HHsearch results for GI: 254780882 and protein with PDBid: 3lys_A
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=99.25 E-value=1.5e-11 Score=90.16 Aligned_cols=101 Identities=10% Similarity=0.161 Sum_probs=85.0
Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14989999999999999986254889999999999999999985121478878968989999999999998612101332
Q gi|254780882|r 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 (328)
Q Consensus 9 ~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~ 88 (328)
+...+|.|.+++|++..+ ..+++++|..+|+..++.+..+++ ..++.+|+..+++.|+..+. +++|++|+
T Consensus 3 p~k~tl~d~~~~Wl~~~k-~~~~~~~T~~~y~~~~~~i~~~~g--------~~~l~~It~~~i~~~~~~l~-~~~s~~tv 72 (112)
T 3lys_A 3 PIKQEISEYFKDWMELYK-KNAIDEMTYKGYEQTLKYLKTYMP--------NVLISEITASSYQRALNKFA-ETHAKAST 72 (112)
T ss_dssp CCCSBHHHHHHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHSS--------SCBTTTCCHHHHHHHHHHHH-TTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHC--------CCCHHHCCHHHHHHHHHHHC-CCCCHHHH
T ss_conf 660779999999999972-288999999999999999999988--------08020079999999999732-46426899
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 1123444222233321012322222222222
Q gi|254780882|r 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 (328)
Q Consensus 89 ~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~ 119 (328)
++.++.|+++|+||+.+|+|+.||+.+|+..
T Consensus 73 ~~~~~~l~~~~~~Av~~g~I~~NP~~~v~i~ 103 (112)
T 3lys_A 73 KGFHTRVRASIQCLIEEGRLQKDFTTRAVVK 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCTTSSTTCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEC
T ss_conf 9999999999999998869030888888767