HHsearch results for GI: 254780882 and protein with PDBid: 2khq_A

>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.22  E-value=3.2e-11  Score=88.04  Aligned_cols=99  Identities=10%  Similarity=0.126  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999986254889999999999999999985121478878968989999999999998612101332112
Q gi|254780882|r   12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS   91 (328)
Q Consensus        12 ~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~   91 (328)
                      .++.+.+++|++.... .+++|+|+.+|+..++.+..++        +...+.+++..+++.|+..+. ++.|++|+++.
T Consensus         2 iTf~~~~~~w~~~~~~-~~~~~~T~~~y~~~~~~i~~~~--------g~~~l~~it~~~i~~~~~~l~-~~~s~~t~~~~   71 (110)
T 2khq_A            2 ITFADYFYQWYEVNKL-PHVSESTKRHYESAYKHIKDHF--------RHKLLKDIKRTEYQKFLNEYG-LTHSYETIRKL   71 (110)
T ss_dssp             CBHHHHHHHHHHHHTG-GGSCHHHHHHHHHHHHHHHHHC--------SSCBGGGCCHHHHHHHHHHHH-HHSCHHHHHHH
T ss_pred             EEHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH--------CCCCHHHCCHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf             8289999999999762-7789999999999999999996--------746040078999999999998-64128999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             34442222333210123222222222222
Q gi|254780882|r   92 LSGIKSFLKYLKKRKITTESNILNMRNLK  120 (328)
Q Consensus        92 ls~lr~f~~~~~~~~~i~~np~~~i~~~k  120 (328)
                      ++.|+++|+||+.+|+++.||+.+|+.+.
T Consensus        72 ~~~l~~~~~~Av~~~~i~~NP~~~vkl~~  100 (110)
T 2khq_A           72 NSYIRNAFDDAIHEGYVIKNPTYKAELHA  100 (110)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCGGGGCCCCC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEECC
T ss_conf             99999999999988791019876877572