HHsearch results for GI: 254780882 and protein with PDBid: 1aih_A

>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=99.96  E-value=1.6e-30  Score=208.58  Aligned_cols=164  Identities=26%  Similarity=0.346  Sum_probs=124.6

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             11111101567877653101356775775320122210011233222221122222332322033237853100011221
Q gi|254780882|r  126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS  205 (328)
Q Consensus       126 p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~  205 (328)
                      ..+||++|+.++++++......       +.++++.+++.||||+||+++|+|+|||++...+ ..+|++++|.|||++.
T Consensus         4 ~~~Ls~eEi~~ll~~~~~~~~~-------~~~~~i~~~~~tG~R~~E~~~L~~~dI~~~~~~~-~~~K~~~~r~vpl~~~   75 (170)
T 1aih_A            4 LAFLYERDIYRLLAECDNSRNP-------DLGLIVRICLATGARWSEAETLTQSQVMPYKITF-TNTKSKKNRTVPISDE   75 (170)
T ss_dssp             CCCCCHHHHHHHHHHHTTSSST-------THHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEE-ESSSSSCEEEEECCHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEE-EECCCCCEEEECCHHH
T ss_conf             4689999999999986565897-------7999999999978569999858641046651256-6325662036264799


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf             00234322111001234466554321111221110001235678999768699988054179999999984899889999
Q gi|254780882|r  206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS  285 (328)
Q Consensus       206 ~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~  285 (328)
                      +.++|..+            .+++|....      ..+...  ......+++..++||+|||||||+|+++|+|+..||+
T Consensus        76 ~~~~l~~~------------~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~H~lRht~at~l~~~g~~~~~i~~  135 (170)
T 1aih_A           76 LFDMLPKK------------RGRLFNDAY------ESFENA--VLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKE  135 (170)
T ss_dssp             HHHHSCCC------------SSBSSCCCH------HHHHHH--HHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHH------------CCCCCCCCH------HHHHHH--HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf             99999984------------277666204------678999--9888623687632130164899999986997999999


Q ss_pred             HHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHH
Q ss_conf             8378887897999961989999999999998173000
Q gi|254780882|r  286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT  322 (328)
Q Consensus       286 ~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~  322 (328)
                      +|||+|++||++|+|++.++.+    +++ ++||...
T Consensus       136 ~lGH~s~~~t~~Y~~~~~~~~~----~~~-~~~p~~~  167 (170)
T 1aih_A          136 ILGHSTIEMTMRYAHFAPSHLE----SAV-KFNPLSN  167 (170)
T ss_dssp             HHTCSSHHHHGGGGGGSCCCTT----HHH-HHSTTTS
T ss_pred             HHCCCCHHHHHHHHCCCHHHHH----HHH-HHCCCCC
T ss_conf             8389989999998877999999----999-8586768