HHsearch results for GI: 254780882 and protein with PDBid: 3nrw_A

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=99.74  E-value=7.3e-18  Score=129.52  Aligned_cols=111  Identities=15%  Similarity=0.276  Sum_probs=97.9

Q ss_pred             CHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             04314989999999999999986254889999999999999999985121478878968989999999999998612101
Q gi|254780882|r    6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD   85 (328)
Q Consensus         6 ~~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~   85 (328)
                      |.+..+.++.+++|+||+++.  +++|++|+++|+.+++.|..||+..     ++..+.+++..++.+|+.++.++|+++
T Consensus         1 mt~~~~~t~~e~ie~yl~~~~--~~ls~~T~~~Y~~~l~~f~~~l~~~-----~~~~l~~it~~~l~~y~~~l~~~g~s~   73 (117)
T 3nrw_A            1 MTERPSLSPREARDRYLAHRQ--TDAADASIKSFRYRLKHFVEWAEER-----DITAMRELTGWKLDEYETFRRGSDVSP   73 (117)
T ss_dssp             ---CCCCCHHHHHHHHHHHHT--TTSCHHHHHHHHHHHHHHHHHHHHT-----TCCSGGGCCHHHHHHHHHHHHTSSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHCCHHHHHHHHHHHHHCCHHH
T ss_conf             999999999999999999978--1868999999999999999999986-----337887688999999999987122268


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             33211234442222333210123222222222222221
Q gi|254780882|r   86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN  123 (328)
Q Consensus        86 ~T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~  123 (328)
                      +|+++++++||+||+||++.|+++.||+..|+.||.-+
T Consensus        74 ~Ti~~~~~~lr~f~~~~~~~~~i~~np~~~V~~Pkv~~  111 (117)
T 3nrw_A           74 ATLNGEMQTLKNWLEYLARIDVVDEDLPEKVHVPTILE  111 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSCTTSGGGCCCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC
T ss_conf             89969988999999999998996759999787998120