HHsearch results for GI: 254780882 and protein with PDBid: 2h7g_X

>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Probab=96.20  E-value=0.0023  Score=38.94  Aligned_cols=123  Identities=16%  Similarity=0.180  Sum_probs=74.0

Q ss_pred             CCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCEEE--CCCCCCCCCCCC--CCCCHHHHHHHHHHHCCCCC
Q ss_conf             122210011233222-----------221122222332322033--237853100011--22100234322111001234
Q gi|254780882|r  158 AILYLLYGCGLRISE-----------ALSLTPQNIMDDQSTLRI--QGKGDKIRIVPL--LPSVRKAILEYYDLCPFDLN  222 (328)
Q Consensus       158 ~i~~ll~~TGlR~~E-----------l~~L~~~did~~~~~i~v--~gKg~K~R~Vpi--~~~~~~~l~~yl~~~~~~~~  222 (328)
                      +++.|+-.|.+|+|-           ++.|+.+||.+..+.|.+  .||.|+.+.+-|  .+.+...|....+      .
T Consensus       119 ~~v~Lld~~~iRVGne~Ya~~N~SyGlTTLr~rHV~v~g~~i~f~F~GK~Gv~~~~~i~~d~~l~~~l~~~~~------~  192 (314)
T 2h7g_X          119 VFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDKIVIKFVGKDKVSHEFVVHKSNRLYKPLLKLTD------D  192 (314)
T ss_dssp             HHHHHHHHHCCCCCCHHHHHHHCCCCSTTCBGGGEEEETTEEEEEEECGGGCEEEEEEETTSTTHHHHHHHCC------T
T ss_pred             HHHHHHHHHCEECCCHHHHHCCCCCCEEEEECCCEEEECCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHH------C
T ss_conf             9999998622415774322205981500201011778799799998758884589996265899999999975------5


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH--------CCC-----------CHHHH
Q ss_conf             46655432111122111000123567899976869998805417999999998--------489-----------98899
Q gi|254780882|r  223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS--------NGG-----------DLRSI  283 (328)
Q Consensus       223 ~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~--------~G~-----------~~~~v  283 (328)
                      ..++.++|.     .++.+.++..++    ..    .+|+.+||-..||.++.        ...           -+..|
T Consensus       193 ~~~~~~lf~-----~v~~~~vn~~l~----~~----~~taKdFRTw~at~~a~~~l~~~~~~~~~~~~~kk~i~~~i~~v  259 (314)
T 2h7g_X          193 SSPEEFLFN-----KLSERKVYESIK----QF----GIRIKDLRTYGVNYTFLYNFWTNVKSISPLPSPKKLIALTIKQT  259 (314)
T ss_dssp             TCTTSBSST-----TCCHHHHHHHHG----GG----TSCHHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHH
T ss_pred             CCCHHEEEE-----ECCCHHHHHHHH----HC----CCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf             781015754-----446267899888----35----84078898646259999999851676675678899999999999


Q ss_pred             HHHHCCCCHHHH-HHHHH
Q ss_conf             998378887897-99996
Q gi|254780882|r  284 QSILGHFRLSTT-QIYTN  300 (328)
Q Consensus       284 ~~~lGH~s~~tT-~~Y~h  300 (328)
                      ++.|||+- .+. .-|.|
T Consensus       260 A~~LgNTp-aVcR~sYIh  276 (314)
T 2h7g_X          260 AEVVGHTP-SISKRAYMA  276 (314)
T ss_dssp             HHHHTCCT-TTHHHHSTH
T ss_pred             HHHHCCCH-HHHHHHCCC
T ss_conf             99838975-555674579