HHSEARCH alignment of GI: 254780882 and SCOP domain: d1a0pa1

Alignment
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=99.76  E-value=6.7e-19  Score=134.51  Aligned_cols=95  Identities=20%  Similarity=0.340  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999862548899999999999999999851214788789689899999999999986121013321123444
Q gi|254780882|r   16 KERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGI   95 (328)
Q Consensus        16 ~~~e~~L~~l~~~r~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~~~~~~~i~~~~i~~~l~~l~~~~~s~~T~~~~ls~l   95 (328)
                      +.+++||+++..|||+||+|+++|+.++..|..||....      .++.+++..+|..|+.++.++|++++|+++++++|
T Consensus         4 ~~ie~fl~~l~~erg~S~~Ti~aY~~dl~~f~~~l~~~~------~~~~~i~~~~i~~yl~~l~~~g~s~~Ti~r~lsal   77 (98)
T d1a0pa1           4 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG------LTLATAQSDDLQALLAERLEGGYKATSSARLLSAV   77 (98)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTS------CCTTTCCHHHHHHHHHSCC-------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC------CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             999999999998849599999999999999999887616------44111558999999999985245510599999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCC
Q ss_conf             222233321012322222222
Q gi|254780882|r   96 KSFLKYLKKRKITTESNILNM  116 (328)
Q Consensus        96 r~f~~~~~~~~~i~~np~~~i  116 (328)
                      |+||+||..+|+++.||+..|
T Consensus        78 r~ff~~l~~~~~i~~nP~~~i   98 (98)
T d1a0pa1          78 RRLFQYLYREKFREDDPSAHL   98 (98)
T ss_dssp             HHHHHHHHHTTSSSSCTTSCC
T ss_pred             HHHHHHHHHCCCCCCCCCCCC
T ss_conf             999999999789376833419


SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Recombinase XerD
species: Escherichia coli [TaxId: 562]