HHSEARCH alignment of GI: 254780882 and SCOP domain: d1a0pa1

Alignment
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=92.07  E-value=0.043  Score=29.50  Aligned_cols=40  Identities=13%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999998-6121013321123444222233321012
Q gi|254780882|r   68 YTEIRAFISKRR-TQKIGDRSLKRSLSGIKSFLKYLKKRKI  107 (328)
Q Consensus        68 ~~~i~~~l~~l~-~~~~s~~T~~~~ls~lr~f~~~~~~~~~  107 (328)
                      ...|..|+.++. ++|+|+.|+..|...|+.|++|+..++.
T Consensus         3 ~~~ie~fl~~l~~erg~S~~Ti~aY~~dl~~f~~~l~~~~~   43 (98)
T d1a0pa1           3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL   43 (98)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             89999999999988495999999999999999998876164


SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Recombinase XerD
species: Escherichia coli [TaxId: 562]