFREAIAEGHITTNHVA 92 (92)
T ss_dssp HHHHHHHHHHHHTTSCSSCTTT
T ss_pred HHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9976656421100123332222
No 20
>>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073} (A:27-117)
Probab=99.27 E-value=1.4e-12 Score=97.57 Aligned_cols=89 Identities=9% Similarity=0.092 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999851214788789689899999999999986121013321123444222233321012322222
Q gi|254780882|r 34 LTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113 (328)
Q Consensus 34 ~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~lr~f~~~~~~~~~i~~np~ 113 (328)
+|+++|+..++.|+.|+ ++..++.+++..++..|+.++.++|+|++|+++++++|+++|+||+++++++.||+
T Consensus 2 ~T~~~y~~~~~~~~~~~-------~g~~~i~~it~~~i~~~~~~l~~~g~s~~t~~~~~~~l~~~f~~a~~~~~i~~nP~ 74 (91)
T 2kkp_A 2 STWESYETVLRLHVIPT-------LGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHEAMSQARESGLLLQNPT 74 (91)
T ss_dssp CCCSHHHHHHHHHHCCC-------CCTSCTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTTSCSSCGG
T ss_pred CCHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 50989999999989999-------58873766707999999999997587768899999999999999998899441918
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 2222222221211111
Q gi|254780882|r 114 LNMRNLKKSNSLPRAL 129 (328)
Q Consensus 114 ~~i~~~k~~~~~p~~l 129 (328)
..++.|+..++.|+++
T Consensus 75 ~~i~~pk~~~~~~~~l 90 (91)
T 2kkp_A 75 EAAKPPRHPLEHHHHH 90 (91)
T ss_dssp GGSCCCCCCCCCCCCC
T ss_pred HHCCCCCCCCCCCCCC
T ss_conf 4297899986556678
No 21
>>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12} (A:)
Probab=99.23 E-value=2.2e-11 Score=89.95 Aligned_cols=112 Identities=5% Similarity=-0.013 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998625488999999999999999998512147887896898999999999999861210133211
Q gi|254780882|r 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 (328)
Q Consensus 11 ~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~ 90 (328)
+.++.+.+++|+++.+ ++++++|+..|...++.++...- +..++.+|+..++..|+.++.. +.|++|+++
T Consensus 4 ~~t~~~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~i~~~~-------g~~~l~~i~~~~i~~~~~~~~~-~~s~~t~~~ 73 (118)
T 2kj8_A 4 NNSFSAIYKEWYEHKK--QVWSVGYATELAKMFDDDILPII-------GGLEIQDIEPMQLLEVIRRFED-RGAMERANK 73 (118)
T ss_dssp TTBHHHHHHHHHHHHT--TTSCHHHHHHHHHHHHHHHHHHH-------TTSBTTSCCHHHHHHHHHHHHT-TTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHH-------CCCCHHHHCHHHHHHHHHHHHH-CCCCHHHHH
T ss_conf 4559999999999860--41899999999999999978885-------8780999189999999999998-399448899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 234442222333210123222222222222221211--111110
Q gi|254780882|r 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLP--RALNEK 132 (328)
Q Consensus 91 ~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p--~~lt~~ 132 (328)
.++.|+++|+||+..|++..||+.+++.++...+.+ ++++.|
T Consensus 74 ~~~~l~~~~~~A~~~g~i~~NP~~~i~~~~~~~~~~~~~~lt~E 117 (118)
T 2kj8_A 74 ARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNLEHHHHH 117 (118)
T ss_dssp HHHHHHHHHHHHHHTTSCSCCSHHHHHHHHHHGGGTSCCSSCSC
T ss_pred HHHHHHHHHHHHHHCCCHHCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99999999999998688300877789863699888777555677
No 22
>>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum} (A:)
Probab=99.22 E-value=1.8e-11 Score=90.58 Aligned_cols=108 Identities=11% Similarity=0.044 Sum_probs=88.8
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 43149899999999999999862548899999999999999999851214788789689899999999999986121013
Q gi|254780882|r 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 (328)
Q Consensus 7 ~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~ 86 (328)
......++.+++++|++. .++++++|+.+|++.+..++ .+.++..++.+|+..++..|+..+.. +.+++
T Consensus 6 ~~~~~~Tf~~~~~~~l~~---~~~~~~~T~~~~~~~~~~~i-------~~~~g~~~i~~it~~~i~~~~~~~~~-~~s~~ 74 (118)
T 2kj9_A 6 KRNNTRAFKTVAKSWFAT---KTTWSEDYQRSVWTRLETYL-------FPDIGNKDIAELDTGDLLVPIKKIEK-LGYLE 74 (118)
T ss_dssp SSSSCSBHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTS-------STTGGGSBGGGCCHHHHHHHHHHHHT-TTCHH
T ss_pred HHHCCCCHHHHHHHHHHH---CCCCCHHHHHHHHHHHHHHH-------HHHHCCCCHHHHHHHHHHHHHHHHHH-CCCCH
T ss_conf 777347799999999998---78888879999999999887-------89867885999558999999999999-07928
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 321123444222233321012322222222222222121
Q gi|254780882|r 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 (328)
Q Consensus 87 T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~ 125 (328)
|+++.++.|+++|+||++.++|+.||+.+++.|+..+..
T Consensus 75 t~~~~~~~l~~if~~Av~~~~i~~NP~~~v~~~k~~~~~ 113 (118)
T 2kj9_A 75 IAMRVKQYATAIMRYAVQQKMIRFNPAYDLEGAVQKLEH 113 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSSCHHHHCCSCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
T ss_conf 899999999999999998788121848889876689865
No 23
>>2kj5_A Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196} (A:)
Probab=99.20 E-value=1.6e-11 Score=90.84 Aligned_cols=107 Identities=9% Similarity=0.065 Sum_probs=88.4
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31498999999999999998625488999999999999999998512147887896898999999999999861210133
Q gi|254780882|r 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 (328)
Q Consensus 8 ~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T 87 (328)
+..+.++.+.++.|+... ++++++|.+.|+..++.++. +.++..++.+++..++..|+..+.+. .+++|
T Consensus 3 ~~~~~tf~~~~~~~l~~~---~~~~~~t~~~~~~~~~~~i~-------~~~g~~~i~~it~~~i~~~~~~l~~~-~~~~t 71 (116)
T 2kj5_A 3 EKNAYTVAQLADEYFERM---IAGRWKHPNIVRSRIEKDIK-------PAIGSLKVEDVKPRHIDDVLKAVMKR-GAPSI 71 (116)
T ss_dssp SSSCCBHHHHHHHHHHHH---TTTSCSCHHHHHHHHHHTTS-------CSGGGSBSSSCCHHHHHHHHHHHHHH-TCHHH
T ss_pred CCCCCHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHH-------HHHCCCCHHHHCHHHHHHHHHHHHHH-CCHHH
T ss_conf 766552999999999987---46788719999999998979-------98879867870647789998887640-23168
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21123444222233321012322222222222222121
Q gi|254780882|r 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 (328)
Q Consensus 88 ~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~ 125 (328)
+++.++.|+++|+||++.|+++.||+.+++.|+..++.
T Consensus 72 ~~~~~~~l~~~f~~Av~~~~i~~NP~~~i~~~~~~~~~ 109 (116)
T 2kj5_A 72 ANDTLRWLKRMFNYAIKRHIIEYNPAAAFDPGDAGGKL 109 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSCGGGGSCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88999999999999998789567973469723589731
No 24
>>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196} (A:)
Probab=99.19 E-value=2.5e-11 Score=89.62 Aligned_cols=101 Identities=8% Similarity=0.056 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999-99985121478878968989999999999998612101332112
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFL-IFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~-~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ 91 (328)
++.+.+++|++.... .++|++|++.|+..++.++ .++ +..++.+++..+++.|+..+.. .|++|+++.
T Consensus 2 T~~~~~~~~~~~~~~-~~~~~~T~~~~~~~~~~~i~~~~--------g~~~i~~it~~~i~~~~~~~~~--~s~~t~~~~ 70 (106)
T 2khv_A 2 TFSECAALYIKAHRS-SWKNTKHADQWTNTIKTYCGPVI--------GPLSVQDVDTKLIMKVLDPIWE--QKPETASRL 70 (106)
T ss_dssp BHHHHHHHHHHTTGG-GGTTSTHHHHHHHHHHHHTHHHH--------TTSBSSSCCHHHHHHHHHHHHH--HCHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_conf 799999999998420-47986699999999998735234--------9964999767999999999996--328999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 344422223332101232222222222222212
Q gi|254780882|r 92 LSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 (328)
Q Consensus 92 ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~ 124 (328)
++.|+++|+||++.|+++.||+.+++.|+..++
T Consensus 71 ~~~l~~~f~~A~~~~~i~~Np~~~i~~~~~~~k 103 (106)
T 2khv_A 71 RGRIESVLDWATVRGYREGDNPARWRGYLEHHH 103 (106)
T ss_dssp HHHHHHHHHHHHHHTSSCSCCTTSCSSTTTTTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCC
T ss_conf 999999999999929767898188873020143
No 25
>>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:1-94)
Probab=95.13 E-value=0.039 Score=32.21 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999861210133211234442222333210123
Q gi|254780882|r 67 SYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKIT 108 (328)
Q Consensus 67 ~~~~i~~~l~~l~~~~~s~~T~~~~ls~lr~f~~~~~~~~~i 108 (328)
....++.|+.++..+++|++|+..+...++.|..|+...++-
T Consensus 2 ~~~~i~~~l~~l~~~~~s~~Ti~~y~~~l~~f~~~l~~~~~~ 43 (94)
T 2a3v_A 2 GSQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPS 43 (94)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSSCCGG
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 189999999999984989999999999999999997107944
No 26
>>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343} (A:)
Probab=93.74 E-value=0.19 Score=28.00 Aligned_cols=36 Identities=8% Similarity=0.328 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999986121013321123444222233321012
Q gi|254780882|r 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107 (328)
Q Consensus 71 i~~~l~~l~~~~~s~~T~~~~ls~lr~f~~~~~~~~~ 107 (328)
+..|+.+. ..+++++|+..+.+.++.|+.|+....+
T Consensus 14 ~~~~l~~~-~~~~~~~T~~~y~~~l~~~~~~~g~~~l 49 (112)
T 2key_A 14 VASYMKTY-SRRLEIGTFRHHKSCMRKFKEYCEGLQF 49 (112)
T ss_dssp HHHHTHHH-HTTSCHHHHHHHHHHHHHTTTSCSCCCT
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999-8369998999999999999876125997
No 27
>>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:1-114)
Probab=93.26 E-value=0.21 Score=27.73 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999986-121013321123444222233321012
Q gi|254780882|r 69 TEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKI 107 (328)
Q Consensus 69 ~~i~~~l~~l~~-~~~s~~T~~~~ls~lr~f~~~~~~~~~ 107 (328)
+.+..|+.++.. .++|++|+..|...++.|+.|+...+.
T Consensus 3 ~~~~~fl~~~~~~~~~s~~T~~~Y~~~l~~f~~~l~~~~~ 42 (114)
T 1xo0_A 3 EVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNR 42 (114)
T ss_dssp HHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8999999999975487999999999999999999997499
No 28
>>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:1-100)
Probab=91.28 E-value=0.17 Score=28.30 Aligned_cols=39 Identities=13% Similarity=0.359 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999986-121013321123444222233321012
Q gi|254780882|r 69 TEIRAFISKRRT-QKIGDRSLKRSLSGIKSFLKYLKKRKI 107 (328)
Q Consensus 69 ~~i~~~l~~l~~-~~~s~~T~~~~ls~lr~f~~~~~~~~~ 107 (328)
+.+..|+.++.. +++|++|+..+.+.++.|+.|+...+.
T Consensus 4 ~~~~~fl~~l~~~~~~s~~T~~~Y~~~l~~f~~~~~~~~~ 43 (100)
T 1a0p_A 4 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL 43 (100)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999998691799999999999999999987499
No 29
>>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:145-171)
Probab=89.50 E-value=0.14 Score=28.80 Aligned_cols=25 Identities=52% Similarity=0.626 Sum_probs=21.5
Q ss_pred CCCCCCCCCEEE-CCCCCCCCCCCCC
Q ss_conf 222332322033-2378531000112
Q gi|254780882|r 179 QNIMDDQSTLRI-QGKGDKIRIVPLL 203 (328)
Q Consensus 179 ~did~~~~~i~v-~gKg~K~R~Vpi~ 203 (328)
.||||+-+.|+| .|||+|.|+|.|.
T Consensus 1 qDidfdy~~iriw~gkGgK~R~VTlA 26 (27)
T 2a3v_A 1 QDIDFDYGAIRIWQGKGGKNRTVTLA 26 (27)
T ss_dssp GGEETTTTEEEEEEETTTEEEEEECC
T ss_pred HHHHCCCCCCCCCCCCCCCCEEEECC
T ss_conf 10002345531235646775068446
No 30
>>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} (A:50-86)
Probab=84.27 E-value=0.29 Score=26.77 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=18.3
Q ss_pred ECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3237853100011221002343
Q gi|254780882|r 190 IQGKGDKIRIVPLLPSVRKAIL 211 (328)
Q Consensus 190 v~gKg~K~R~Vpi~~~~~~~l~ 211 (328)
+..||+|.|+|||++++.+.|.
T Consensus 11 ~~TK~kKnRtVPIS~eL~~el~ 32 (37)
T 1aih_A 11 TNTKSKKNRTVPISDELFDMLP 32 (37)
T ss_dssp ESSSSSCEEEEECCHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 1344543137766899999987
No 31
>>3bhw_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.50A {Magnetospirillum magneticum amb-1} (A:)
Probab=57.50 E-value=12 Score=16.79 Aligned_cols=16 Identities=13% Similarity=-0.043 Sum_probs=7.4
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 1111015678776531
Q gi|254780882|r 128 ALNEKQALTLVDNVLL 143 (328)
Q Consensus 128 ~lt~~e~~~ll~~~~~ 143 (328)
.++.+++..+++....
T Consensus 119 ~l~~~d~~~F~~~~~~ 134 (209)
T 3bhw_A 119 DLPRKMWDQYLEQCRN 134 (209)
T ss_dssp BCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 8799999999999877
No 32
>>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} (A:298-363)
Probab=44.09 E-value=16 Score=15.99 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCCCC-CEEE--CCCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 22112222233232-2033--23785--31000112210023432211100123446655432
Q gi|254780882|r 173 ALSLTPQNIMDDQS-TLRI--QGKGD--KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLF 230 (328)
Q Consensus 173 l~~L~~~did~~~~-~i~v--~gKg~--K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF 230 (328)
+|+|++++|.+... .|.. .||-+ -...|++.+.+...|..+.+ +..+++.||
T Consensus 8 cCsLRvEhi~l~~~n~v~fDFLGKDSiRy~n~V~V~~~Vfknl~~F~~------~K~~~ddlF 64 (66)
T 2b9s_A 8 CCSLRVEHIQLMPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTR------RKSPGMDIF 64 (66)
T ss_dssp GGGCBGGGEEECTTSEEEEEEECGGGCEEEEEEECCHHHHHHHHHHHT------TCCTTSBTT
T ss_pred ECCCCHHHEEECCCCEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHH------CCCCHHHHC
T ss_conf 544546316854898899997687670789998438999999999965------679847624
No 33
>>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* (A:168-245,A:303-344)
Probab=40.93 E-value=16 Score=15.91 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 322222112222--2332322033237853100011221
Q gi|254780882|r 169 RISEALSLTPQN--IMDDQSTLRIQGKGDKIRIVPLLPS 205 (328)
Q Consensus 169 R~~El~~L~~~d--id~~~~~i~v~gKg~K~R~Vpi~~~ 205 (328)
++.|+..++..+ +-++..++.+.|.+ .+|.||+.+=
T Consensus 60 ~I~eL~~I~~~~~~l~IGAA~~~l~~~~-g~R~vp~~dF 97 (120)
T 2w3s_A 60 HCKDLAQIRETPDGYGIGAASLTLRRGQ-ERRRMPLEDF 97 (120)
T ss_dssp TCGGGSCEEEETTEEEEETCEEEEEBTT-BCCCCBGGGG
T ss_pred CCCCCEEEEECCCEEEECHCEEEEEECC-CEEEEECCCC
T ss_conf 4341016998499089734379998057-6089730112
No 34
>>2f4q_A Type I topoisomerase, putative; topoisomerase IB; 1.75A {Deinococcus radiodurans} (A:147-200)
Probab=37.67 E-value=18 Score=15.63 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCCCCCEEE--CCCCCCCCCCCCCCCCHH
Q ss_conf 221122222332322033--237853100011221002
Q gi|254780882|r 173 ALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLPSVRK 208 (328)
Q Consensus 173 l~~L~~~did~~~~~i~v--~gKg~K~R~Vpi~~~~~~ 208 (328)
+..|+..++....+.|.+ .||+|+++.+-|.+.-..
T Consensus 6 ltTLr~rHv~i~g~~i~f~f~gKsG~~~~~~i~D~~la 43 (54)
T 2f4q_A 6 LSTLRQRHVVVDGNTVTFRFKGKHGVSQHKATSDRTLA 43 (54)
T ss_dssp GGGCBGGGEEEETTEEEEEEECGGGCEEEEEEECHHHH
T ss_pred EEEEEHHHEEEECCEEEEEEECCCCEEEEEEECCHHHH
T ss_conf 36536501235088369998558736999774688999
No 35
>>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} (C:)
Probab=36.02 E-value=25 Score=14.68 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=28.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 6999880541799999999848998899998378887897999961
Q gi|254780882|r 256 LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 (328)
Q Consensus 256 i~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~ 301 (328)
-+..+++-.... |-.|+++|.++..|++.+|= |.+ -+|-++
T Consensus 2 Rp~klt~eq~~~--a~~l~~~G~s~~~iA~~~gV-Sr~--TiYr~l 42 (52)
T 1jko_C 2 RPRAINKHEQEQ--ISRLLEKGHPRQQLAIIFGI-GVS--TLYRYF 42 (52)
T ss_dssp CCCSSCTTHHHH--HHHHHHTTCCHHHHHHTTSC-CHH--HHHHHS
T ss_pred CCCCCCHHHHHH--HHHHHHCCCCHHHHHHHHCC-CHH--HHHHHC
T ss_conf 898699999999--99999879989999999897-999--999984
No 36
>>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} (A:1-291,A:403-464)
Probab=35.83 E-value=25 Score=14.66 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHH---HHHHCCCCH-----HHHHHHHCCCCHHHHHHHHH-----
Q ss_conf 12211100012356789997686999880541799999---999848998-----89999837888789799996-----
Q gi|254780882|r 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFAT---HLLSNGGDL-----RSIQSILGHFRLSTTQIYTN----- 300 (328)
Q Consensus 234 ~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt---~ll~~G~~~-----~~v~~~lGH~s~~tT~~Y~h----- 300 (328)
..+-+++..+...++.+.+..+++-.+++|.=+-.... ..+++|++. .-+.+.-||.++++...|.+
T Consensus 180 t~G~~~P~~~~~lv~~lk~~~~i~i~~H~Hnt~Gla~an~l~Ai~aGad~IDtsi~glG~~tGn~~tE~lv~~L~~~g~~ 259 (353)
T 2nx9_A 180 MAGILTPYAAEELVSTLKKQVDVELHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMSGTYGHPATESLVATLQGTGYD 259 (353)
T ss_dssp TTSCCCHHHHHHHHHHHHHHCCSCEEEEECCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSCCBHHHHHHHHTTSTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 76656279999999999863576178984771778999999999839989983787889983168799999998614989
Q ss_pred --HCHHHH---HHHHHHHHHHHCCC
Q ss_conf --198999---99999999981730
Q gi|254780882|r 301 --VNSKNG---GDWMMEIYDQTHPS 320 (328)
Q Consensus 301 --~~~~~~---~~~l~~~~~~~~~~ 320 (328)
++.+.. .+-++++.+++.|.
T Consensus 260 t~idl~~L~~i~~~~~~i~~~~~~~ 284 (353)
T 2nx9_A 260 TGLDIAKLEQIAAYFRDVRKKYHAF 284 (353)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9989899999999999999985266
No 37
>>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:513-842,A:963-1020)
Probab=27.77 E-value=23 Score=14.91 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH---HHHCCCCH-----HHHHHHHCCCCHHHHHHHHH
Q ss_conf 11122111000123567899976869998805417999999---99848998-----89999837888789799996
Q gi|254780882|r 232 GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH---LLSNGGDL-----RSIQSILGHFRLSTTQIYTN 300 (328)
Q Consensus 232 ~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~---ll~~G~~~-----~~v~~~lGH~s~~tT~~Y~h 300 (328)
....+-+++..+...++.+.+..+++-.+++|.=.-....+ .+++|+++ .-+.+.-|+.++++...|.+
T Consensus 217 ~Dt~G~~~P~~~~~Lv~~lk~~~~i~i~~H~Hnd~Gla~An~laAi~aGad~VD~si~GmG~~tGn~~le~lv~~L~ 293 (388)
T 2qf7_A 217 XDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALS 293 (388)
T ss_dssp EETTCCCCHHHHHHHHHHHHHHCSSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBCGGGCSBTSCCBHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 17766656166999999998454972899625653026689999997698666513444457888875799999975
No 38
>>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2} (A:250-297,A:383-459)
Probab=26.89 E-value=12 Score=16.79 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=13.6
Q ss_pred HHHHHHCCCCHHHHHHHH
Q ss_conf 999983788878979999
Q gi|254780882|r 282 SIQSILGHFRLSTTQIYT 299 (328)
Q Consensus 282 ~v~~~lGH~s~~tT~~Y~ 299 (328)
--+++|||.++.|-..|-
T Consensus 95 F~~ElLGH~D~dTQ~~Yk 112 (125)
T 2v6e_A 95 FFMEILGHDDENTQLHYK 112 (125)
T ss_dssp HHHHHHTCSSTTGGGSSC
T ss_pred HHHHHHCCCCHHHHHHHH
T ss_conf 999985788625555666
No 39
>>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:495-825,A:946-1003)
Probab=21.68 E-value=22 Score=15.03 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH---HHHCCCCH-----HHHHHHHCCCCHHHHHHHH
Q ss_conf 32111122111000123567899976869998805417999999---99848998-----8999983788878979999
Q gi|254780882|r 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATH---LLSNGGDL-----RSIQSILGHFRLSTTQIYT 299 (328)
Q Consensus 229 lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~---ll~~G~~~-----~~v~~~lGH~s~~tT~~Y~ 299 (328)
|-+....+-+++..+...++.+.+..+++-.++.|.=+.....+ .+++|+++ .-+...-|+.++++.--|.
T Consensus 215 I~i~Dt~G~~~P~~~~~lv~~lk~~~~i~i~~H~Hnt~Gla~An~laAi~aGvd~VD~si~gmg~~tGn~~le~lv~~L 293 (389)
T 3hbl_A 215 LAIKDMAGLLKPKAAYELIGELKSAVDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASMSGLTSQPSANSLYYAL 293 (389)
T ss_dssp EEEEETTCCCCHHHHHHHHHHHHHHCCSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBCGGGCSBTSCCBHHHHHHHT
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 9973875565768999999999860798558734888642799999999749988984113355776897689999998
Done!