HHsearch results for GI: 254780882 and protein with PDBid: 3nkh_A

>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=100.00  E-value=7.2e-35  Score=235.75  Aligned_cols=188  Identities=20%  Similarity=0.266  Sum_probs=151.5

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCH----HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC--------
Q ss_conf             11111101567877653101356775----775320122210011233222221122222332322033237--------
Q gi|254780882|r  126 PRALNEKQALTLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK--------  193 (328)
Q Consensus       126 p~~lt~~e~~~ll~~~~~~~~~~~~~----~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gK--------  193 (328)
                      ..+|+.+|+..+++.+..........    ...+..+|+.||+.||||+||+++|+|+|||++++++.|.++        
T Consensus        23 ~~~l~~~Ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~TG~R~~El~~L~~~did~e~~~i~v~~~~~~~~~~~  102 (244)
T 3nkh_A           23 NAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDES  102 (244)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCCCHHHHHTCBGGGEETTTTEEEECCEEEEEECTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHCCCCCCEEEEECCCCCCCCCC
T ss_conf             89999999999999987632012321146679999999999998393689995191352166556257832410101036


Q ss_pred             -----------CCCCCCCCCCCCCHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             -----------8531000112210023432211100123----4466554321111221110001235678999768699
Q gi|254780882|r  194 -----------GDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL  258 (328)
Q Consensus       194 -----------g~K~R~Vpi~~~~~~~l~~yl~~~~~~~----~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~  258 (328)
                                 .++.|.|||++.+.+.|..|+...+...    .....+++|++..|.|++..++++.|+++++.+|++.
T Consensus       103 ~~~~~~~~~k~~~~~R~i~i~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~~~s~~~~~~~~~~~~~~~gi~~  182 (244)
T 3nkh_A          103 GGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDK  182 (244)
T ss_dssp             SCEEEEECC---CCCEEEECCHHHHHHHHHHHHHHHHHHHHCTTCCCCSBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCS
T ss_pred             CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             77421345567785068832088878899999986543203556787654122037972320010015778999818875


Q ss_pred             CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHHCHHHHHHHHHHH
Q ss_conf             9880541799999999848998899998378887897-999961989999999999
Q gi|254780882|r  259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI  313 (328)
Q Consensus       259 ~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT-~~Y~h~~~~~~~~~l~~~  313 (328)
                      +++||+|||||||.|+++|+|+..||++|||+|++|| .+|+|++++..++.+.++
T Consensus       183 ~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~~ki  238 (244)
T 3nkh_A          183 EVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKL  238 (244)
T ss_dssp             CCSHHHHHHHHHHHHHHTTCCHHHHHHHHCSTTHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             46763348999999998699999999983899889999984467999999999998