RPSBLAST alignment for GI: 254780882 and conserved domain: cd01196

>gnl|CDD|29517 cd01196, INT_VanD, VanD integrase, IntD, and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases including those similar to IntD, a putative integrase-like protein, a component of the vanD glycopeptide resistance cluster in Enterococcus faecium BM4339. Members of this CD are predominantly bacterial in origin.. Length = 263

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 8/141 (5%)

Query: 159 ILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCP 218
           +++ L   G R+SE + +  +++        I  KG KIR + +  ++R   L++     
Sbjct: 112 VVWFLAATGARVSELIHIKVEHV--QTGYADIYSKGGKIRRLYIPKNLRVEALKWLK--- 166

Query: 219 FDLNLNIQLPLFRGIRGKPLNP-GVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNG 277
            +LNL     +F    GKP+   G+ Q+      +Y   P     H+ RH FA + L+  
Sbjct: 167 -ELNL-DSGYIFLNRFGKPITARGIAQQLKNYAAKYKMNPRVVYPHSFRHLFAKNFLAKY 224

Query: 278 GDLRSIQSILGHFRLSTTQIY 298
            DL  +  ++GH  + TT+IY
Sbjct: 225 NDLALLADLMGHESIETTRIY 245