>gnl|CDD|131303 TIGR02249, integrase_gron, integron integrase. Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family (pfam00589) that also includes recombinases XerC (TIGR02224) and XerD (TIGR02225), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961. Length = 315

Score = 110 bits (277), Expect = 5e-25 Identities = 86/311 (27%), Positives = 134/311 (43%), Gaps = 60/311 (19%) Query: 29 RGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT-QKIGDRS 87 R +K T ++Y ++F+ F + + TE+ AF+S K+ + Sbjct: 12 RHYAKRTEEAYLHWIKRFIRFH--------NKRHPSTMGDTEVEAFLSDLAVDGKVAAST 63 Query: 88 LKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHTSH 147 ++L+ + K + K ++ + + +K LP L ++ V +L H Sbjct: 64 QNQALNALLFLYKEILKTPLSLMERFVRAKRPRK---LPVVLTREE----VRRLLEH--- 113 Query: 148 ETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI-QGKGDKIRIVP----L 202 ++ + I LLYG G+R+ E L L Q+I D +RI QGKG K R V L Sbjct: 114 ----LEGKYRLIAKLLYGSGMRLMECLRLRIQDIDFDYGEIRIRQGKGGKDRTVTLPKEL 169 Query: 203 LPSVRK------------------------AILEYYDLCPFDLNLNIQLPLFR------- 231 +P +R+ A+ Y P + P R Sbjct: 170 IPPLREQIELARAYHEADLAEGYGGVYLPHALARKYPNAPKEWGWQYLFPSHRLSRDPES 229 Query: 232 -GIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHF 290 IR +N QR +R+ G+ T HTLRHSFATHLL +G D+R++Q +LGH Sbjct: 230 GVIRRHHINETTIQRAVRRAVERAGIEKPVTCHTLRHSFATHLLESGADIRTVQELLGHS 289 Query: 291 RLSTTQIYTNV 301 + TTQIYT+V Sbjct: 290 DVKTTQIYTHV 300

RPSBLAST alignment for GI: 254780882 and conserved domain: TIGR02249