HHsearch results for GI: 254780882 and protein with PDBid: 3nrw_A
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=99.74 E-value=7.3e-18 Score=129.52 Aligned_cols=111 Identities=15% Similarity=0.276 Sum_probs=97.9
Q ss_pred CHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 04314989999999999999986254889999999999999999985121478878968989999999999998612101
Q gi|254780882|r 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 (328)
Q Consensus 6 ~~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~ 85 (328)
|.+..+.++.+++|+||+++. +++|++|+++|+.+++.|..||+.. ++..+.+++..++.+|+.++.++|+++
T Consensus 1 mt~~~~~t~~e~ie~yl~~~~--~~ls~~T~~~Y~~~l~~f~~~l~~~-----~~~~l~~it~~~l~~y~~~l~~~g~s~ 73 (117)
T 3nrw_A 1 MTERPSLSPREARDRYLAHRQ--TDAADASIKSFRYRLKHFVEWAEER-----DITAMRELTGWKLDEYETFRRGSDVSP 73 (117)
T ss_dssp ---CCCCCHHHHHHHHHHHHT--TTSCHHHHHHHHHHHHHHHHHHHHT-----TCCSGGGCCHHHHHHHHHHHHTSSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHCCHHHHHHHHHHHHHCCHHH
T ss_conf 999999999999999999978--1868999999999999999999986-----337887688999999999987122268
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 33211234442222333210123222222222222221
Q gi|254780882|r 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 (328)
Q Consensus 86 ~T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~ 123 (328)
+|+++++++||+||+||++.|+++.||+..|+.||.-+
T Consensus 74 ~Ti~~~~~~lr~f~~~~~~~~~i~~np~~~V~~Pkv~~ 111 (117)
T 3nrw_A 74 ATLNGEMQTLKNWLEYLARIDVVDEDLPEKVHVPTILE 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCTTSGGGCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC
T ss_conf 89969988999999999998996759999787998120