Query gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 328
No_of_seqs 176 out of 10042
Neff 8.9
Searched_HMMs 23785
Date Tue May 31 22:20:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780882.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a0p_A Site-specific recombina 100.0 0 0 335.9 11.9 281 16-307 4-286 (290)
2 2a3v_A Site-specific recombina 100.0 0 0 312.7 12.4 272 12-309 3-313 (320)
3 1z1b_A Integrase; protein-DNA 100.0 2.2E-42 0 282.7 14.2 271 10-301 72-345 (356)
4 1xo0_A Recombinase CRE; CRE re 100.0 5.3E-41 2.8E-45 274.1 15.9 290 16-316 3-322 (324)
5 1z19_A Integrase; protein-DNA 100.0 1.6E-41 0 277.3 13.3 266 13-300 2-271 (283)
6 3nkh_A Integrase; alpha-fold, 100.0 7.2E-35 3E-39 235.7 9.4 188 126-313 23-238 (244)
7 1aih_A HP1 integrase; DNA inte 100.0 1.6E-30 6.8E-35 208.6 4.7 164 126-322 4-167 (170)
8 1ae9_A Lambda integrase; DNA r 99.9 4.3E-24 1.8E-28 168.5 4.1 166 127-302 2-170 (179)
9 3nrw_A Phage integrase/site-sp 99.7 7.3E-18 3.1E-22 129.5 9.5 111 6-123 1-111 (117)
10 2oxo_A Integrase; DNA-binding 99.4 4E-13 1.7E-17 99.9 8.8 100 13-122 2-101 (103)
11 2kkp_A Phage integrase; SAM-li 99.4 2.4E-13 1E-17 101.3 5.1 109 8-124 3-111 (117)
12 2kd1_A DNA integration/recombi 99.4 9.8E-13 4.1E-17 97.5 7.7 107 9-124 3-109 (118)
13 2key_A Putative phage integras 99.3 5.5E-13 2.3E-17 99.0 4.5 96 13-118 9-105 (112)
14 2kiw_A INT protein; alpha, str 99.3 5.5E-12 2.3E-16 92.8 9.0 102 13-125 1-102 (111)
15 2kob_A Uncharacterized protein 99.3 1.2E-11 4.9E-16 90.8 7.6 99 13-123 3-101 (108)
16 3lys_A Prophage PI2 protein 01 99.2 1.5E-11 6.2E-16 90.2 7.6 101 9-119 3-103 (112)
17 2khq_A Integrase; all-alpha, s 99.2 3.2E-11 1.3E-15 88.0 8.3 99 12-120 2-100 (110)
18 2kkv_A Integrase; protein stru 98.7 1.2E-08 4.9E-13 72.0 5.9 100 7-117 2-101 (121)
19 2kj5_A Phage integrase; GFT NM 98.6 5E-08 2.1E-12 68.1 6.5 107 7-124 2-108 (116)
20 2kj9_A Integrase; DNA_BRE_C su 98.6 4.2E-08 1.8E-12 68.5 6.0 97 11-118 10-106 (118)
21 2kj8_A Putative prophage CPS-5 98.6 4.4E-08 1.9E-12 68.4 5.6 95 13-117 6-100 (118)
22 2khv_A Phage integrase; soluti 98.0 4.4E-06 1.9E-10 55.9 3.8 92 13-114 2-94 (106)
23 2v6e_A Protelemorase; hairpin 97.3 0.00031 1.3E-08 44.4 5.0 134 160-300 286-447 (558)
24 3m4a_A Putative type I topoiso 97.1 0.00037 1.5E-08 43.9 4.2 130 158-300 126-291 (346)
25 2h7g_X DNA topoisomerase 1; ty 96.2 0.0023 9.8E-08 38.9 2.9 123 158-300 119-276 (314)
26 3nrw_A Phage integrase/site-sp 95.1 0.048 2E-06 30.7 6.2 37 70-107 12-48 (117)
27 2b9s_A Topoisomerase I-like pr 95.1 0.013 5.6E-07 34.2 3.3 99 159-274 280-394 (432)
28 2key_A Putative phage integras 93.6 0.14 6E-06 27.8 5.9 32 70-102 13-44 (112)
29 1a31_A Protein (topoisomerase 93.1 0.11 4.7E-06 28.5 4.7 98 160-274 305-424 (591)
30 1xo0_A Recombinase CRE; CRE re 91.2 0.39 1.7E-05 25.0 5.6 37 16-53 50-86 (324)
31 1a0p_A Site-specific recombina 89.8 0.18 7.6E-06 27.1 2.8 38 69-106 4-42 (290)
32 3bhw_A Uncharacterized protein 74.0 3.9 0.00016 18.8 4.6 19 128-146 119-137 (209)
33 1jko_C HIN recombinase, DNA-in 47.2 12 0.0005 15.8 3.9 42 255-301 1-42 (52)
34 1p4w_A RCSB; solution structur 31.6 21 0.00088 14.2 6.9 58 235-296 10-67 (99)
35 3lz8_A Putative chaperone DNAJ 25.0 12 0.00052 15.7 0.0 24 18-41 27-51 (329)
36 3lsg_A Two-component response 21.5 32 0.0013 13.1 2.1 54 238-294 31-85 (103)
37 1bl0_A Protein (multiple antib 21.1 33 0.0014 13.0 2.0 66 238-306 39-109 (129)
No 1
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=100.00 E-value=0 Score=335.89 Aligned_cols=281 Identities=30% Similarity=0.426 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999862548899999999999999999851214788789689899999999999986121013321123444
Q gi|254780882|r 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95 (328)
Q Consensus 16 ~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~l 95 (328)
..||+||+++..|||+||+|+++|+.+|+.|..||.... .++.+++..+|.+|+.++...+.+++|+++++++|
T Consensus 4 ~~i~~fl~~l~~er~ls~~T~~~Y~~~l~~f~~~l~~~~------~~~~~i~~~~i~~~~~~l~~~~~s~~t~~~~l~~l 77 (290)
T 1a0p_A 4 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQALLAERLEGGYKATSSARLLSAV 77 (290)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTS------CCTTTCCHHHHHHHHHSCC-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC------CCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999999999869089999999999999999998859------99376999999999999987799889999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 22223332101232222222222222212111111101567877653101356775775320122210011233222221
Q gi|254780882|r 96 KSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALS 175 (328)
Q Consensus 96 r~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~ 175 (328)
++||+|+..++++..+|+..+..|+..+..+......+....+. ..........|+++++.+++.||||++|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~ 152 (290)
T 1a0p_A 78 RRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ-----APLIDQPLELRDKAMLEVLYATGLRVSELVG 152 (290)
T ss_dssp HHHHHHHHHTTSSSSCTTSCC----------CCCCHHHHHHHHH-----CSCTTSHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHH-----HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999824334681765037776666765100899999875-----2100134118999999999995877899980
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 122222332322033237853100011221002343221110012-3446655432111122111000123567899976
Q gi|254780882|r 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFD-LNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 (328)
Q Consensus 176 L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~-~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~ 254 (328)
|+|+|||++.+.+.+.+||+|+|.+|........+..+....... ......+++|+..++.+.+...+.+.++.+++.+
T Consensus 153 L~~~did~~~~~i~~~~K~~k~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (290)
T 1a0p_A 153 LTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA 232 (290)
T ss_dssp CBGGGEETTTTEEEEECSSSCEEEEECCHHHHHHHHHHHHHTHHHHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHT
T ss_pred CCHHHCCCCCCEEEECCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 94999575799898668899401411327777789999985001110134455545333566542378999999999994
Q ss_pred CCC-CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHHHH
Q ss_conf 869-99880541799999999848998899998378887897999961989999
Q gi|254780882|r 255 GLP-LSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGG 307 (328)
Q Consensus 255 gi~-~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~~~ 307 (328)
|+. .++|||+|||||||.|+++|+|+..||++|||+|++||++|+|++.++.+
T Consensus 233 ~~~~~~~s~H~lRht~at~l~~~G~~~~~i~~~lGH~s~~tT~~Y~~~~~~~lr 286 (290)
T 1a0p_A 233 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 286 (290)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHHCSSCGGGSSCC--CCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHH
T ss_conf 578999874517799999999878999999988189988999999878999999
No 2
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=100.00 E-value=0 Score=312.72 Aligned_cols=272 Identities=29% Similarity=0.409 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 89999999999999986254889999999999999999985121478878968989999999999998612-10133211
Q gi|254780882|r 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQK-IGDRSLKR 90 (328)
Q Consensus 12 ~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~-~s~~T~~~ 90 (328)
.++++.+++||.. |++|++|+++|..++++|+.|++. ..+.+++..+|..|+.++..++ .++++.++
T Consensus 3 ~~fl~~~~~yl~~----r~~s~~T~~~Y~~~l~~f~~~~~~--------~~~~~i~~~~i~~~~~~l~~~~~~s~~~~~~ 70 (320)
T 2a3v_A 3 SQFLLSVREFMQT----RYYAKKTIEAYLHWITRYIHFHNK--------KHPSLMGDKEVEEFLTYLAVQGKVATKTQSL 70 (320)
T ss_dssp HHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHTTSSS--------CCGGGCCHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHCC--------CCHHHCCHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 8999999999998----596899999999999999999722--------7932399999999999999848956999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 23444222233321012322222222222222121111111015678776531013567757753201222100112332
Q gi|254780882|r 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRI 170 (328)
Q Consensus 91 ~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~ 170 (328)
.+++++.++.|+...+....++ +..||.+++.|++++.+|...+.... ..++++++.+++.||+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~---~~~~k~~k~~~~~l~~~e~~~~~~~~-----------~~~~~~~~~ll~~tG~R~ 136 (320)
T 2a3v_A 71 ALNSLSFLYKEILKTPLSLEIR---FQRSQLERKLPVVLTRDEIRRLLEIV-----------DPKHQLPIKLLYGSGLRL 136 (320)
T ss_dssp HHHHHHHHHHHTSSCCCCTTCC---CCCCCCCCCCCCCCCHHHHHHHTTSS-----------CHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHCC-----------CHHHHHHHHHHHHHCCCH
T ss_conf 9999999998866403573356---76678788899767899999998556-----------817899999999828737
Q ss_pred CCCCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC----C----------------------C
Q ss_conf 22221122222332322033-2378531000112210023432211100123----4----------------------4
Q gi|254780882|r 171 SEALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDL----N----------------------L 223 (328)
Q Consensus 171 ~El~~L~~~did~~~~~i~v-~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~----~----------------------~ 223 (328)
+|+++|+|+|++++.+.+.+ .+||+++|.+|++..+.+.+.+|+...+... . .
T Consensus 137 ~E~~~l~~~d~~~~~~~i~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (320)
T 2a3v_A 137 MECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYE 216 (320)
T ss_dssp HHHHTCBGGGEETTTTEEEEEEETTTEEEEEECCGGGHHHHHHHHHHHHHHHHHHTSCTTBCCSCCSTTCTTTSTTGGGC
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 88888787751033323036636787013872659999999999998565432233211344212037776645353010
Q ss_pred CCCCCCCCC-----------CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCH
Q ss_conf 665543211-----------112211100012356789997686999880541799999999848998899998378887
Q gi|254780882|r 224 NIQLPLFRG-----------IRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRL 292 (328)
Q Consensus 224 ~~~~~lF~~-----------~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~ 292 (328)
....++|.+ ..|.+++...++..++++++++|++.++|||+|||||||+|+++|+|+..||++|||+|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~s~H~lRHtfaT~ll~~g~~l~~vq~~lGHss~ 296 (320)
T 2a3v_A 217 FRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDV 296 (320)
T ss_dssp GGGSBSSBCSSCEEETTTTEEECCBCCHHHHHHHHHHHHHTTCCCSCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTCSSH
T ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCH
T ss_conf 13310024555555543233235646589999999999998599999888777899999999878999999988389988
Q ss_pred HHHHHHHHHCHHHHHHH
Q ss_conf 89799996198999999
Q gi|254780882|r 293 STTQIYTNVNSKNGGDW 309 (328)
Q Consensus 293 ~tT~~Y~h~~~~~~~~~ 309 (328)
+||++|+|+.++..+++
T Consensus 297 ~tT~~Y~hl~~~~~~~~ 313 (320)
T 2a3v_A 297 KTTQIYTHVLDRGASGV 313 (320)
T ss_dssp HHHGGGCC------CCC
T ss_pred HHHHHHHCCCHHHHHHH
T ss_conf 99999982799789999
No 3
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=100.00 E-value=2.2e-42 Score=282.68 Aligned_cols=271 Identities=18% Similarity=0.174 Sum_probs=213.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49899999999999999862548899999999999999999851214788789689899999999999986121013321
Q gi|254780882|r 10 VSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLK 89 (328)
Q Consensus 10 ~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~ 89 (328)
...++.+.++.|++.+.. ++++++|.+.|...++.|..|++ ..++.+|+..++..|+.++.+.+ +++|++
T Consensus 72 ~~~t~~~~~~~~~~~~~~-~~~~~~T~~~y~~~~~~l~~~~g--------~~~l~~it~~~i~~~~~~~~~~~-~~~t~~ 141 (356)
T 1z1b_A 72 NSVTLHSWLDRYEKILAS-RGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGYIDEG-KAASAK 141 (356)
T ss_dssp HSCBHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHSC--------SCBGGGCCHHHHHHHHHHHHHTT-CHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--------CCCHHHCCHHHHHHHHHHHHHCC-CHHHHH
T ss_conf 575299999999999886-59999999999999999999976--------99968789999999999999849-999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 12344422223332101232222222222222212111111101567877653101356775775320122210011233
Q gi|254780882|r 90 RSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLR 169 (328)
Q Consensus 90 ~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR 169 (328)
+.++.|+++|+||+..+++..||+..++.|+.... ...++.+|+..+++++.... .+ . ++++.|++.||||
T Consensus 142 ~~~~~l~~~~~~a~~~~~~~~np~~~~~~~~~~~~-~~~lt~~E~~~l~~~~~~~~----~~--~--~~~~~l~~~tG~R 212 (356)
T 1z1b_A 142 LIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVR-RSRLTADEYLKIYQAAESSP----CW--L--RLAMELAVVTGQR 212 (356)
T ss_dssp HHHHHHHHHHHHHHHTTSCSSCTTTTSCCCCCCCC-BCCCCHHHHHHHHHHTTSSC----HH--H--HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCC-CCCCCHHHHHHHHHCCCCCC----HH--H--HHHHHHHHHHCCC
T ss_conf 99999999999999851212481543201223577-87689899878752012476----57--8--9999999996878
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 22222112222233232203323785310001122100234322111001234466554321111221110001235678
Q gi|254780882|r 170 ISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 (328)
Q Consensus 170 ~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~ 249 (328)
++|+++|+|+||+.+...+. .+|+++.+.||+++.+..++....+..........++++|++..|+|++..++++.|++
T Consensus 213 ~~Ei~~L~~~di~~~~~~i~-~~K~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 291 (356)
T 1z1b_A 213 VGDLCEMKWSDIVDGYLYVE-QSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMR 291 (356)
T ss_dssp HHHHTTCBGGGEETTEEEEE-CTTTCCEEEEETTCEETTTTEEHHHHHHHHHHHTCSSBSSCCTTSCCCCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHCCCCEEEE-ECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 54575092999224645999-88888424602718789999999999986440157765001134666777899999999
Q ss_pred HHHHCCCCC---CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999768699---9880541799999999848998899998378887897999961
Q gi|254780882|r 250 LRRYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 (328)
Q Consensus 250 ~~~~~gi~~---~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~ 301 (328)
+++.+|++. ++++|+|||+ ||.|+++|+|+..|+++|||+|.+||++|++.
T Consensus 292 ~~~~~g~~~~~~~~t~H~lRh~-a~~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~ 345 (356)
T 1z1b_A 292 ARKASGLSFEGDPPTFHELRSL-SARLYEKQISDKFAQHLLGHKSDTMASQYRDD 345 (356)
T ss_dssp HHHHHTCCCSSBCCCTTHHHHH-HHHHHHHHTCHHHHHHHHTCSSHHHHHHHTCC
T ss_pred HHHHCCCCCCCCCCCCCHHHHH-HHHHHHCCCCHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 9998599988899975868999-99999869999999988189998999988047
No 4
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=100.00 E-value=5.3e-41 Score=274.07 Aligned_cols=290 Identities=11% Similarity=0.098 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999862548899999999999999999851214788789689899999999999986121013321123444
Q gi|254780882|r 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI 95 (328)
Q Consensus 16 ~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~l 95 (328)
+..+.++++++..+++|++|+++|...++.|..||...... +.++++.+|.+|+.++..+|++++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~s~~T~~~y~~~~~~f~~f~~~~~~~------~~~it~~~v~~y~~~l~~~g~s~~Ti~~~l~~l 76 (324)
T 1xo0_A 3 EVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRK------WFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQL 76 (324)
T ss_dssp HHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHTCC------CSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999999864859999999999999999999973989------567999999999999987799989999999998
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCC--------CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 2222333210123222222222222--------22121111111015678776531013567757753201222100112
Q gi|254780882|r 96 KSFLKYLKKRKITTESNILNMRNLK--------KSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCG 167 (328)
Q Consensus 96 r~f~~~~~~~~~i~~np~~~i~~~k--------~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TG 167 (328)
++|++|+...+.+..+|......+. .....+.+++.++...+.... .......+.|+.+++.+++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~~~~~~~~~~~~ 152 (324)
T 1xo0_A 77 NMLHRRSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQALAFERTDFDQVRSLM----ENSDRCQDIRNLAFLGIAYNTL 152 (324)
T ss_dssp HHHHHHHTSCCGGGSHHHHHHHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHH----SSCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHCC
T ss_conf 877899874264446336553010000145533233357768899999999866----4534077899999999876555
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEE----CCC---CCCCCCCCCCCCCHHHHHHHHHHHCCCCCC-------CCCCCCCCCC
Q ss_conf 33222221122222332322033----237---853100011221002343221110012344-------6655432111
Q gi|254780882|r 168 LRISEALSLTPQNIMDDQSTLRI----QGK---GDKIRIVPLLPSVRKAILEYYDLCPFDLNL-------NIQLPLFRGI 233 (328)
Q Consensus 168 lR~~El~~L~~~did~~~~~i~v----~gK---g~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~-------~~~~~lF~~~ 233 (328)
+|.+|++.+.+.|+++......+ .+| +++.|.||+++.+.+++..|.......... ...+.+|.+.
T Consensus 153 ~r~~e~~~~~~~d~~~~~~~~~~~~~~~~k~~~~~~~r~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (324)
T 1xo0_A 153 LKIAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPS 232 (324)
T ss_dssp CCHHHHHHCBGGGEEEEETTEEEEEECCCCSSSSCSCEEEEECHHHHHHHHHHHHHHCGGGSTTSBSSCEECTTSCEECC
T ss_pred CHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCC
T ss_conf 72898864112100015676300012344333236630220047799999999986022345432001014667665664
Q ss_pred CCCCCCCCCHHHHHHHH---HHH----CCC-CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCHHH
Q ss_conf 12211100012356789---997----686-9998805417999999998489988999983788878979999619899
Q gi|254780882|r 234 RGKPLNPGVFQRYIRQL---RRY----LGL-PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKN 305 (328)
Q Consensus 234 ~g~~ls~~~i~~~~~~~---~~~----~gi-~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~~~~~ 305 (328)
.+.+++...+...+... .+. +|+ +.+++||+|||||||.|+++|+|+..||++|||+|++||++|+|..+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~H~lRHt~at~l~~~G~~~~~v~~~lGH~s~~tt~~Y~~~~~~~ 312 (324)
T 1xo0_A 233 ATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLDSE 312 (324)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHCSCCCSCCSCSSCCTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSSSSHHHHSTTSGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCHHH
T ss_conf 45666640255677888899999988617888877886319999999998789999999882899889999983564688
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254780882|r 306 GGDWMMEIYDQ 316 (328)
Q Consensus 306 ~~~~l~~~~~~ 316 (328)
. .++.++.++
T Consensus 313 ~-~~~~~~~~~ 322 (324)
T 1xo0_A 313 T-GAMVRLLED 322 (324)
T ss_dssp C-CHHHHHHTC
T ss_pred H-HHHHHHHHC
T ss_conf 9-999998755
No 5
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=100.00 E-value=1.6e-41 Score=277.28 Aligned_cols=266 Identities=18% Similarity=0.195 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
+|.+.+++|++.+.. +++|++|+++|+..++.|..|++ ..++.+++..++..|+.++...+ +++|+++.+
T Consensus 2 Tl~e~l~~y~~~~~~-~~l~~~T~~~y~~~l~~~~~~~g--------~~~l~~it~~~i~~~~~~~~~~~-~~~t~~~~~ 71 (283)
T 1z19_A 2 TLHSWLDRYEKILAS-RGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGYIDEG-KAASAKLIR 71 (283)
T ss_dssp BHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHSC--------SCBGGGCCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--------CCCHHHCCHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_conf 299999999999987-69999999999999999999976--------99968799999999999999858-999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 44422223332101232222222222222212111111101567877653101356775775320122210011233222
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISE 172 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~E 172 (328)
+.|++||+||++.++++.||+..++.++.... .+.++.+|+.++++.+.... .+. ++++.+++.||||++|
T Consensus 72 ~~l~~~~~~a~~~~~i~~np~~~~~~~~~~~~-~~~lt~~e~~~i~~~~~~~~----~~~----~~~~~l~~~tG~R~~E 142 (283)
T 1z19_A 72 STLSDAFREAIAEGHITTNHVAATRAAKSKVR-RSRLTADEYLKIYQAAESSP----CWL----RLAMELAVVTGQRVGD 142 (283)
T ss_dssp HHHHHHHHHHHHTTSCSCCTTTTSCCCCCCCC-CCCCCHHHHHHHHHHGGGSC----HHH----HHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHCCC----HHH----HHHHHHHHHHCCCHHH
T ss_conf 99999999999859865481765005534777-77688999999999871488----899----9999999997878655
Q ss_pred CCCCCCCCCCCCCCCEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 221122222332322033-2378531000112210023432211100123446655432111122111000123567899
Q gi|254780882|r 173 ALSLTPQNIMDDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLR 251 (328)
Q Consensus 173 l~~L~~~did~~~~~i~v-~gKg~K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~ 251 (328)
+++|+|+||+.+ .+.| ..|+++.+.+|++...........+..........++++|++.+|++++..+++..+++++
T Consensus 143 i~~L~~~di~~~--~~~i~~~K~~~~~~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (283)
T 1z19_A 143 LCEMKWSDIVDG--YLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRAR 220 (283)
T ss_dssp HTTCBGGGEETT--EEEEECTTTCCEEEEETTCEETTTTEEHHHHHHHHHHHHCSSBSSCCTTSSCCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHCCC--EEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 751929992188--049986688842461073878999998888887530357774023201324467157999999999
Q ss_pred HHCCCCC---CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9768699---988054179999999984899889999837888789799996
Q gi|254780882|r 252 RYLGLPL---STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 (328)
Q Consensus 252 ~~~gi~~---~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h 300 (328)
+.+|+.. ..++|+|||+ |+.++++|+|+..||++|||+|++||++|.+
T Consensus 221 ~~~~~~~~~~~~~~H~lR~~-~~~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~ 271 (283)
T 1z19_A 221 KASGLSFEGDPPTFHELRSL-SARLYEKQISDKFAQHLLGHKSDTMASQYRD 271 (283)
T ss_dssp HHTTCCCSSSCCCGGGHHHH-HHHHHHHHTCHHHHHHHHTCSSSCC------
T ss_pred HHHCCCCCCCCCCCCHHHHH-HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 98088767999972859999-9999986989999999838998899999842
No 6
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.2e-35 Score=235.75 Aligned_cols=188 Identities=20% Similarity=0.266 Sum_probs=151.5
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCH----HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC--------
Q ss_conf 11111101567877653101356775----775320122210011233222221122222332322033237--------
Q gi|254780882|r 126 PRALNEKQALTLVDNVLLHTSHETKW----IDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGK-------- 193 (328)
Q Consensus 126 p~~lt~~e~~~ll~~~~~~~~~~~~~----~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gK-------- 193 (328)
..+|+.+|+..+++.+.......... ...+..+|+.||+.||||+||+++|+|+|||++++++.|.++
T Consensus 23 ~~~l~~~Ei~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~TG~R~~El~~L~~~did~e~~~i~v~~~~~~~~~~~ 102 (244)
T 3nkh_A 23 NAYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDES 102 (244)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCCCHHHHHTCBGGGEETTTTEEEECCEEEEEECTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHCCCCCCEEEEECCCCCCCCCC
T ss_conf 89999999999999987632012321146679999999999998393689995191352166556257832410101036
Q ss_pred -----------CCCCCCCCCCCCCHHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf -----------8531000112210023432211100123----4466554321111221110001235678999768699
Q gi|254780882|r 194 -----------GDKIRIVPLLPSVRKAILEYYDLCPFDL----NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 (328)
Q Consensus 194 -----------g~K~R~Vpi~~~~~~~l~~yl~~~~~~~----~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~ 258 (328)
.++.|.|||++.+.+.|..|+...+... .....+++|++..|.|++..++++.|+++++.+|++.
T Consensus 103 ~~~~~~~~~k~~~~~R~i~i~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~~~s~~~~~~~~~~~~~~~gi~~ 182 (244)
T 3nkh_A 103 GGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDK 182 (244)
T ss_dssp SCEEEEECC---CCCEEEECCHHHHHHHHHHHHHHHHHHHHCTTCCCCSBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCS
T ss_pred CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 77421345567785068832088878899999986543203556787654122037972320010015778999818875
Q ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHHHCHHHHHHHHHHH
Q ss_conf 9880541799999999848998899998378887897-999961989999999999
Q gi|254780882|r 259 STTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTT-QIYTNVNSKNGGDWMMEI 313 (328)
Q Consensus 259 ~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT-~~Y~h~~~~~~~~~l~~~ 313 (328)
+++||+|||||||.|+++|+|+..||++|||+|++|| .+|+|++++..++.+.++
T Consensus 183 ~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~~Y~~~~~~~~~~~~~ki 238 (244)
T 3nkh_A 183 EVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKL 238 (244)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCHHHHHHHHCSTTHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 46763348999999998699999999983899889999984467999999999998
No 7
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=99.96 E-value=1.6e-30 Score=208.58 Aligned_cols=164 Identities=26% Similarity=0.346 Sum_probs=124.6
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 11111101567877653101356775775320122210011233222221122222332322033237853100011221
Q gi|254780882|r 126 PRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPS 205 (328)
Q Consensus 126 p~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~ 205 (328)
..+||++|+.++++++...... +.++++.+++.||||+||+++|+|+|||++...+ ..+|++++|.|||++.
T Consensus 4 ~~~Ls~eEi~~ll~~~~~~~~~-------~~~~~i~~~~~tG~R~~E~~~L~~~dI~~~~~~~-~~~K~~~~r~vpl~~~ 75 (170)
T 1aih_A 4 LAFLYERDIYRLLAECDNSRNP-------DLGLIVRICLATGARWSEAETLTQSQVMPYKITF-TNTKSKKNRTVPISDE 75 (170)
T ss_dssp CCCCCHHHHHHHHHHHTTSSST-------THHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEE-ESSSSSCEEEEECCHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEE-EECCCCCEEEECCHHH
T ss_conf 4689999999999986565897-------7999999999978569999858641046651256-6325662036264799
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 00234322111001234466554321111221110001235678999768699988054179999999984899889999
Q gi|254780882|r 206 VRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285 (328)
Q Consensus 206 ~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~ 285 (328)
+.++|..+ .+++|.... ..+... ......+++..++||+|||||||+|+++|+|+..||+
T Consensus 76 ~~~~l~~~------------~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~H~lRht~at~l~~~g~~~~~i~~ 135 (170)
T 1aih_A 76 LFDMLPKK------------RGRLFNDAY------ESFENA--VLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKE 135 (170)
T ss_dssp HHHHSCCC------------SSBSSCCCH------HHHHHH--HHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHH------------CCCCCCCCH------HHHHHH--HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999984------------277666204------678999--9888623687632130164899999986997999999
Q ss_pred HHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHH
Q ss_conf 8378887897999961989999999999998173000
Q gi|254780882|r 286 ILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHPSIT 322 (328)
Q Consensus 286 ~lGH~s~~tT~~Y~h~~~~~~~~~l~~~~~~~~~~~~ 322 (328)
+|||+|++||++|+|++.++.+ +++ ++||...
T Consensus 136 ~lGH~s~~~t~~Y~~~~~~~~~----~~~-~~~p~~~ 167 (170)
T 1aih_A 136 ILGHSTIEMTMRYAHFAPSHLE----SAV-KFNPLSN 167 (170)
T ss_dssp HHTCSSHHHHGGGGGGSCCCTT----HHH-HHSTTTS
T ss_pred HHCCCCHHHHHHHHCCCHHHHH----HHH-HHCCCCC
T ss_conf 8389989999998877999999----999-8586768
No 8
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=99.89 E-value=4.3e-24 Score=168.47 Aligned_cols=166 Identities=18% Similarity=0.183 Sum_probs=128.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 11111015678776531013567757753201222100112332222211222223323220332378531000112210
Q gi|254780882|r 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV 206 (328)
Q Consensus 127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~ 206 (328)
+.||.||+.++++++....+ + + ++++.|++.||||+||+++|+|+||+++...+ +..|+++.+.||+.+..
T Consensus 2 ~~lt~eE~~~l~~~~~~~~~----~--~--~~~~~l~~~TG~R~~E~~~L~~~di~~~~~~~-~~~k~~~~~~~~~~~~~ 72 (179)
T 1ae9_A 2 SRLTADEYLKIYQAAESSPC----W--L--RLAMELAVVTGQRVGDLCEMKWSDIVDGYLYV-EQSKTGVKIAIPTALHI 72 (179)
T ss_dssp CCCCHHHHHHHHHHGGGSCH----H--H--HHHHHHHHHHCCCHHHHHHCBGGGEETTEEEE-ECTTTCCEEEEETTCEE
T ss_pred CCCCHHHHHHHHHHHHHCCH----H--H--HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-EECCCCEEEEEECCHHH
T ss_conf 99999999999998756889----9--9--99999999975759999836201033401478-74255303455466889
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---CCCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 02343221110012344665543211112211100012356789997686---999880541799999999848998899
Q gi|254780882|r 207 RKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGL---PLSTTAHTLRHSFATHLLSNGGDLRSI 283 (328)
Q Consensus 207 ~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi---~~~~spH~lRHtfAt~ll~~G~~~~~v 283 (328)
...+..+..............++|.+..|+++........+.++.+.++. ....++|++||++++ ++++|+|+..|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~g~~~~~i 151 (179)
T 1ae9_A 73 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSAR-LYEKQISDKFA 151 (179)
T ss_dssp GGGTEEHHHHHHHHHHHTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHHHHH-HHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHCCCCHHHH
T ss_conf 99999998877531135776411103577754442047899999999852356540148789999999-99959999999
Q ss_pred HHHHCCCCHHHHHHHHHHC
Q ss_conf 9983788878979999619
Q gi|254780882|r 284 QSILGHFRLSTTQIYTNVN 302 (328)
Q Consensus 284 ~~~lGH~s~~tT~~Y~h~~ 302 (328)
|++|||+|++||++|.+..
T Consensus 152 ~~~~GH~s~~~t~~Y~~~~ 170 (179)
T 1ae9_A 152 QHLLGHKSDTMASQFRDDR 170 (179)
T ss_dssp HHHHTC--------CEECS
T ss_pred HHHHCCCCHHHHHHHHHCC
T ss_conf 9983899999999998566
No 9
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=99.74 E-value=7.3e-18 Score=129.52 Aligned_cols=111 Identities=15% Similarity=0.276 Sum_probs=97.9
Q ss_pred CHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 04314989999999999999986254889999999999999999985121478878968989999999999998612101
Q gi|254780882|r 6 LPEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGD 85 (328)
Q Consensus 6 ~~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~ 85 (328)
|.+..+.++.+++|+||+++. +++|++|+++|+.+++.|..||+.. ++..+.+++..++.+|+.++.++|+++
T Consensus 1 mt~~~~~t~~e~ie~yl~~~~--~~ls~~T~~~Y~~~l~~f~~~l~~~-----~~~~l~~it~~~l~~y~~~l~~~g~s~ 73 (117)
T 3nrw_A 1 MTERPSLSPREARDRYLAHRQ--TDAADASIKSFRYRLKHFVEWAEER-----DITAMRELTGWKLDEYETFRRGSDVSP 73 (117)
T ss_dssp ---CCCCCHHHHHHHHHHHHT--TTSCHHHHHHHHHHHHHHHHHHHHT-----TCCSGGGCCHHHHHHHHHHHHTSSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHCCHHHHHHHHHHHHHCCHHH
T ss_conf 999999999999999999978--1868999999999999999999986-----337887688999999999987122268
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 33211234442222333210123222222222222221
Q gi|254780882|r 86 RSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 (328)
Q Consensus 86 ~T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~ 123 (328)
+|+++++++||+||+||++.|+++.||+..|+.||.-+
T Consensus 74 ~Ti~~~~~~lr~f~~~~~~~~~i~~np~~~V~~Pkv~~ 111 (117)
T 3nrw_A 74 ATLNGEMQTLKNWLEYLARIDVVDEDLPEKVHVPTILE 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCTTSGGGCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC
T ss_conf 89969988999999999998996759999787998120
No 10
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=99.44 E-value=4e-13 Score=99.91 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
++.+.+++|+..++. +++|++|..+|...++.+..++ +..++.+++..+++.|+..+.+.+ +++|+++.+
T Consensus 2 Tl~~~~~~yl~~~~~-~~~~~~T~~~y~~~l~~~~~~~--------g~~~l~~it~~~i~~~~~~~~~~~-~~~t~~~~~ 71 (103)
T 2oxo_A 2 TLHSWLDRYEKILAS-RGIKQKTLINYMSKIKAIRRGL--------PDAPLEDITTKEIAAMLNGYIDEG-KAASAKLIR 71 (103)
T ss_dssp BHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHS--------CSCBGGGCCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_conf 699999999999988-7999999999999999999998--------689677764698999999999847-715899999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 444222233321012322222222222222
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNILNMRNLKKS 122 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~ 122 (328)
+.|+++|+||++.|+++.||+.+++.||.+
T Consensus 72 ~~l~~~f~~Av~~g~i~~NP~~~vk~pk~k 101 (103)
T 2oxo_A 72 STLSDAFREAIAEGHITTNHVAATRAAKSE 101 (103)
T ss_dssp HHHHHHHHHHHHTTSCSSCTTC--------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHCCCCCCC
T ss_conf 999999999998889576954316667878
No 11
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=99.39 E-value=2.4e-13 Score=101.28 Aligned_cols=109 Identities=11% Similarity=0.158 Sum_probs=92.2
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31498999999999999998625488999999999999999998512147887896898999999999999861210133
Q gi|254780882|r 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRS 87 (328)
Q Consensus 8 ~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T 87 (328)
|..+.++.+.++.|++... ..+++++|+++|+..++.++.+ .++..++.+|+..++.+|+..+.++|++++|
T Consensus 3 ep~~iTl~~~~~~w~~~~~-~~~~~~~T~~~y~~~~~~~i~~-------~~g~~~l~~It~~~i~~~~~~l~~~~~s~~t 74 (117)
T 2kkp_A 3 EPSKITVEQWLNRWLTDYA-KPHLRQSTWESYETVLRLHVIP-------TLGSIPLKKLQPADIQRLYASKLESGLSPTR 74 (117)
T ss_dssp CSCCSCHHHHHHHHHHHHT-SCCCSCCCCSHHHHHHHHHHCC-------CCCTSCTTTCCHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHH-------HHCCCCHHHCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 9884889999999999988-7789999999999999999999-------9788809997779999888877625741778
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 2112344422223332101232222222222222212
Q gi|254780882|r 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 (328)
Q Consensus 88 ~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~ 124 (328)
+++.++.|+++|+||++.|+|+.||+.+|+.||.+.+
T Consensus 75 ~~~~~~~l~~~~~~Av~~~~i~~NP~~~vk~Pk~P~~ 111 (117)
T 2kkp_A 75 VRYIHVVLHEAMSQARESGLLLQNPTEAAKPPRHPLE 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCSSCGGGGSCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCC
T ss_conf 9789999999999999986905290731978999865
No 12
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=99.38 E-value=9.8e-13 Score=97.51 Aligned_cols=107 Identities=8% Similarity=0.120 Sum_probs=90.7
Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14989999999999999986254889999999999999999985121478878968989999999999998612101332
Q gi|254780882|r 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 (328)
Q Consensus 9 ~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~ 88 (328)
+.+.++.+.++.|++... .+++++|+++|+..++.++... ++...+.+++..++..|+..+...++|++|+
T Consensus 3 ps~~Tf~~~~~~w~~~~~--~~~~~~T~~~y~~~~~~~i~~~-------~g~~~l~~i~~~~i~~~~~~~~~~~~s~~t~ 73 (118)
T 2kd1_A 3 PSKLSYGEYLESWFNTKR--HSVGIQTAKVLKGYLNSRIIPS-------LGNIKLAKLTSLHMQNYVNSLRDEGLKRGTI 73 (118)
T ss_dssp CSCSBHHHHHHHHHHHHH--HHHCHHHHHHHHHHHTTTHHHH-------TTSSBGGGCCHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH-------HCCCCHHHCCHHHHHHHHHHHHCCCCCHHHH
T ss_conf 641589999999999983--7289999999999999999998-------6887699989999999987400011589999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 112344422223332101232222222222222212
Q gi|254780882|r 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 (328)
Q Consensus 89 ~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~ 124 (328)
++.++.|+++|+||++.|+++.||+.+++.||..++
T Consensus 74 ~~~~~~l~~~~~~Av~~~~i~~NP~~~ik~pk~~kk 109 (118)
T 2kd1_A 74 EKIIKVIRNSLEHAIDLELITKNVAAKTKLPKADKE 109 (118)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCTTTTCCCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCC
T ss_conf 999999999999999886935393630938999986
No 13
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343}
Probab=99.34 E-value=5.5e-13 Score=99.04 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 9999999999999986254889999999999999999985121478878968989999999999998-612101332112
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR-TQKIGDRSLKRS 91 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~-~~~~s~~T~~~~ 91 (328)
++.+.+++|+... ++++|++|+++|+..++.|..|+ +..++.+++..++..|+.++. ..+++++|++++
T Consensus 9 tf~~~~~~~l~~~--~~~~s~~T~~~Y~~~l~~~~~~~--------~~~~~~~it~~~i~~f~~~l~~~~~~s~~Ti~~~ 78 (112)
T 2key_A 9 SFHDFVASYMKTY--SRRLEIGTFRHHKSCMRKFKEYC--------EGLQFHELTEDFLRDYLIYMKKTLCNADSTAQRN 78 (112)
T ss_dssp SHHHHHHHHTHHH--HTTSCHHHHHHHHHHHHHTTTSC--------SCCCTTTCCHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH--------CCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999999998--64799999999999999999984--------5599898699989999999987327770366999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 344422223332101232222222222
Q gi|254780882|r 92 LSGIKSFLKYLKKRKITTESNILNMRN 118 (328)
Q Consensus 92 ls~lr~f~~~~~~~~~i~~np~~~i~~ 118 (328)
++.||+||+||+++|+|..||+..++.
T Consensus 79 l~~lr~~~~~A~~~g~i~~nPf~~~~l 105 (112)
T 2key_A 79 LSTIKIYVSAAIKKGYMENDPFKDFGL 105 (112)
T ss_dssp HHHHHHHHHHHHHTTSCCSCHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 999999999999887943188212464
No 14
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=99.33 E-value=5.5e-12 Score=92.84 Aligned_cols=102 Identities=11% Similarity=0.225 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
++.+++++||...+ .+++++|.+.|+..++.++.++ +..++.+|+..++..|+..+.+. .|++|+++.+
T Consensus 1 Tf~~~~~~wl~~~~--~~~k~st~~~~~~~~~~~~~~l--------g~~~l~~It~~~i~~~~~~l~~~-~s~~t~~~~~ 69 (111)
T 2kiw_A 1 TFKQVADDWLKQYA--NDVKVSSVRAREKAIQHAIERF--------NTKPIQTIKKHDYQRFVDDISAQ-YSKNYVDSIV 69 (111)
T ss_dssp CHHHHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHT--------TSSCGGGCCHHHHHHHHHHHHTT-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHH--------CCCCCHHHCCHHHHHHHHHHHHH-CCHHHHHHHH
T ss_conf 99999999999987--5089999999999999999998--------78834121004589999999975-0499999899
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 444222233321012322222222222222121
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSNSL 125 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~~ 125 (328)
+.|+++|+||+++|+|+.||+.+|+.||..+..
T Consensus 70 ~~l~~~f~~A~~~~~i~~NP~~~v~~pk~~~~~ 102 (111)
T 2kiw_A 70 ASTNMIFKYAYDTRLIKAMPSEGIKRPKKKVSV 102 (111)
T ss_dssp HHHHHHHHHHHHTTSCSCCTTTTCCCCSCCCCC
T ss_pred HHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCH
T ss_conf 999999999998789120907408578887777
No 15
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=99.26 E-value=1.2e-11 Score=90.76 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
++.+.++.|++..+. .++|++|+..|+..++.++.+++. .++.+|+..+++.|+. ..+.|++|+++.+
T Consensus 3 Tf~~~~~~wl~~~~~-~~~~~~T~~~~~~~~~~~~~~lg~--------~~l~~It~~~i~~~l~---~~~~s~~t~~~~~ 70 (108)
T 2kob_A 3 SFGDWAEKFLKSKEA-DGVSVSQLNSYKNYCRNHLSPLYM--------KSLSEILPADIQSIIN---ETKLAKNTLKAIR 70 (108)
T ss_dssp BHHHHHHHHHHHHHH-HTCCHHHHHHHHHHHHHTSHHHHT--------SBGGGCCHHHHHHHHH---HCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHH---HHCCCHHHHHHHH
T ss_conf 399999999997472-898999999999999999999868--------8199987889999998---7332668999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 4442222333210123222222222222221
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNILNMRNLKKSN 123 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~~i~~~k~~~ 123 (328)
+.|+++|+||++.++|+.||+.+|+.||...
T Consensus 71 ~~l~~~f~~Av~~~~i~~NP~~~vk~Pk~~p 101 (108)
T 2kob_A 71 NTASQIFRLAIENRAIDFNPADYVRIPKIAL 101 (108)
T ss_dssp HHHHHHHHHHHHTTSSSSCGGGTCCCCCCCC
T ss_pred HHHHHHHHHHHHCCCCCCCHHHCCCCCCCCC
T ss_conf 9999999999988880229162386899984
No 16
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=99.25 E-value=1.5e-11 Score=90.16 Aligned_cols=101 Identities=10% Similarity=0.161 Sum_probs=85.0
Q ss_pred HCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 14989999999999999986254889999999999999999985121478878968989999999999998612101332
Q gi|254780882|r 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSL 88 (328)
Q Consensus 9 ~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~ 88 (328)
+...+|.|.+++|++..+ ..+++++|..+|+..++.+..+++ ..++.+|+..+++.|+..+. +++|++|+
T Consensus 3 p~k~tl~d~~~~Wl~~~k-~~~~~~~T~~~y~~~~~~i~~~~g--------~~~l~~It~~~i~~~~~~l~-~~~s~~tv 72 (112)
T 3lys_A 3 PIKQEISEYFKDWMELYK-KNAIDEMTYKGYEQTLKYLKTYMP--------NVLISEITASSYQRALNKFA-ETHAKAST 72 (112)
T ss_dssp CCCSBHHHHHHHHHHHHT-TTTSCHHHHHHHHHHHHHHHHHSS--------SCBTTTCCHHHHHHHHHHHH-TTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHC--------CCCHHHCCHHHHHHHHHHHC-CCCCHHHH
T ss_conf 660779999999999972-288999999999999999999988--------08020079999999999732-46426899
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 1123444222233321012322222222222
Q gi|254780882|r 89 KRSLSGIKSFLKYLKKRKITTESNILNMRNL 119 (328)
Q Consensus 89 ~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~ 119 (328)
++.++.|+++|+||+.+|+|+.||+.+|+..
T Consensus 73 ~~~~~~l~~~~~~Av~~g~I~~NP~~~v~i~ 103 (112)
T 3lys_A 73 KGFHTRVRASIQCLIEEGRLQKDFTTRAVVK 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCTTSSTTCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEC
T ss_conf 9999999999999998869030888888767
No 17
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.22 E-value=3.2e-11 Score=88.04 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999986254889999999999999999985121478878968989999999999998612101332112
Q gi|254780882|r 12 FELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRS 91 (328)
Q Consensus 12 ~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ 91 (328)
.++.+.+++|++.... .+++|+|+.+|+..++.+..++ +...+.+++..+++.|+..+. ++.|++|+++.
T Consensus 2 iTf~~~~~~w~~~~~~-~~~~~~T~~~y~~~~~~i~~~~--------g~~~l~~it~~~i~~~~~~l~-~~~s~~t~~~~ 71 (110)
T 2khq_A 2 ITFADYFYQWYEVNKL-PHVSESTKRHYESAYKHIKDHF--------RHKLLKDIKRTEYQKFLNEYG-LTHSYETIRKL 71 (110)
T ss_dssp CBHHHHHHHHHHHHTG-GGSCHHHHHHHHHHHHHHHHHC--------SSCBGGGCCHHHHHHHHHHHH-HHSCHHHHHHH
T ss_pred EEHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH--------CCCCHHHCCHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 8289999999999762-7789999999999999999996--------746040078999999999998-64128999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 34442222333210123222222222222
Q gi|254780882|r 92 LSGIKSFLKYLKKRKITTESNILNMRNLK 120 (328)
Q Consensus 92 ls~lr~f~~~~~~~~~i~~np~~~i~~~k 120 (328)
++.|+++|+||+.+|+++.||+.+|+.+.
T Consensus 72 ~~~l~~~~~~Av~~~~i~~NP~~~vkl~~ 100 (110)
T 2khq_A 72 NSYIRNAFDDAIHEGYVIKNPTYKAELHA 100 (110)
T ss_dssp HHHHHHHHHHHHHTTCCCCCGGGGCCCCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEECC
T ss_conf 99999999999988791019876877572
No 18
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=98.75 E-value=1.2e-08 Score=72.02 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=79.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 43149899999999999999862548899999999999999999851214788789689899999999999986121013
Q gi|254780882|r 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 (328)
Q Consensus 7 ~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~ 86 (328)
.+....|+.+.+++|++. .+.++++|...|...++ .++ .+.++..++.+|+..+|..++..+...| ++.
T Consensus 2 ~~~~~~TF~~va~~Wle~---~~~~~~~t~~~~~~~l~---~~i----~P~lG~~~i~~It~~di~~~l~~i~~~g-~~~ 70 (121)
T 2kkv_A 2 ENSGAYTFETIAREWHES---NKRWSEDHRSRVLRYLE---LYI----FPHIGSSDIRQLKTSHLLAPIKEVDTSG-KHD 70 (121)
T ss_dssp CSCCCCSHHHHHHHHHTT---CCSSCHHHHHHHHHHHH---HHH----SSSSTTSCTTCCCSGGGHHHHHHHHHTT-THH
T ss_pred CCCHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHH---HHH----HHHHCCCCHHHHHHHHHHHHHHHHHHCC-CHH
T ss_conf 430633899999999998---79777618999999999---899----9993886599973999999999999919-979
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 3211234442222333210123222222222
Q gi|254780882|r 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMR 117 (328)
Q Consensus 87 T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~ 117 (328)
|.++.++.++++|+||+..|+++.||+.+++
T Consensus 71 ta~r~~~~l~~if~~Av~~g~i~~NP~~~i~ 101 (121)
T 2kkv_A 71 VAQRLQQRVTAIMRYAVQNDYIDSNPASDMA 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCSCSCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 9999999999999999986880228577898
No 19
>2kj5_A Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=98.64 E-value=5e-08 Score=68.11 Aligned_cols=107 Identities=9% Similarity=0.087 Sum_probs=78.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 43149899999999999999862548899999999999999999851214788789689899999999999986121013
Q gi|254780882|r 7 PEIVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR 86 (328)
Q Consensus 7 ~~~~~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~ 86 (328)
.+....++.++++.|++.... + ...|...|++.+.. +..+.++..++.+|+..++..|++.+... .++.
T Consensus 2 aek~~~T~~~l~~~w~e~~~~--~-~~~~~~~~~~~~~~-------~i~p~~G~~~i~~It~~~i~~~~~~i~~~-~~~~ 70 (116)
T 2kj5_A 2 AEKNAYTVAQLADEYFERMIA--G-RWKHPNIVRSRIEK-------DIKPAIGSLKVEDVKPRHIDDVLKAVMKR-GAPS 70 (116)
T ss_dssp CSSSCCBHHHHHHHHHHHHTT--T-SCSCHHHHHHHHHH-------TTSCSGGGSBSSSCCHHHHHHHHHHHHHH-TCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH--C-CCCHHHHHHHHHHH-------HHHHHHCCCCHHHCCHHHHHHHHHHHHHH-CCCH
T ss_conf 765543399999999998604--7-88819999999997-------84898787808870899999999999983-6657
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 32112344422223332101232222222222222212
Q gi|254780882|r 87 SLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNS 124 (328)
Q Consensus 87 T~~~~ls~lr~f~~~~~~~~~i~~np~~~i~~~k~~~~ 124 (328)
|+++.++.|+++|+||++.++++.||+.+|+.++...+
T Consensus 71 ta~~~~~~l~~i~~~A~~~~~i~~NP~~~i~~~~~g~k 108 (116)
T 2kj5_A 71 IANDTLRWLKRMFNYAIKRHIIEYNPAAAFDPGDAGGK 108 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSSCGGGGSCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 79999999999999999877956697244972458963
No 20
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=98.63 E-value=4.2e-08 Score=68.53 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998625488999999999999999998512147887896898999999999999861210133211
Q gi|254780882|r 11 SFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKR 90 (328)
Q Consensus 11 ~~~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~ 90 (328)
..++.+.+++|++. ...+++.|...|.+.++. +..+.++..++.+|+..+|..++..+...| ++.|+++
T Consensus 10 ~~TF~~va~~W~e~---k~~~~~~t~~~~~~~l~~-------~i~P~~G~~~i~~It~~~i~~~l~~i~~~g-~~~ta~r 78 (118)
T 2kj9_A 10 TRAFKTVAKSWFAT---KTTWSEDYQRSVWTRLET-------YLFPDIGNKDIAELDTGDLLVPIKKIEKLG-YLEIAMR 78 (118)
T ss_dssp CSBHHHHHHHHHHT---CCSSCHHHHHHHHHHHHH-------TSSTTGGGSBGGGCCHHHHHHHHHHHHTTT-CHHHHHH
T ss_pred CCCHHHHHHHHHHH---CCCCCHHHHHHHHHHHHH-------HHHHHHCCCCHHHHCHHHHHHHHHHHHHHC-CHHHHHH
T ss_conf 46799999999988---688888799999999997-------888985885699955599999999999935-8899999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2344422223332101232222222222
Q gi|254780882|r 91 SLSGIKSFLKYLKKRKITTESNILNMRN 118 (328)
Q Consensus 91 ~ls~lr~f~~~~~~~~~i~~np~~~i~~ 118 (328)
.++.|+.+|+||+..|+++.||+.+|+.
T Consensus 79 ~~~~l~~if~~Av~~g~i~~NP~~~i~~ 106 (118)
T 2kj9_A 79 VKQYATAIMRYAVQQKMIRFNPAYDLEG 106 (118)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCHHHHCCS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 9999999999999878833385888987
No 21
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=98.61 E-value=4.4e-08 Score=68.41 Aligned_cols=95 Identities=6% Similarity=0.000 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
++.+.+++|++..+ ..++++|...|...++.. +. +.+|..++.+|+..+|..++..+..+| ++.|+++.+
T Consensus 6 TF~~~a~eWle~~k--~~~~~~t~~~~~~~l~~~---i~----P~lG~~~i~~It~~~i~~~l~~i~~~g-~~~ta~r~~ 75 (118)
T 2kj8_A 6 SFSAIYKEWYEHKK--QVWSVGYATELAKMFDDD---IL----PIIGGLEIQDIEPMQLLEVIRRFEDRG-AMERANKAR 75 (118)
T ss_dssp BHHHHHHHHHHHHT--TTSCHHHHHHHHHHHHHH---HH----HHHTTSBTTSCCHHHHHHHHHHHHTTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHH---HH----HHHCCCCHHHHCHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_conf 79999999999852--438887999999999988---78----884898299937999999999999959-979999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 4442222333210123222222222
Q gi|254780882|r 93 SGIKSFLKYLKKRKITTESNILNMR 117 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~~np~~~i~ 117 (328)
+.++++|+||+..|+++.||+.+++
T Consensus 76 ~~l~~if~~Av~~~~i~~NP~~~i~ 100 (118)
T 2kj8_A 76 RRCGEVFRYAIVTGRAKYNPAPDLA 100 (118)
T ss_dssp HHHHHHHHHHHHTTSCSCCSHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 9999999999985880238278898
No 22
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=97.97 E-value=4.4e-06 Score=55.93 Aligned_cols=92 Identities=8% Similarity=0.062 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862548899999999999999999851214788789689899999999999986121013321123
Q gi|254780882|r 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSL 92 (328)
Q Consensus 13 ~l~~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~l 92 (328)
|+.++.++|++..+.+ -.|+.|...|++.++.++ .+.+|-.++++|+..+|..++..+.. + ++.|.++.+
T Consensus 2 TF~evA~~w~~~~~~~-w~~~~~~~~~~~~l~~~i-------~P~iG~~~I~~I~~~~i~~~l~~~~~-~-~~~tA~r~~ 71 (106)
T 2khv_A 2 TFSECAALYIKAHRSS-WKNTKHADQWTNTIKTYC-------GPVIGPLSVQDVDTKLIMKVLDPIWE-Q-KPETASRLR 71 (106)
T ss_dssp BHHHHHHHHHHTTGGG-GTTSTHHHHHHHHHHHHT-------HHHHTTSBSSSCCHHHHHHHHHHHHH-H-CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH-------HHHCCCCCHHHHCHHHHHHHHHHHHH-H-HHHHHHHHH
T ss_conf 7999999999985013-799889999999999998-------88829992999688999999799996-5-199999999
Q ss_pred HHHHHHHHHHHHHCCCC-CCCCC
Q ss_conf 44422223332101232-22222
Q gi|254780882|r 93 SGIKSFLKYLKKRKITT-ESNIL 114 (328)
Q Consensus 93 s~lr~f~~~~~~~~~i~-~np~~ 114 (328)
+.++++|+||+..|++. .||+.
T Consensus 72 ~~~~~vf~~Ai~~g~~~~~NPA~ 94 (106)
T 2khv_A 72 GRIESVLDWATVRGYREGDNPAR 94 (106)
T ss_dssp HHHHHHHHHHHHHTSSCSCCTTS
T ss_pred HHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99999999999939867898276
No 23
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase, protelomerase, DNA distortion; 3.20A {Klebsiella phage PHIKO2}
Probab=97.27 E-value=0.00031 Score=44.39 Aligned_cols=134 Identities=16% Similarity=0.038 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEECC--C-CC----CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 221001123322222112222233-232203323--7-85----310001122100234322111001234466554321
Q gi|254780882|r 160 LYLLYGCGLRISEALSLTPQNIMD-DQSTLRIQG--K-GD----KIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFR 231 (328)
Q Consensus 160 ~~ll~~TGlR~~El~~L~~~did~-~~~~i~v~g--K-g~----K~R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~ 231 (328)
+.|+..||-|..|++. .+.+.. +...|.+.| | ++ ....||.--++..++..+...|.. .... .|.
T Consensus 286 iGLAlATGRR~~EILk--tg~F~~s~~ysLlFsGQaKKr~~~e~~syEIPTLidAdlVIkAikrLR~l-~~~e----~l~ 358 (558)
T 2v6e_A 286 FALAALSGRRMIEIML--QGEFSVAGKYTVTFLGQAKKRSEDKGISRKIYTLCDATLFVSLVNELRSC-PAAA----DFD 358 (558)
T ss_dssp HHHHHHHCCCHHHHHT--TCEEEECSSSEEEEECCTTCCCCSCCCEEEEECSSCHHHHHHHHHHHTTS-GGGT----THH
T ss_pred HHHHHHHCCCHHHHHH--CCEEEECCCCEEEEECHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCHH----CCC
T ss_conf 9999992764887640--05565479846998403310689987754643203589999999999837-1022----024
Q ss_pred C------CCCCCCCCCCH----HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH---------CCCCH-HHHHHHHCCCC
Q ss_conf 1------11221110001----23567899976869998805417999999998---------48998-89999837888
Q gi|254780882|r 232 G------IRGKPLNPGVF----QRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS---------NGGDL-RSIQSILGHFR 291 (328)
Q Consensus 232 ~------~~g~~ls~~~i----~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~---------~G~~~-~~v~~~lGH~s 291 (328)
+ ..+.......+ ...++.+.+..=.....++|++|+-+|-...+ +|++. ..++++|||.+
T Consensus 359 ~l~~~~~~~~~~~~N~~IN~~~a~~ln~~~k~lf~~~e~s~~DlRaIYa~IAf~~Ff~~d~r~k~vden~F~k~VLGHed 438 (558)
T 2v6e_A 359 EVIKGYGENDTRSENGRINAILATAFNPWVKTFLGDDRRVYKDSRAIYARIAYEMFFRVDPRWKNVDEDVFFMEILGHDD 438 (558)
T ss_dssp HHTTCSSTTCCCCHHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHHHHHHHTTTSGGGTTSCHHHHHHHHHTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHCCCC
T ss_conf 42222232112778999999999999999998478863300430668876667654355323126879999999857896
Q ss_pred HHHHHHHHH
Q ss_conf 789799996
Q gi|254780882|r 292 LSTTQIYTN 300 (328)
Q Consensus 292 ~~tT~~Y~h 300 (328)
++|+..|-+
T Consensus 439 idTq~hY~~ 447 (558)
T 2v6e_A 439 ENTQLHYKQ 447 (558)
T ss_dssp TTGGGSSCC
T ss_pred HHHHHHHHE
T ss_conf 144445653
No 24
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=97.12 E-value=0.00037 Score=43.95 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCEEE--CCCCCCCCCCCCCC-CCHHHHHHHHHHHCCCCCC
Q ss_conf 122210011233222-----------221122222332322033--23785310001122-1002343221110012344
Q gi|254780882|r 158 AILYLLYGCGLRISE-----------ALSLTPQNIMDDQSTLRI--QGKGDKIRIVPLLP-SVRKAILEYYDLCPFDLNL 223 (328)
Q Consensus 158 ~i~~ll~~TGlR~~E-----------l~~L~~~did~~~~~i~v--~gKg~K~R~Vpi~~-~~~~~l~~yl~~~~~~~~~ 223 (328)
+++.|+-.|++|+|- ++.|+.+||.++.+.|.+ .||.|+...+-|.+ .+...|....+ ..
T Consensus 126 ~~v~Lld~~~iRVGne~Y~~en~SyGlTTLr~~HV~i~~~~i~~~F~GK~Gv~~~~~i~d~~l~~~l~~l~~------~~ 199 (346)
T 3m4a_A 126 LMTRLLHVARFRVGSDIYARQHKTYGLSTLRQRHVVVDGNTVTFRFKGKHGVSQHKATSDRTLAANMQKLLD------LP 199 (346)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHHCCCCGGGCBGGGEEEETTEEEEEEECGGGCEEEEEECCHHHHHHHHHHHT------SC
T ss_pred HHHHHHHHHCCCCCCCCCHHHCCCCCEEEEECCCEEEECCEEEEEEECCCCEEEEEEECCHHHHHHHHHHHH------CC
T ss_conf 999999984330688210121498150021003358868969999976887388877468899999999984------57
Q ss_pred CCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCCC-------------HHH
Q ss_conf 6655432111122---11100012356789997686999880541799999999-----84899-------------889
Q gi|254780882|r 224 NIQLPLFRGIRGK---PLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-----SNGGD-------------LRS 282 (328)
Q Consensus 224 ~~~~~lF~~~~g~---~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll-----~~G~~-------------~~~ 282 (328)
....++|....|+ +++...++.+++.+. | .+|+-+||--.||.++ +.+.+ +..
T Consensus 200 g~~lf~~~~~~~g~~~~v~s~dVN~YLk~~~---g---~~TaKdFRTw~at~~~~~~L~~~~~~~s~~~~kk~i~~ai~~ 273 (346)
T 3m4a_A 200 GPWLFQTVDAGGGERRRIHSTELNAYLREVI---G---PFTAKDFRTWGGTLLAAEYLAQQGTESSERQAKKVLVDCVKF 273 (346)
T ss_dssp SSBSCEEECCCC-CEEECCHHHHHHHHHHHH---T---TSCHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHCCCCCCCEECCCHHHHHHHHHHHC---C---CCCHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 8153310015688710167999999999866---9---987313034354999999998367889989999999999999
Q ss_pred HHHHHCCCCHHHH-HHHHH
Q ss_conf 9998378887897-99996
Q gi|254780882|r 283 IQSILGHFRLSTT-QIYTN 300 (328)
Q Consensus 283 v~~~lGH~s~~tT-~~Y~h 300 (328)
|++.||| ..+++ .-|.|
T Consensus 274 VA~~Lgn-TpaVcRksYI~ 291 (346)
T 3m4a_A 274 VADDLGN-TPAVTRGSYIC 291 (346)
T ss_dssp HHHHHTS-CHHHHHHHTSC
T ss_pred HHHHHCC-CHHHHHHHCCC
T ss_conf 9998489-75445564378
No 25
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Probab=96.20 E-value=0.0023 Score=38.94 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCEEE--CCCCCCCCCCCC--CCCCHHHHHHHHHHHCCCCC
Q ss_conf 122210011233222-----------221122222332322033--237853100011--22100234322111001234
Q gi|254780882|r 158 AILYLLYGCGLRISE-----------ALSLTPQNIMDDQSTLRI--QGKGDKIRIVPL--LPSVRKAILEYYDLCPFDLN 222 (328)
Q Consensus 158 ~i~~ll~~TGlR~~E-----------l~~L~~~did~~~~~i~v--~gKg~K~R~Vpi--~~~~~~~l~~yl~~~~~~~~ 222 (328)
+++.|+-.|.+|+|- ++.|+.+||.+..+.|.+ .||.|+.+.+-| .+.+...|....+ .
T Consensus 119 ~~v~Lld~~~iRVGne~Ya~~N~SyGlTTLr~rHV~v~g~~i~f~F~GK~Gv~~~~~i~~d~~l~~~l~~~~~------~ 192 (314)
T 2h7g_X 119 VFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDKIVIKFVGKDKVSHEFVVHKSNRLYKPLLKLTD------D 192 (314)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHHCCCCSTTCBGGGEEEETTEEEEEEECGGGCEEEEEEETTSTTHHHHHHHCC------T
T ss_pred HHHHHHHHHCEECCCHHHHHCCCCCCEEEEECCCEEEECCEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHH------C
T ss_conf 9999998622415774322205981500201011778799799998758884589996265899999999975------5
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH--------CCC-----------CHHHH
Q ss_conf 46655432111122111000123567899976869998805417999999998--------489-----------98899
Q gi|254780882|r 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLS--------NGG-----------DLRSI 283 (328)
Q Consensus 223 ~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~--------~G~-----------~~~~v 283 (328)
..++.++|. .++.+.++..++ .. .+|+.+||-..||.++. ... -+..|
T Consensus 193 ~~~~~~lf~-----~v~~~~vn~~l~----~~----~~taKdFRTw~at~~a~~~l~~~~~~~~~~~~~kk~i~~~i~~v 259 (314)
T 2h7g_X 193 SSPEEFLFN-----KLSERKVYESIK----QF----GIRIKDLRTYGVNYTFLYNFWTNVKSISPLPSPKKLIALTIKQT 259 (314)
T ss_dssp TCTTSBSST-----TCCHHHHHHHHG----GG----TSCHHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHH
T ss_pred CCCHHEEEE-----ECCCHHHHHHHH----HC----CCHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 781015754-----446267899888----35----84078898646259999999851676675678899999999999
Q ss_pred HHHHCCCCHHHH-HHHHH
Q ss_conf 998378887897-99996
Q gi|254780882|r 284 QSILGHFRLSTT-QIYTN 300 (328)
Q Consensus 284 ~~~lGH~s~~tT-~~Y~h 300 (328)
++.|||+- .+. .-|.|
T Consensus 260 A~~LgNTp-aVcR~sYIh 276 (314)
T 2h7g_X 260 AEVVGHTP-SISKRAYMA 276 (314)
T ss_dssp HHHHTCCT-TTHHHHSTH
T ss_pred HHHHCCCH-HHHHHHCCC
T ss_conf 99838975-555674579
No 26
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=95.12 E-value=0.048 Score=30.73 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999986121013321123444222233321012
Q gi|254780882|r 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKI 107 (328)
Q Consensus 70 ~i~~~l~~l~~~~~s~~T~~~~ls~lr~f~~~~~~~~~ 107 (328)
-++.|+..+ ..+++++|+..|...|+.|++|+...+.
T Consensus 12 ~ie~yl~~~-~~~ls~~T~~~Y~~~l~~f~~~l~~~~~ 48 (117)
T 3nrw_A 12 ARDRYLAHR-QTDAADASIKSFRYRLKHFVEWAEERDI 48 (117)
T ss_dssp HHHHHHHHH-TTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999997-8186899999999999999999998633
No 27
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=95.08 E-value=0.013 Score=34.18 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCC-----------CCCCCCCCCCCCC-CCCEEE--CCCCCCCC--CCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 2221001123322-----------2221122222332-322033--23785310--001122100234322111001234
Q gi|254780882|r 159 ILYLLYGCGLRIS-----------EALSLTPQNIMDD-QSTLRI--QGKGDKIR--IVPLLPSVRKAILEYYDLCPFDLN 222 (328)
Q Consensus 159 i~~ll~~TGlR~~-----------El~~L~~~did~~-~~~i~v--~gKg~K~R--~Vpi~~~~~~~l~~yl~~~~~~~~ 222 (328)
++.|+-.|++|+| -++.|+.+||.+. .+.|.+ .||+|+.+ .|.+.+.+...|....+ .
T Consensus 280 av~LID~~alRvGnEkya~en~T~GltTLr~eHV~l~~~~~v~fdF~GK~gvr~~~~v~~d~~v~k~L~~~~~------~ 353 (432)
T 2b9s_A 280 AMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTR------R 353 (432)
T ss_dssp HHHHHHHHCCCCCCCCCTTSCCCCCGGGCBGGGEEECTTSEEEEEEECGGGCEEEEEEECCHHHHHHHHHHHT------T
T ss_pred HHHHHHHHCCCCCCHHHHHCCCCEEECCCCHHHEEECCCCEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHH------C
T ss_conf 9999997384348831100279784453547544764898799997477671799997237899999999975------6
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 4665543211112211100012356789997686999880541799999999
Q gi|254780882|r 223 LNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 (328)
Q Consensus 223 ~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll 274 (328)
..+++.||- .++...++. +.+.+| ..+|+.+||--.||.++
T Consensus 354 k~pgd~LF~-----~I~s~~vN~----yLk~~~--~g~TAKdFRTwnAS~tl 394 (432)
T 2b9s_A 354 KSPGMDIFD-----QLNPTQLND----HLKSFM--DGLSAKVFRTYNASITL 394 (432)
T ss_dssp CCTTSBTTT-----TCCHHHHHH----HHTTTS--TTCCTTHHHHHHHHHHH
T ss_pred CCCHHHHCC-----CCCHHHHHH----HHHHHC--CCCCEECCCCCHHHHHH
T ss_conf 798376207-----389899999----999868--99982262143469999
No 28
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343}
Probab=93.60 E-value=0.14 Score=27.76 Aligned_cols=32 Identities=9% Similarity=0.324 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999861210133211234442222333
Q gi|254780882|r 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYL 102 (328)
Q Consensus 70 ~i~~~l~~l~~~~~s~~T~~~~ls~lr~f~~~~ 102 (328)
.+..|+... .++++++|+..+.++++.|..|+
T Consensus 13 ~~~~~l~~~-~~~~s~~T~~~Y~~~l~~~~~~~ 44 (112)
T 2key_A 13 FVASYMKTY-SRRLEIGTFRHHKSCMRKFKEYC 44 (112)
T ss_dssp HHHHHTHHH-HTTSCHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999998-64799999999999999999984
No 29
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=93.13 E-value=0.11 Score=28.46 Aligned_cols=98 Identities=27% Similarity=0.324 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCC------C------CCCCCCCCCCCC------CCCEE--ECCCCCC--CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 221001123322------2------221122222332------32203--3237853--100011221002343221110
Q gi|254780882|r 160 LYLLYGCGLRIS------E------ALSLTPQNIMDD------QSTLR--IQGKGDK--IRIVPLLPSVRKAILEYYDLC 217 (328)
Q Consensus 160 ~~ll~~TGlR~~------E------l~~L~~~did~~------~~~i~--v~gKg~K--~R~Vpi~~~~~~~l~~yl~~~ 217 (328)
+.|+-.+.+|+| | ++.|+.+||.+. .+.|. ..||.+. +..|++.+.+...|.....
T Consensus 305 v~LID~lalRVGNEky~~EnadTvG~tTLR~eHV~l~~e~~~~~~~i~fdFlGKdgir~~~~V~vd~~v~knLk~~~~-- 382 (591)
T 1a31_A 305 LYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFME-- 382 (591)
T ss_dssp HHHHHHHCCCCCCCCCTTTSCCCCCGGGCBGGGCCEEEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHTTT--
T ss_pred HHHHHHHCCCCCCHHHHHHCCCCEEECCCCHHHEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHH--
T ss_conf 999987433047754453349977432473866353045567786389986067771676673479999999999986--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 012344665543211112211100012356789997686999880541799999999
Q gi|254780882|r 218 PFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL 274 (328)
Q Consensus 218 ~~~~~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll 274 (328)
...+++.|| ..++...++.+++. ++ ..+|+..||--.||..+
T Consensus 383 ----~K~p~d~LF-----~~I~s~~VN~yLke----~m--~glTAKdFRTwnAS~tl 424 (591)
T 1a31_A 383 ----NKQPEDDLF-----DRLNTGILNKHLQD----LM--EGLTAKVFRTYNASITL 424 (591)
T ss_dssp ----TCCTTSBTT-----TTCCHHHHHHHHHH----HS--TTCCHHHHHHHHHHHHH
T ss_pred ----CCCCCCCCC-----CCCCHHHHHHHHHH----HC--CCCCEEHHHHCCHHHHH
T ss_conf ----689701244-----32886888999998----64--89740011010158999
No 30
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=91.25 E-value=0.39 Score=25.01 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999862548899999999999999999851
Q gi|254780882|r 16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFY 53 (328)
Q Consensus 16 ~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~ 53 (328)
+.+++|+.++.. +|+|++|+..|...++.|+.|+...
T Consensus 50 ~~v~~y~~~l~~-~g~s~~Ti~~~l~~l~~~~~~~~~~ 86 (324)
T 1xo0_A 50 EDVRDYLLYLQA-RGLAVKTIQQHLGQLNMLHRRSGLP 86 (324)
T ss_dssp HHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999987-7999899999999988778998742
No 31
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=89.78 E-value=0.18 Score=27.13 Aligned_cols=38 Identities=13% Similarity=0.355 Sum_probs=25.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999998-612101332112344422223332101
Q gi|254780882|r 69 TEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRK 106 (328)
Q Consensus 69 ~~i~~~l~~l~-~~~~s~~T~~~~ls~lr~f~~~~~~~~ 106 (328)
..|..|++++. ++++|++|++.|...|+.|++|+...+
T Consensus 4 ~~i~~fl~~l~~er~ls~~T~~~Y~~~l~~f~~~l~~~~ 42 (290)
T 1a0p_A 4 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG 42 (290)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999869089999999999999999998859
No 32
>3bhw_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.50A {Magnetospirillum magneticum amb-1}
Probab=73.96 E-value=3.9 Score=18.81 Aligned_cols=19 Identities=11% Similarity=-0.018 Sum_probs=9.6
Q ss_pred CCCCCHHHHHHHHHHHCCC
Q ss_conf 1111015678776531013
Q gi|254780882|r 128 ALNEKQALTLVDNVLLHTS 146 (328)
Q Consensus 128 ~lt~~e~~~ll~~~~~~~~ 146 (328)
.|+.+++..+++......+
T Consensus 119 ~L~~~d~~~Fl~~~~~~~~ 137 (209)
T 3bhw_A 119 DLPRKMWDQYLEQCRNRDP 137 (209)
T ss_dssp BCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 8799999999999876587
No 33
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=47.23 E-value=12 Score=15.77 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 86999880541799999999848998899998378887897999961
Q gi|254780882|r 255 GLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNV 301 (328)
Q Consensus 255 gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~~Y~h~ 301 (328)
|-+..+||....+ |-.|+++|.++..|++.+|= |.+ -+|-++
T Consensus 1 GRp~kLt~~q~~~--a~~l~~~G~s~~~iA~~~gV-sr~--TlYryl 42 (52)
T 1jko_C 1 GRPRAINKHEQEQ--ISRLLEKGHPRQQLAIIFGI-GVS--TLYRYF 42 (52)
T ss_dssp CCCCSSCTTHHHH--HHHHHHTTCCHHHHHHTTSC-CHH--HHHHHS
T ss_pred CCCCCCCHHHHHH--HHHHHHCCCCHHHHHHHHCC-CHH--HHHHHC
T ss_conf 9798799999999--99999978989999999797-999--999985
No 34
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=31.62 E-value=21 Score=14.23 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=29.6
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 22111000123567899976869998805417999999998489988999983788878979
Q gi|254780882|r 235 GKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQ 296 (328)
Q Consensus 235 g~~ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~G~~~~~v~~~lGH~s~~tT~ 296 (328)
|+.+.+..+...+.+......-+..+|| |-.-.-.++..|.+...|++.||= |..|..
T Consensus 10 ~Gsy~p~~v~~ll~~~~~~~~~~~~LT~---rE~~vl~ll~~G~s~~eIA~~l~i-S~~TV~ 67 (99)
T 1p4w_A 10 HGSYTPESVAKLLEKISAGGYGDKRLSP---KESEVLRLFAEGFLVTEIAKKLNR-SIKTIS 67 (99)
T ss_dssp ---CCCSHHHHHHHHHHCCCCSSSSCCH---HHHHHHHHHHHTCCHHHHHHHHTS-CHHHHH
T ss_pred CEEECCHHHHHHHHHHHCCCCCCCCCCH---HHHHHHHHHHCCCCHHHHHHHHCC-CHHHHH
T ss_conf 8358979999999984237888899899---999999999938999999777299-899999
No 35
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein structure initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=25.00 E-value=12 Score=15.65 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHH-HHH
Q ss_conf 999999999862548899999-999
Q gi|254780882|r 18 RQNWLQNLEIERGLSKLTLQS-YEC 41 (328)
Q Consensus 18 ~e~~L~~l~~~r~~s~~T~~~-Y~~ 41 (328)
.++|=+-|-..++.|+..|+. |+.
T Consensus 27 ~kDyY~iLGV~~~AS~~EIKkAYRk 51 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRR 51 (329)
T ss_dssp -------------------------
T ss_pred CCCCHHHHCCCCCCCHHHHHHHHHH
T ss_conf 4777898099999799999999999
No 36
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=21.55 E-value=32 Score=13.09 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC-CCCHHHHHHHHCCCCHHH
Q ss_conf 110001235678999768699988054179999999984-899889999837888789
Q gi|254780882|r 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSN-GGDLRSIQSILGHFRLST 294 (328)
Q Consensus 238 ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll~~-G~~~~~v~~~lGH~s~~t 294 (328)
+|++.+.+.|++ ..|++..-....+|=..|..++.. +.++..|+..+|=+|.+.
T Consensus 31 ~s~~~l~r~fk~---~~g~s~~~yi~~~Rl~~a~~lL~~~~~si~~IA~~~Gf~~~~~ 85 (103)
T 3lsg_A 31 LSSGYLSIMFKK---NFGIPFQDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNY 85 (103)
T ss_dssp CCHHHHHHHHHH---HHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHH
T ss_pred CCHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHH
T ss_conf 299999999999---8890999999978999998898778963999999985799899
No 37
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=21.15 E-value=33 Score=13.04 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-HCCCCHHHHHHHHCCCCHHHH----HHHHHHCHHHH
Q ss_conf 1100012356789997686999880541799999999-848998899998378887897----99996198999
Q gi|254780882|r 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-SNGGDLRSIQSILGHFRLSTT----QIYTNVNSKNG 306 (328)
Q Consensus 238 ls~~~i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll-~~G~~~~~v~~~lGH~s~~tT----~~Y~h~~~~~~ 306 (328)
+|+..+.+.|++ ..|....-..+.+|=..|..+| +.+.++..|+..+|=+|.+.= ..|..+++.+.
T Consensus 39 ~S~~~l~r~fk~---~~g~s~~~~i~~~Rl~~a~~~L~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~~y 109 (129)
T 1bl0_A 39 YSKWHLQRMFKK---ETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKY 109 (129)
T ss_dssp SCHHHHHHHHHH---HHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 299999999999---86909447784379999999987679999999999689987899999999989099999
Done!