RPSBLAST alignment for GI: 254780882 and conserved domain: cd01193
>gnl|CDD|29514 cd01193, INT_IntI, IntI (E2) integrases, site-specific tyrosine recombinases, DNA breaking-rejoining enzymes, N- and C-terminal domains. This CD includes integrases which are components of multiresistant integrons and mediate recombination between a proximal attI site and a secondary target called the attC (or 59-base element) present on various mobile gene cassettes. Integron-integrases are present in many natural occurring mobile elements, including transposons and conjugative plasmids. Vibrio, Shewanella, Xanthomonas and Pseudomonas species harbor chromosomal super-integrons. All integron-integrases carry large inserts unlike the TnpF ermF-like proteins also seen in this group.. Length = 242
Score = 134 bits (338), Expect = 4e-32
Identities = 78/248 (31%), Positives = 118/248 (47%), Gaps = 23/248 (9%)
Query: 64 RQLSYTEIRAFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKS 122
+L ++RAF++ + + + ++LS + F ++ KR + I R +K
Sbjct: 8 DELGEEDVRAFLTLLAVEGNVSASTQNQALSALLFFYRHTLKRDLPWLQRI---RRPRKP 64
Query: 123 NSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIM 182
LP L+ ++ V +L + IL LLYGCGLR+SE L L ++I
Sbjct: 65 RKLPVVLSPEE----VRRLLGALTGLKHR------LILSLLYGCGLRLSECLRLRVKDID 114
Query: 183 DDQSTLRI-QGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG--------I 233
D+ +R+ QGKG K R V L ++ + + Y+ LF
Sbjct: 115 FDRGQIRVRQGKGGKDRYVMLPEALLELLRAYWKRARALGRERPWQWLFPSTRRSRDPVE 174
Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLS 293
R L+ QR +++ G+ T HTLRHSFATHLL G D+R+IQ +LGH L
Sbjct: 175 RRHHLSERTLQRALKKAVEQAGIDKRVTPHTLRHSFATHLLEAGYDIRTIQELLGHSDLK 234
Query: 294 TTQIYTNV 301
TT IYT+V
Sbjct: 235 TTMIYTHV 242