RPSBLAST alignment for GI: 254780882 and conserved domain: cd01193

>gnl|CDD|29514 cd01193, INT_IntI, IntI (E2) integrases, site-specific tyrosine recombinases, DNA breaking-rejoining enzymes, N- and C-terminal domains. This CD includes integrases which are components of multiresistant integrons and mediate recombination between a proximal attI site and a secondary target called the attC (or 59-base element) present on various mobile gene cassettes. Integron-integrases are present in many natural occurring mobile elements, including transposons and conjugative plasmids. Vibrio, Shewanella, Xanthomonas and Pseudomonas species harbor chromosomal super-integrons. All integron-integrases carry large inserts unlike the TnpF ermF-like proteins also seen in this group.. Length = 242
 Score =  134 bits (338), Expect = 4e-32
 Identities = 78/248 (31%), Positives = 118/248 (47%), Gaps = 23/248 (9%)

Query: 64  RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
            +L   ++RAF++    +  +   +  ++LS +  F ++  KR +     I   R  +K 
Sbjct: 8   DELGEEDVRAFLTLLAVEGNVSASTQNQALSALLFFYRHTLKRDLPWLQRI---RRPRKP 64

Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
             LP  L+ ++    V  +L   +            IL LLYGCGLR+SE L L  ++I 
Sbjct: 65  RKLPVVLSPEE----VRRLLGALTGLKHR------LILSLLYGCGLRLSECLRLRVKDID 114

Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--------I 233
            D+  +R+ QGKG K R V L  ++ + +  Y+              LF           
Sbjct: 115 FDRGQIRVRQGKGGKDRYVMLPEALLELLRAYWKRARALGRERPWQWLFPSTRRSRDPVE 174

Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
           R   L+    QR +++     G+    T HTLRHSFATHLL  G D+R+IQ +LGH  L 
Sbjct: 175 RRHHLSERTLQRALKKAVEQAGIDKRVTPHTLRHSFATHLLEAGYDIRTIQELLGHSDLK 234

Query: 294 TTQIYTNV 301
           TT IYT+V
Sbjct: 235 TTMIYTHV 242