RPSBLAST alignment for GI: 254780882 and conserved domain: cd01190
>gnl|CDD|29511 cd01190, INT_SG5, INT_SG5, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 5, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases.. Length = 260
Score = 101 bits (253), Expect = 3e-22
Identities = 71/255 (27%), Positives = 102/255 (40%), Gaps = 25/255 (9%)
Query: 62 TIRQLSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
I + I AF + R I R+ + L+ + SF +Y + I +
Sbjct: 4 EIEDIDAPLILAFLDHLENDRGNSIRTRNAR--LAALHSFFRYAAREVPEHLPTIQRVLA 61
Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
+ R L V LL W R+ A+L LY G R+SEA L
Sbjct: 62 IP-MKRFKRPLVTYLTREEVQ-ALLAAPDRRTWSGRRDRAMLLFLYNTGARVSEATGLKV 119
Query: 179 QNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
++ +D + +R+ GKG K R VPL S A+ + PLF RG+P
Sbjct: 120 DDLQLDPPAQVRLIGKGRKERTVPLWRSTAAALRAWLRERG---LHAEDEPLFVNRRGEP 176
Query: 238 LN-PGVFQRYIRQLRRYLGLPLST---------TAHTLRHSFATHLLSNGGDLRSIQSIL 287
+ GV LR++ +T + H LRH+ A HLL +G D+ I L
Sbjct: 177 MTRFGVTYL----LRKHAAKAAATAPTLATKRISPHVLRHTTAMHLLQSGVDIVVIALWL 232
Query: 288 GHFRLSTTQIYTNVN 302
GH L TT IY +
Sbjct: 233 GHASLETTNIYAEAD 247