HHsearch results for GI: 254780882 and protein with PDBid: 2khq_A
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.22 E-value=3.2e-11 Score=88.04 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999986254889999999999999999985121478878968989999999999998612101332112
Q gi|254780882|r 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 (328)
Q Consensus 12 ~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ 91 (328)
.++.+.+++|++.... .+++|+|+.+|+..++.+..++ +...+.+++..+++.|+..+. ++.|++|+++.
T Consensus 2 iTf~~~~~~w~~~~~~-~~~~~~T~~~y~~~~~~i~~~~--------g~~~l~~it~~~i~~~~~~l~-~~~s~~t~~~~ 71 (110)
T 2khq_A 2 ITFADYFYQWYEVNKL-PHVSESTKRHYESAYKHIKDHF--------RHKLLKDIKRTEYQKFLNEYG-LTHSYETIRKL 71 (110)
T ss_dssp CBHHHHHHHHHHHHTG-GGSCHHHHHHHHHHHHHHHHHC--------SSCBGGGCCHHHHHHHHHHHH-HHSCHHHHHHH
T ss_pred EEHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH--------CCCCHHHCCHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 8289999999999762-7789999999999999999996--------746040078999999999998-64128999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 34442222333210123222222222222
Q gi|254780882|r 92 LSGIKSFLKYLKKRKITTESNILNMRNLK 120 (328)
Q Consensus 92 ls~lr~f~~~~~~~~~i~~np~~~i~~~k 120 (328)
++.|+++|+||+.+|+++.||+.+|+.+.
T Consensus 72 ~~~l~~~~~~Av~~~~i~~NP~~~vkl~~ 100 (110)
T 2khq_A 72 NSYIRNAFDDAIHEGYVIKNPTYKAELHA 100 (110)
T ss_dssp HHHHHHHHHHHHHTTCCCCCGGGGCCCCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEECC
T ss_conf 99999999999988791019876877572