HHsearch results for GI: 254780882 and protein with PDBid: 1z19_A
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=100.00 E-value=1.6e-41 Score=277.28 Aligned_cols=266 Identities=18% Similarity=0.195 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
+|.+.+++|++.+.. +++|++|+++|+..++.|..|++ ..++.+++..++..|+.++...+ +++|+++.+
T Consensus 2 Tl~e~l~~y~~~~~~-~~l~~~T~~~y~~~l~~~~~~~g--------~~~l~~it~~~i~~~~~~~~~~~-~~~t~~~~~ 71 (283)
T 1z19_A 2 TLHSWLDRYEKILAS-RGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGYIDEG-KAASAKLIR 71 (283)
T ss_dssp BHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHSC--------SCBGGGCCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--------CCCHHHCCHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_conf 299999999999987-69999999999999999999976--------99968799999999999999858-999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 44422223332101232222222222222212111111101567877653101356775775320122210011233222
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~E 172 (328)
+.|++||+||++.++++.||+..++.++.... .+.++.+|+.++++.+.... .+. ++++.+++.||||++|
T Consensus 72 ~~l~~~~~~a~~~~~i~~np~~~~~~~~~~~~-~~~lt~~e~~~i~~~~~~~~----~~~----~~~~~l~~~tG~R~~E 142 (283)
T 1z19_A 72 STLSDAFREAIAEGHITTNHVAATRAAKSKVR-RSRLTADEYLKIYQAAESSP----CWL----RLAMELAVVTGQRVGD 142 (283)
T ss_dssp HHHHHHHHHHHHTTSCSCCTTTTSCCCCCCCC-CCCCCHHHHHHHHHHGGGSC----HHH----HHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHCCC----HHH----HHHHHHHHHHCCCHHH
T ss_conf 99999999999859865481765005534777-77688999999999871488----899----9999999997878655
Q ss_pred CCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 221122222332322033-2378531000112210023432211100123446655432111122111000123567899
Q gi|254780882|r 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 (328)
Q Consensus 173 l~~L~~~did~~~~~i~v-~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~ 251 (328)
+++|+|+||+.+ .+.| ..|+++.+.+|++...........+..........++++|++.+|++++..+++..+++++
T Consensus 143 i~~L~~~di~~~--~~~i~~~K~~~~~~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (283)
T 1z19_A 143 LCEMKWSDIVDG--YLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRAR 220 (283)
T ss_dssp HTTCBGGGEETT--EEEEECTTTCCEEEEETTCEETTTTEEHHHHHHHHHHHHCSSBSSCCTTSSCCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHCCC--EEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 751929992188--049986688842461073878999998888887530357774023201324467157999999999
Q ss_pred HHCCCCC---CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9768699---988054179999999984899889999837888789799996
Q gi|254780882|r 252 RYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 (328)
Q Consensus 252 ~~~gi~~---~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h 300 (328)
+.+|+.. ..++|+|||+ |+.++++|+|+..||++|||+|++||++|.+
T Consensus 221 ~~~~~~~~~~~~~~H~lR~~-~~~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~ 271 (283)
T 1z19_A 221 KASGLSFEGDPPTFHELRSL-SARLYEKQISDKFAQHLLGHKSDTMASQYRD 271 (283)
T ss_dssp HHTTCCCSSSCCCGGGHHHH-HHHHHHHHTCHHHHHHHHTCSSSCC------
T ss_pred HHHCCCCCCCCCCCCHHHHH-HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 98088767999972859999-9999986989999999838998899999842