HHsearch results for GI: 254780882 and protein with PDBid: 1z19_A

>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=100.00  E-value=1.6e-41  Score=277.28  Aligned_cols=266  Identities=18%  Similarity=0.195  Sum_probs=209.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r   13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL   92 (328)
Q Consensus        13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l   92 (328)
                      +|.+.+++|++.+.. +++|++|+++|+..++.|..|++        ..++.+++..++..|+.++...+ +++|+++.+
T Consensus         2 Tl~e~l~~y~~~~~~-~~l~~~T~~~y~~~l~~~~~~~g--------~~~l~~it~~~i~~~~~~~~~~~-~~~t~~~~~   71 (283)
T 1z19_A            2 TLHSWLDRYEKILAS-RGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGYIDEG-KAASAKLIR   71 (283)
T ss_dssp             BHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHSC--------SCBGGGCCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--------CCCHHHCCHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_conf             299999999999987-69999999999999999999976--------99968799999999999999858-999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             44422223332101232222222222222212111111101567877653101356775775320122210011233222
Q gi|254780882|r   93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE  172 (328)
Q Consensus        93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~E  172 (328)
                      +.|++||+||++.++++.||+..++.++.... .+.++.+|+.++++.+....    .+.    ++++.+++.||||++|
T Consensus        72 ~~l~~~~~~a~~~~~i~~np~~~~~~~~~~~~-~~~lt~~e~~~i~~~~~~~~----~~~----~~~~~l~~~tG~R~~E  142 (283)
T 1z19_A           72 STLSDAFREAIAEGHITTNHVAATRAAKSKVR-RSRLTADEYLKIYQAAESSP----CWL----RLAMELAVVTGQRVGD  142 (283)
T ss_dssp             HHHHHHHHHHHHTTSCSCCTTTTSCCCCCCCC-CCCCCHHHHHHHHHHGGGSC----HHH----HHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHCCC----HHH----HHHHHHHHHHCCCHHH
T ss_conf             99999999999859865481765005534777-77688999999999871488----899----9999999997878655


Q ss_pred             CCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             221122222332322033-2378531000112210023432211100123446655432111122111000123567899
Q gi|254780882|r  173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR  251 (328)
Q Consensus       173 l~~L~~~did~~~~~i~v-~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~  251 (328)
                      +++|+|+||+.+  .+.| ..|+++.+.+|++...........+..........++++|++.+|++++..+++..+++++
T Consensus       143 i~~L~~~di~~~--~~~i~~~K~~~~~~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (283)
T 1z19_A          143 LCEMKWSDIVDG--YLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRAR  220 (283)
T ss_dssp             HTTCBGGGEETT--EEEEECTTTCCEEEEETTCEETTTTEEHHHHHHHHHHHHCSSBSSCCTTSSCCCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHCCC--EEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             751929992188--049986688842461073878999998888887530357774023201324467157999999999


Q ss_pred             HHCCCCC---CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             9768699---988054179999999984899889999837888789799996
Q gi|254780882|r  252 RYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN  300 (328)
Q Consensus       252 ~~~gi~~---~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h  300 (328)
                      +.+|+..   ..++|+|||+ |+.++++|+|+..||++|||+|++||++|.+
T Consensus       221 ~~~~~~~~~~~~~~H~lR~~-~~~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~  271 (283)
T 1z19_A          221 KASGLSFEGDPPTFHELRSL-SARLYEKQISDKFAQHLLGHKSDTMASQYRD  271 (283)
T ss_dssp             HHTTCCCSSSCCCGGGHHHH-HHHHHHHHTCHHHHHHHHTCSSSCC------
T ss_pred             HHHCCCCCCCCCCCCHHHHH-HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf             98088767999972859999-9999986989999999838998899999842