RPSBLAST alignment for GI: 254780882 and conserved domain: cd01188
>gnl|CDD|29509 cd01188, INT_pAE1, pAE1 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal domain. This CD includes various bacterial integrases, including the predicted integrase of the deletion-prone region of plasmid pAE1 of Alcaligenes eutrophus H1.. Length = 188
Score = 79.9 bits (197), Expect = 8e-16
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 17/184 (9%)
Query: 125 LPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDD 184
LPRAL + L+ + T + R+ AIL LL GLR E +L +I
Sbjct: 1 LPRALPWEDVERLLASCDRSTP-----VGRRDYAILLLLARLGLRAGEVAALRLDDIDWR 55
Query: 185 QSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDL----CPFD-LNLNIQLPLFRGIRGKPL 238
T+R+ QGKG ++ +PL V A+ +Y + L ++ P FR G
Sbjct: 56 TGTIRVRQGKGGRVTRLPLPAEVGAALADYLRDGRPATDSRRVFLRMRAP-FRPFAG--- 111
Query: 239 NPGVFQRYIRQLRRYLGLPLSTT-AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297
+R+ R G+ AH LRHS AT LL G L+ I +LGH +T I
Sbjct: 112 -HSAVSNIVRRALRRAGISPRRGGAHLLRHSLATRLLRAGAPLKEIGDVLGHRSPDSTAI 170
Query: 298 YTNV 301
Y V
Sbjct: 171 YAKV 174