HHSEARCH alignment of GI: 254780882 and SCOP domain: d1k4ta2

Alignment

Probab=95.91  E-value=0.0048  Score=35.50  Aligned_cols=101  Identities=22%  Similarity=0.197  Sum_probs=62.4

Q ss_pred             CCCCCCCCCCCC------CCCEEE--CCCCCCC--CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             221122222332------322033--2378531--000112210023432211100123446655432111122111000
Q gi|254780882|r  173 ALSLTPQNIMDD------QSTLRI--QGKGDKI--RIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGV  242 (328)
Q Consensus       173 l~~L~~~did~~------~~~i~v--~gKg~K~--R~Vpi~~~~~~~l~~yl~~~~~~~~~~~~~~lF~~~~g~~ls~~~  242 (328)
                      ++.|+.+||.+.      .+.|.+  .||.|..  ..|++.+.+...|....+.      ..+++.||     .+++...
T Consensus        74 ~tTLr~eHv~l~~~~~~~~~~i~~~F~GK~gvr~~~~v~~~~~v~~~l~~~~~~------k~~~d~LF-----~~i~s~~  142 (263)
T d1k4ta2          74 CCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMEN------KQPEDDLF-----DRLNTGI  142 (263)
T ss_dssp             GGGCBGGGEEEEEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHHTTT------CCTTSBSS-----TTCCHHH
T ss_pred             EEECCHHHEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHC------CCCCHHHC-----CCCCHHH
T ss_conf             200222115761465677855899974477638999983588999999999876------69821111-----6688899


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCCC--------------HHHHHHHHCCC
Q ss_conf             12356789997686999880541799999999-----84899--------------88999983788
Q gi|254780882|r  243 FQRYIRQLRRYLGLPLSTTAHTLRHSFATHLL-----SNGGD--------------LRSIQSILGHF  290 (328)
Q Consensus       243 i~~~~~~~~~~~gi~~~~spH~lRHtfAt~ll-----~~G~~--------------~~~v~~~lGH~  290 (328)
                      ++.+    .+.+|  ..+|+.+||--.||.++     +.+.+              ...|+-+++|.
T Consensus       143 vN~y----Lk~~~--~g~TaKdFRTw~As~~~~~~L~~~~~~~~~~~~k~~~~n~Anr~VA~lcnHq  203 (263)
T d1k4ta2         143 LNKH----LQDLM--EGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQ  203 (263)
T ss_dssp             HHHH----HHHHS--TTCCTTHHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHTTCB
T ss_pred             HHHH----HHHHC--CCCCEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999----99966--9972130213446999999998379998679999999999999999982887

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Eukaryotic DNA topoisomerase I, catalytic core
domain: Eukaryotic DNA topoisomerase I, catalytic core
species: Human (Homo sapiens) [TaxId: 9606]