RPSBLAST alignment for GI: 254780882 and conserved domain: cd01190

>gnl|CDD|29511 cd01190, INT_SG5, INT_SG5, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 5, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases.. Length = 260
 Score =  101 bits (253), Expect = 3e-22
 Identities = 71/255 (27%), Positives = 102/255 (40%), Gaps = 25/255 (9%)

Query: 62  TIRQLSYTEIRAF---ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRN 118
            I  +    I AF   +   R   I  R+ +  L+ + SF +Y  +        I  +  
Sbjct: 4   EIEDIDAPLILAFLDHLENDRGNSIRTRNAR--LAALHSFFRYAAREVPEHLPTIQRVLA 61

Query: 119 LKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTP 178
           +       R L        V   LL       W   R+ A+L  LY  G R+SEA  L  
Sbjct: 62  IP-MKRFKRPLVTYLTREEVQ-ALLAAPDRRTWSGRRDRAMLLFLYNTGARVSEATGLKV 119

Query: 179 QNI-MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKP 237
            ++ +D  + +R+ GKG K R VPL  S   A+  +              PLF   RG+P
Sbjct: 120 DDLQLDPPAQVRLIGKGRKERTVPLWRSTAAALRAWLRERG---LHAEDEPLFVNRRGEP 176

Query: 238 LN-PGVFQRYIRQLRRYLGLPLST---------TAHTLRHSFATHLLSNGGDLRSIQSIL 287
           +   GV       LR++     +T         + H LRH+ A HLL +G D+  I   L
Sbjct: 177 MTRFGVTYL----LRKHAAKAAATAPTLATKRISPHVLRHTTAMHLLQSGVDIVVIALWL 232

Query: 288 GHFRLSTTQIYTNVN 302
           GH  L TT IY   +
Sbjct: 233 GHASLETTNIYAEAD 247