RPSBLAST alignment for GI: 254780882 and conserved domain: pfam00589

>gnl|CDD|144254 pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324. Length = 170

 Score =  132 bits (334), Expect = 1e-31
 Identities = 65/177 (36%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186
           R L E +   L+  +          ++ R+ A++ LL   GLRISE LSL   +I  D  
Sbjct: 1   RRLTEDEVERLLAALEEP-------LNIRDRALVELLLLTGLRISELLSLRWSDIDLDNG 53

Query: 187 TLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQR 245
           T+RI Q K  K R VPL  +  +A+ E+               LF   RGKPL+     R
Sbjct: 54  TIRIPQTKTRKSRTVPLSDAALEALKEWLGDRKEAEESEF---LFVSRRGKPLSRSTVNR 110

Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVN 302
             R+  +  G+    T H LRH+FATHL  NG  LR IQ +LGH  +S T  YT+V 
Sbjct: 111 AFRRAGKRAGIEKDLTPHDLRHTFATHLAENGVPLRVIQKLLGHSSISMTMRYTHVA 167