HHsearch results for GI: 254780882 and protein with PDBid: 3nkh_A
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.2e-35 Score=235.75 Aligned_cols=188 Identities=20% Similarity=0.266 Sum_probs=151.5
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCH----HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC--------
Q ss_conf 11111101567877653101356775----775320122210011233222221122222332322033237--------
Q gi|254780882|r 126 PRALNEKQALTLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------- 193 (328)
Q Consensus 126 p~~lt~~e~~~ll~~~~~~~~~~~~~----~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gK-------- 193 (328)
..+|+.+|+..+++.+.......... ...+..+|+.||+.||||+||+++|+|+|||++++++.|.++
T Consensus 23 ~~~l~~~Ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~TG~R~~El~~L~~~did~e~~~i~v~~~~~~~~~~~ 102 (244)
T 3nkh_A 23 NAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDES 102 (244)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCCCHHHHHTCBGGGEETTTTEEEECCEEEEEECTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHCCCCCCEEEEECCCCCCCCCC
T ss_conf 89999999999999987632012321146679999999999998393689995191352166556257832410101036
Q ss_pred -----------CCCCCCCCCCCCCHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf -----------8531000112210023432211100123----4466554321111221110001235678999768699
Q gi|254780882|r 194 -----------GDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 (328)
Q Consensus 194 -----------g~K~R~Vpi~~~~~~~l~~yl~~~~~~~----~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~ 258 (328)
.++.|.|||++.+.+.|..|+...+... .....+++|++..|.|++..++++.|+++++.+|++.
T Consensus 103 ~~~~~~~~~k~~~~~R~i~i~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~~~s~~~~~~~~~~~~~~~gi~~ 182 (244)
T 3nkh_A 103 GGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDK 182 (244)
T ss_dssp SCEEEEECC---CCCEEEECCHHHHHHHHHHHHHHHHHHHHCTTCCCCSBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCS
T ss_pred CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 77421345567785068832088878899999986543203556787654122037972320010015778999818875
Q ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHHCHHHHHHHHHHH
Q ss_conf 9880541799999999848998899998378887897-999961989999999999
Q gi|254780882|r 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313 (328)
Q Consensus 259 ~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT-~~Y~h~~~~~~~~~l~~~ 313 (328)
+++||+|||||||.|+++|+|+..||++|||+|++|| .+|+|++++..++.+.++
T Consensus 183 ~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~~ki 238 (244)
T 3nkh_A 183 EVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKL 238 (244)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCHHHHHHHHCSTTHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 46763348999999998699999999983899889999984467999999999998