HHsearch results for GI: 254780882 and protein with PDBid: 1a31_A
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=93.13 E-value=0.11 Score=28.46 Aligned_cols=98 Identities=27% Similarity=0.324 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCC------C------CCCCCCCCCCCC------CCCEE--ECCCCCC--CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 221001123322------2------221122222332------32203--3237853--100011221002343221110
Q gi|254780882|r 160 LYLLYGCGLRIS------E------ALSLTPQNIMDD------QSTLR--IQGKGDK--IRIVPLLPSVRKAILEYYDLC 217 (328)
Q Consensus 160 ~~ll~~TGlR~~------E------l~~L~~~did~~------~~~i~--v~gKg~K--~R~Vpi~~~~~~~l~~yl~~~ 217 (328)
+.|+-.+.+|+| | ++.|+.+||.+. .+.|. ..||.+. +..|++.+.+...|.....
T Consensus 305 v~LID~lalRVGNEky~~EnadTvG~tTLR~eHV~l~~e~~~~~~~i~fdFlGKdgir~~~~V~vd~~v~knLk~~~~-- 382 (591)
T 1a31_A 305 LYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFME-- 382 (591)
T ss_dssp HHHHHHHCCCCCCCCCTTTSCCCCCGGGCBGGGCCEEEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHTTT--
T ss_pred HHHHHHHCCCCCCHHHHHHCCCCEEECCCCHHHEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHH--
T ss_conf 999987433047754453349977432473866353045567786389986067771676673479999999999986--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 012344665543211112211100012356789997686999880541799999999
Q gi|254780882|r 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 (328)
Q Consensus 218 ~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll 274 (328)
...+++.|| ..++...++.+++. ++ ..+|+..||--.||..+
T Consensus 383 ----~K~p~d~LF-----~~I~s~~VN~yLke----~m--~glTAKdFRTwnAS~tl 424 (591)
T 1a31_A 383 ----NKQPEDDLF-----DRLNTGILNKHLQD----LM--EGLTAKVFRTYNASITL 424 (591)
T ss_dssp ----TCCTTSBTT-----TTCCHHHHHHHHHH----HS--TTCCHHHHHHHHHHHHH
T ss_pred ----CCCCCCCCC-----CCCCHHHHHHHHHH----HC--CCCCEEHHHHCCHHHHH
T ss_conf ----689701244-----32886888999998----64--89740011010158999