HHSEARCH alignment of GI: 254780882 and SCOP domain: d1a0pa2

Alignment
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=1.1e-33  Score=226.77  Aligned_cols=176  Identities=36%  Similarity=0.490  Sum_probs=146.1

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf             11111015678776531013567757753201222100112332222211222223323220332378531000112210
Q gi|254780882|r  127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSV  206 (328)
Q Consensus       127 ~~lt~~e~~~ll~~~~~~~~~~~~~~~~Rd~~i~~ll~~TGlR~~El~~L~~~did~~~~~i~v~gKg~K~R~Vpi~~~~  206 (328)
                      +.||.+|+.++++++..     ....++||++||.++++||||++|+++|+|+||+++.+.+.+.+|+.|.|.++.....
T Consensus         1 k~Lt~eei~~ll~~~~~-----~~~~~lRd~~l~~l~~~tG~R~~ei~~L~~~~i~~~~~~i~~~~~~~k~r~~~~~~~~   75 (182)
T d1a0pa2           1 KDLSEAQVERLLQAPLI-----DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA   75 (182)
T ss_dssp             CCCCHHHHHHHHHCSCT-----TSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEEEEECSSSCEEEEECCHHH
T ss_pred             CCCCHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEEEECCCCEEEEEEECCHH
T ss_conf             98999999999827463-----8818799999999999967764774202141411443289983689801257520013


Q ss_pred             HHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf             023432211100123-446655432111122111000123567899976869-998805417999999998489988999
Q gi|254780882|r  207 RKAILEYYDLCPFDL-NLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLP-LSTTAHTLRHSFATHLLSNGGDLRSIQ  284 (328)
Q Consensus       207 ~~~l~~yl~~~~~~~-~~~~~~~lF~~~~g~~ls~~~i~~~~~~~~~~~gi~-~~~spH~lRHtfAt~ll~~G~~~~~v~  284 (328)
                      ...+..++....... ......+++++..+.+++.+++++.++++++.+|++ .+++||+|||||||.|+++|+|+.+|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~H~~Rht~at~l~~~G~~~~~I~  155 (182)
T d1a0pa2          76 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQ  155 (182)
T ss_dssp             HHHHHHHHHHTHHHHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHCSSCGGGS
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf             35566655311230012345654210235773668999999999999849985783614146589996556499999999


Q ss_pred             HHHCCCCHHHHHHHHHHCHHHHH
Q ss_conf             98378887897999961989999
Q gi|254780882|r  285 SILGHFRLSTTQIYTNVNSKNGG  307 (328)
Q Consensus       285 ~~lGH~s~~tT~~Y~h~~~~~~~  307 (328)
                      ++|||+|++||++|+|++.++.+
T Consensus       156 ~~lGH~s~~tt~~Y~~~~~e~~r  178 (182)
T d1a0pa2         156 MLLGHSDLSTTQIYTHVATERLR  178 (182)
T ss_dssp             SCC--CCCCHHHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHCCCHHHHH
T ss_conf             99589988999987687999999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Lambda integrase-like, catalytic core
domain: Recombinase XerD
species: Escherichia coli [TaxId: 562]