HHsearch results for GI: 254780882 and protein with PDBid: 2h7g_X
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Probab=96.20 E-value=0.0023 Score=38.94 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCEEE--CCCCCCCCCCCC--CCCCHHHHHHHHHHHCCCCC
Q ss_conf 122210011233222-----------221122222332322033--237853100011--22100234322111001234
Q gi|254780882|r 158 AILYLLYGCGLRISE-----------ALSLTPQNIMDDQSTLRI--QGKGDKIRIVPL--LPSVRKAILEYYDLCPFDLN 222 (328)
Q Consensus 158 ~i~~ll~~TGlR~~E-----------l~~L~~~did~~~~~i~v--~gKg~K~R~Vpi--~~~~~~~l~~yl~~~~~~~~ 222 (328)
+++.|+-.|.+|+|- ++.|+.+||.+..+.|.+ .||.|+.+.+-| .+.+...|....+ .
T Consensus 119 ~~v~Lld~~~iRVGne~Ya~~N~SyGlTTLr~rHV~v~g~~i~f~F~GK~Gv~~~~~i~~d~~l~~~l~~~~~------~ 192 (314)
T 2h7g_X 119 VFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDKIVIKFVGKDKVSHEFVVHKSNRLYKPLLKLTD------D 192 (314)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHHCCCCSTTCBGGGEEEETTEEEEEEECGGGCEEEEEEETTSTTHHHHHHHCC------T
T ss_pred HHHHHHHHHCEECCCHHHHHCCCCCCEEEEECCCEEEECCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHH------C
T ss_conf 9999998622415774322205981500201011778799799998758884589996265899999999975------5
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH--------CCC-----------CHHHH
Q ss_conf 46655432111122111000123567899976869998805417999999998--------489-----------98899
Q gi|254780882|r 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS--------NGG-----------DLRSI 283 (328)
Q Consensus 223 ~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~--------~G~-----------~~~~v 283 (328)
..++.++|. .++.+.++..++ .. .+|+.+||-..||.++. ... -+..|
T Consensus 193 ~~~~~~lf~-----~v~~~~vn~~l~----~~----~~taKdFRTw~at~~a~~~l~~~~~~~~~~~~~kk~i~~~i~~v 259 (314)
T 2h7g_X 193 SSPEEFLFN-----KLSERKVYESIK----QF----GIRIKDLRTYGVNYTFLYNFWTNVKSISPLPSPKKLIALTIKQT 259 (314)
T ss_dssp TCTTSBSST-----TCCHHHHHHHHG----GG----TSCHHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHH
T ss_pred CCCHHEEEE-----ECCCHHHHHHHH----HC----CCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 781015754-----446267899888----35----84078898646259999999851676675678899999999999
Q ss_pred HHHHCCCCHHHH-HHHHH
Q ss_conf 998378887897-99996
Q gi|254780882|r 284 QSILGHFRLSTT-QIYTN 300 (328)
Q Consensus 284 ~~~lGH~s~~tT-~~Y~h 300 (328)
++.|||+- .+. .-|.|
T Consensus 260 A~~LgNTp-aVcR~sYIh 276 (314)
T 2h7g_X 260 AEVVGHTP-SISKRAYMA 276 (314)
T ss_dssp HHHHTCCT-TTHHHHSTH
T ss_pred HHHHCCCH-HHHHHHCCC
T ss_conf 99838975-555674579