HHsearch results for GI: 254780882 and protein with PDBid: 1aih_A
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=99.96 E-value=1.6e-30 Score=208.58 Aligned_cols=164 Identities=26% Similarity=0.346 Sum_probs=124.6
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 11111101567877653101356775775320122210011233222221122222332322033237853100011221
Q gi|254780882|r 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 (328)
Q Consensus 126 p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~ 205 (328)
..+||++|+.++++++...... +.++++.+++.||||+||+++|+|+|||++...+ ..+|++++|.|||++.
T Consensus 4 ~~~Ls~eEi~~ll~~~~~~~~~-------~~~~~i~~~~~tG~R~~E~~~L~~~dI~~~~~~~-~~~K~~~~r~vpl~~~ 75 (170)
T 1aih_A 4 LAFLYERDIYRLLAECDNSRNP-------DLGLIVRICLATGARWSEAETLTQSQVMPYKITF-TNTKSKKNRTVPISDE 75 (170)
T ss_dssp CCCCCHHHHHHHHHHHTTSSST-------THHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEE-ESSSSSCEEEEECCHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEE-EECCCCCEEEECCHHH
T ss_conf 4689999999999986565897-------7999999999978569999858641046651256-6325662036264799
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 00234322111001234466554321111221110001235678999768699988054179999999984899889999
Q gi|254780882|r 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 (328)
Q Consensus 206 ~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~ 285 (328)
+.++|..+ .+++|.... ..+... ......+++..++||+|||||||+|+++|+|+..||+
T Consensus 76 ~~~~l~~~------------~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~H~lRht~at~l~~~g~~~~~i~~ 135 (170)
T 1aih_A 76 LFDMLPKK------------RGRLFNDAY------ESFENA--VLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKE 135 (170)
T ss_dssp HHHHSCCC------------SSBSSCCCH------HHHHHH--HHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHH------------CCCCCCCCH------HHHHHH--HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999984------------277666204------678999--9888623687632130164899999986997999999
Q ss_pred HHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHH
Q ss_conf 8378887897999961989999999999998173000
Q gi|254780882|r 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 (328)
Q Consensus 286 ~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~ 322 (328)
+|||+|++||++|+|++.++.+ +++ ++||...
T Consensus 136 ~lGH~s~~~t~~Y~~~~~~~~~----~~~-~~~p~~~ 167 (170)
T 1aih_A 136 ILGHSTIEMTMRYAHFAPSHLE----SAV-KFNPLSN 167 (170)
T ss_dssp HHTCSSHHHHGGGGGGSCCCTT----HHH-HHSTTTS
T ss_pred HHCCCCHHHHHHHHCCCHHHHH----HHH-HHCCCCC
T ss_conf 8389989999998877999999----999-8586768