HHsearch results for GI: 254780882 and protein with PDBid: 1a31_A

>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=93.13  E-value=0.11  Score=28.46  Aligned_cols=98  Identities=27%  Similarity=0.324  Sum_probs=60.6

Q ss_pred             CCCCCCCCCCCC------C------CCCCCCCCCCCC------CCCEE--ECCCCCC--CCCCCCCCCCHHHHHHHHHHH
Q ss_conf             221001123322------2------221122222332------32203--3237853--100011221002343221110
Q gi|254780882|r  160 LYLLYGCGLRIS------E------ALSLTPQNIMDD------QSTLR--IQGKGDK--IRIVPLLPSVRKAILEYYDLC  217 (328)
Q Consensus       160 ~~ll~~TGlR~~------E------l~~L~~~did~~------~~~i~--v~gKg~K--~R~Vpi~~~~~~~l~~yl~~~  217 (328)
                      +.|+-.+.+|+|      |      ++.|+.+||.+.      .+.|.  ..||.+.  +..|++.+.+...|.....  
T Consensus       305 v~LID~lalRVGNEky~~EnadTvG~tTLR~eHV~l~~e~~~~~~~i~fdFlGKdgir~~~~V~vd~~v~knLk~~~~--  382 (591)
T 1a31_A          305 LYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFME--  382 (591)
T ss_dssp             HHHHHHHCCCCCCCCCTTTSCCCCCGGGCBGGGCCEEEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHTTT--
T ss_pred             HHHHHHHCCCCCCHHHHHHCCCCEEECCCCHHHEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHH--
T ss_conf             999987433047754453349977432473866353045567786389986067771676673479999999999986--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             012344665543211112211100012356789997686999880541799999999
Q gi|254780882|r  218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL  274 (328)
Q Consensus       218 ~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll  274 (328)
                          ...+++.||     ..++...++.+++.    ++  ..+|+..||--.||..+
T Consensus       383 ----~K~p~d~LF-----~~I~s~~VN~yLke----~m--~glTAKdFRTwnAS~tl  424 (591)
T 1a31_A          383 ----NKQPEDDLF-----DRLNTGILNKHLQD----LM--EGLTAKVFRTYNASITL  424 (591)
T ss_dssp             ----TCCTTSBTT-----TTCCHHHHHHHHHH----HS--TTCCHHHHHHHHHHHHH
T ss_pred             ----CCCCCCCCC-----CCCCHHHHHHHHHH----HC--CCCCEEHHHHCCHHHHH
T ss_conf             ----689701244-----32886888999998----64--89740011010158999