RPSBLAST alignment for GI: 254780882 and conserved domain: cd01188

>gnl|CDD|29509 cd01188, INT_pAE1, pAE1 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal domain. This CD includes various bacterial integrases, including the predicted integrase of the deletion-prone region of plasmid pAE1 of Alcaligenes eutrophus H1.. Length = 188
 Score = 79.9 bits (197), Expect = 8e-16
 Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 17/184 (9%)

Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
           LPRAL  +    L+ +    T      +  R+ AIL LL   GLR  E  +L   +I   
Sbjct: 1   LPRALPWEDVERLLASCDRSTP-----VGRRDYAILLLLARLGLRAGEVAALRLDDIDWR 55

Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL----CPFD-LNLNIQLPLFRGIRGKPL 238
             T+R+ QGKG ++  +PL   V  A+ +Y            + L ++ P FR   G   
Sbjct: 56  TGTIRVRQGKGGRVTRLPLPAEVGAALADYLRDGRPATDSRRVFLRMRAP-FRPFAG--- 111

Query: 239 NPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
                   +R+  R  G+      AH LRHS AT LL  G  L+ I  +LGH    +T I
Sbjct: 112 -HSAVSNIVRRALRRAGISPRRGGAHLLRHSLATRLLRAGAPLKEIGDVLGHRSPDSTAI 170

Query: 298 YTNV 301
           Y  V
Sbjct: 171 YAKV 174