RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] (328 letters) >1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:101-290) Length = 190 Score = 107 bits (268), Expect = 2e-24 Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 7/187 (3%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 K LP+ L+E Q L+ L+ ++ R+ A+L +LY GLR+SE + LT Sbjct: 2 KLPQRLPKDLSEAQVERLLQAPLIDQ-----PLELRDKAMLEVLYATGLRVSELVGLTMS 56 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQ--LPLFRGIRGKP 237 +I Q +R+ GKG+K R+VPL + Y + L + + + Sbjct: 57 DISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM 116 Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 + R + H LRH+FATHLL++G DLR +Q +LGH LSTTQI Sbjct: 117 TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQI 176 Query: 298 YTNVNSK 304 YT+V ++ Sbjct: 177 YTHVATE 183 >1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} (A:167-356) Length = 190 Score = 95.5 bits (236), Expect = 9e-21 Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 15/199 (7%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KS L + L + + + L G R+ + + Sbjct: 5 AKSKVRRSRLTADEYLKIYQAA--------ESSPCWLRLAMELAVVTGQRVGDLCEMKWS 56 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 +I+D + G K +P + + + + + R +PL+ Sbjct: 57 DIVDGYLYVEQSKTGVK-IAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLS 115 Query: 240 PGVFQRYIRQLRRYLGLPLSTTAHTLR--HSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 G RY + R+ GL T S + L + Q +LGH + Sbjct: 116 SGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQ 175 Query: 298 YTNVNSKNGGDWMMEIYDQ 316 + + +I + Sbjct: 176 XRDDRGRE----WDKIEIK 190 >1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Bacteriophage lambda} (A:) Length = 179 Score = 90.2 bits (222), Expect = 3e-19 Identities = 21/179 (11%), Positives = 42/179 (23%), Gaps = 9/179 (5%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 L + L + + + L G R+ + + +I+D Sbjct: 2 SRLTADEYLKIYQAA--------ESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYL 53 Query: 187 TLRIQGKGDKIRIVPLLPSVRKAILEYYDLC-PFDLNLNIQLPLFRGIRGKPLNPGVFQR 245 + G KI I L I L ++ + Sbjct: 54 YVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYF 113 Query: 246 YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 + L S + L + Q +LGH + + + + Sbjct: 114 MRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQFRDDRGR 172 >1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:94-283) Length = 190 Score = 88.6 bits (218), Expect = 1e-18 Identities = 30/186 (16%), Positives = 48/186 (25%), Gaps = 12/186 (6%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQ 179 KS L + L + + L G R+ + Sbjct: 5 AKSKVRRSRLTADEYLKIYQAA--------ESSPCWLRLAXELAVVTGQRVGDLCEXKWS 56 Query: 180 NIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLN 239 +I+D + G KI I L I L L + + R +PL+ Sbjct: 57 DIVDGYLYVEQSKTGVKIAIPTALHIDALGISXKETLDKCKEILGGE-TIIASTRREPLS 115 Query: 240 PGVFQRYI--RQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 G RY + L S + L + Q +LGH + Sbjct: 116 SGTVSRYFXRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTXASQ 175 Query: 298 -YTNVN 302 + Sbjct: 176 XRDDRG 181 >1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:115-310) Length = 196 Score = 75.4 bits (183), Expect = 1e-14 Identities = 22/197 (11%), Positives = 46/197 (23%), Gaps = 26/197 (13%) Query: 127 RALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQS 186 A + + + D RN A L + Y L+I+E + ++I Sbjct: 2 LAFERTDFDQVRS----LMENSDRCQDIRNLAFLGIAYNTLLKIAEIARIRVKDISRTDG 57 Query: 187 TLRIQGK-------GDKIRIVPLLPSVRKAILEYYDLCP---------------FDLNLN 224 + L V K + + + + Sbjct: 58 GRMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAP 117 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 + + + L+ + H+ R A + G + I Sbjct: 118 SATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIM 177 Query: 285 SILGHFRLSTTQIYTNV 301 G ++ Y Sbjct: 178 QAGGWTNVNIVMNYIRN 194 >1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:1-114) Length = 114 Score = 70.8 bits (173), Expect = 2e-13 Identities = 9/115 (7%), Positives = 38/115 (33%), Gaps = 7/115 (6%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +N + + S+ T + R + + ++R ++ Sbjct: 6 KNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCK---LNNR---KWFPAEPEDVRDYLLYL 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + + +++++ L + + + ++SN +++ + A + Sbjct: 60 QARGLAVKTIQQHLGQLNMLHRRSGLPRP-SDSNAVSLVMRRIRKENVDAGERAK 113 >2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:95-144,A:243-320) Length = 128 Score = 68.3 bits (167), Expect = 1e-12 Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 4/82 (4%) Query: 238 LNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQI 297 +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q LGH + TTQI Sbjct: 50 VNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQI 109 Query: 298 YTNVNSKNGGDWMMEIYDQTHP 319 YT+V + Sbjct: 110 YTHVLD----RGASGVLSPLSR 127 Score = 49.1 bits (117), Expect = 7e-07 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 11/57 (19%) Query: 120 KKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSL 176 + LP L + L++ +D ++ + LLYG GLR+ E + L Sbjct: 3 QLERKLPVVLTRDEIRRLLEI-----------VDPKHQLPIKLLYGSGLRLMECMRL 48 >1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:1-100) Length = 100 Score = 65.7 bits (160), Expect = 8e-12 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 6/99 (6%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + L + +L L +E+ L++ TL +Y D + +L + T+ +++ Sbjct: 1 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH---HRGL---TLATAQSDDLQ 54 Query: 73 AFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111 A +++R S R LS ++ +YL + K + Sbjct: 55 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDD 93 >1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} (A:1-49,A:87-170) Length = 133 Score = 63.4 bits (154), Expect = 4e-11 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 243 FQRYIRQLRRYLGLPLST--TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTN 300 + L H LRH+FA+H + NGG++ ++ ILGH + T Y + Sbjct: 54 AYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAH 113 Query: 301 VNSK 304 Sbjct: 114 FAPS 117 >2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579} (A:) Length = 118 Score = 58.1 bits (140), Expect = 2e-09 Identities = 9/113 (7%), Positives = 41/113 (36%), Gaps = 9/113 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++W + T + + +I + + +L+ ++ +++ Sbjct: 13 ESWFNTKR--HSVGIQTAKVLKGYLNSRIIPS-------LGNIKLAKLTSLHMQNYVNSL 63 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNE 131 R + + ++++ + I++ L++ ++ T++ + K + Sbjct: 64 RDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKADKEELEHHHH 116 >2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:1-94) Length = 94 Score = 52.6 bits (126), Expect = 7e-08 Identities = 13/93 (13%), Positives = 38/93 (40%), Gaps = 10/93 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + ++ R +K T+++Y +++ F + + E+ F++ Sbjct: 7 LSVREFMQ-TRYYAKKTIEAYLHWITRYIHFHN--------KKHPSLMGDKEVEEFLTYL 57 Query: 79 RTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTE 110 Q K+ ++ +L+ + K + K ++ E Sbjct: 58 AVQGKVATKTQSLALNSLSFLYKEILKTPLSLE 90 >2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073} (A:27-117) Length = 91 Score = 51.8 bits (124), Expect = 1e-07 Identities = 8/96 (8%), Positives = 31/96 (32%), Gaps = 7/96 (7%) Query: 35 TLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSG 94 T +SYE R +I + +++L +I+ + + + ++ Sbjct: 3 TWESYETVLRLHVIPT-------LGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVV 55 Query: 95 IKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALN 130 + + ++ + ++ + + + Sbjct: 56 LHEAMSQARESGLLLQNPTEAAKPPRHPLEHHHHHH 91 >2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435} (A:) Length = 111 Score = 51.2 bits (122), Expect = 2e-07 Identities = 10/115 (8%), Positives = 35/115 (30%), Gaps = 11/115 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +WL+ + ++++ E + + + I+ + + + F+ Sbjct: 7 DDWLKQYA--NDVKVSSVRAREKAIQHAIERFN--------TKPIQTIKKHDYQRFVDDI 56 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQ 133 + + ++ KY ++ ++ KK S+ + Sbjct: 57 S-AQYSKNYVDSIVASTNMIFKYAYDTRLIKAMPSEGIKRPKKKVSVELEHHHHH 110 >2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753} (A:) Length = 108 Score = 46.5 bits (110), Expect = 4e-06 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 12/109 (11%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + +L++ E G+S L SY+ R L L ++++ ++ +I++ I++ Sbjct: 9 EKFLKSKE-ADGVSVSQLNSYKNYCRNHLSPLY--------MKSLSEILPADIQSIINET 59 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 + K +LK + + + + + +R K + Sbjct: 60 KLAK---NTLKAIRNTASQIFRLAIENRAIDFNPADYVRIPKIALEHHH 105 >2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp} (A:) Length = 121 Score = 46.1 bits (109), Expect = 7e-06 Identities = 12/115 (10%), Positives = 29/115 (25%), Gaps = 10/115 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + E + S+ ++ I IRQL + + A I + Sbjct: 13 AREWHESNKRWSEDHRSRVLRYLELYI-------FPHIGSSDIRQLKTSHLLAPIKEVD- 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNL--KKSNSLPRALNEKQ 133 +R + + ++Y + + +M + Sbjct: 65 TSGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPLEHHHH 119 >1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} (A:75-166) Length = 92 Score = 44.9 bits (106), Expect = 1e-05 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 10/92 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + L RG+ + TL +Y + L + ++ EI A ++ Sbjct: 7 DRYEKILA-SRGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGY 57 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110 + S K S + + T Sbjct: 58 I-DEGKAASAKLIRSTLSDAFREAIAEGHITT 88 >2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343} (A:) Length = 112 Score = 44.9 bits (106), Expect = 1e-05 Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 11/104 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 ++++ R L T + ++ R+F + +L+ +R ++ Sbjct: 15 ASYMKTYS--RRLEIGTFRHHKSCMRKFKEYCE--------GLQFHELTEDFLRDYLIYM 64 Query: 79 RTQK-IGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 + D + +R+LS IK ++ K+ + Sbjct: 65 KKTLCNADSTAQRNLSTIKIYVSAAIKKGYMENDPFKDFGLEHH 108 >2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage} (A:) Length = 103 Score = 44.5 bits (105), Expect = 2e-05 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 10/103 (9%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + L RG+ + TL +Y + L + ++ EI A ++ Sbjct: 8 DRYEKILA-SRGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGY 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 + S K S + + T +++ R K Sbjct: 59 I-DEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKS 100 >2kj5_A Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196} (A:) Length = 116 Score = 44.1 bits (104), Expect = 2e-05 Identities = 10/107 (9%), Positives = 21/107 (19%), Gaps = 8/107 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + E + + I + + I + Sbjct: 13 ADEYFERMIAGRWKHPNIVRSRIEKDIK-------PAIGSLKVEDVKPRHIDDVLKAVM- 64 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 ++ +L +K Y KR I + L Sbjct: 65 KRGAPSIANDTLRWLKRMFNYAIKRHIIEYNPAAAFDPGDAGGKLEH 111 >2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp} (A:) Length = 110 Score = 43.8 bits (103), Expect = 3e-05 Identities = 11/113 (9%), Positives = 37/113 (32%), Gaps = 12/113 (10%) Query: 9 IVSFELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSY 68 +++F + W + + +S+ T + YE + + ++ + Sbjct: 1 MITFADYFYQ--WYEVNK-LPHVSESTKRHYESAYKHIKDHFR--------HKLLKDIKR 49 Query: 69 TEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKK 121 TE + F+++ ++++ S I++ ++ Sbjct: 50 TEYQKFLNEYG-LTHSYETIRKLNSYIRNAFDDAIHEGYVIKNPTYKAELHAS 101 >1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:1-93) Length = 93 Score = 42.5 bits (100), Expect = 7e-05 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 10/92 (10%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + L RG+ + TL +Y + L + ++ EI A ++ Sbjct: 8 DRYEKILA-SRGIKQKTLINYXSKIKAIRRGLP--------DAPLEDITTKEIAAXLNGY 58 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTE 110 + S K S + + T Sbjct: 59 I-DEGKAASAKLIRSTLSDAFREAIAEGHITT 89 >2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum} (A:) Length = 118 Score = 41.8 bits (98), Expect = 1e-04 Identities = 11/107 (10%), Positives = 30/107 (28%), Gaps = 8/107 (7%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + S+ +S +L I + I +L ++ I K Sbjct: 17 AKSWFATKTTWSEDYQRSVWTRLETYLF-------PDIGNKDIAELDTGDLLVPIKKIE- 68 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 + R + ++Y ++K+ + ++ + Sbjct: 69 KLGYLEIAMRVKQYATAIMRYAVQQKMIRFNPAYDLEGAVQKLEHHH 115 >2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12} (A:) Length = 118 Score = 40.0 bits (93), Expect = 4e-04 Identities = 7/107 (6%), Positives = 25/107 (23%), Gaps = 10/107 (9%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 W + ++ S ++ I I+ + ++ I + Sbjct: 14 WYE--HKKQVWSVGYATELAKMFDDDIL-------PIIGGLEIQDIEPMQLLEVIRRFE- 63 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPR 127 + ++ +Y + ++ + K Sbjct: 64 DRGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKN 110 >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} (A:1-9,A:174-231,A:404-626) Length = 290 Score = 28.9 bits (64), Expect = 1.0 Identities = 8/56 (14%), Positives = 23/56 (41%) Query: 60 IQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILN 115 IQ I L Y ++ + ++++ + +S+ ++ + E+ + N Sbjct: 15 IQKIEVLDYADMASLVNQKALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAAVDN 70 >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} (A:) Length = 270 Score = 27.9 bits (62), Expect = 2.0 Identities = 8/41 (19%), Positives = 16/41 (39%) Query: 182 MDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLN 222 D + + KG K+ +V P + + DL + + Sbjct: 129 NDPFIXSQNEVKGKKVGVVGHFPHLESLLEPICDLSILEWS 169 >1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase, toxin; 2.50A {Chlamydia trachomatis} (A:) Length = 231 Score = 27.0 bits (59), Expect = 3.5 Identities = 3/30 (10%), Positives = 9/30 (30%) Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 ++ + L Q Y + ++ Sbjct: 22 LEHTFYVKWSKGELTKEQLQAYAKDYYLHI 51 >1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} (A:) Length = 175 Score = 26.8 bits (59), Expect = 4.2 Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 14/89 (15%) Query: 189 RIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIR 248 RI+ G + P LPS + E + + F+ + Sbjct: 24 RIRQNGXEWFGAPGLPSGVQPEHEXXRVXGTIFEKK--------------HAENFETFSE 69 Query: 249 QLRRYLGLPLSTTAHTLRHSFATHLLSNG 277 QL + S +R + Sbjct: 70 QLLAVPRISFSLYQDVVRTVGNAQTDQSP 98 >2fa1_A Probable transcriptional regulator PHNF; PNHF, APC5558, effector binding domain, PSI, protein structure initiative, MCSG; HET: BDF; 1.70A {Escherichia coli} (A:) Length = 160 Score = 26.6 bits (58), Expect = 4.7 Identities = 11/100 (11%), Positives = 24/100 (24%), Gaps = 17/100 (17%) Query: 91 SLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDNVLLHT----- 145 ++ F + L + S L S + AL + ++ L Sbjct: 2 HMNAQARFSQNLLDQGSHPTSEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGVA 61 Query: 146 -SHETKWI-----------DARNSAILYLLYGCGLRISEA 173 + S +L G+ + + Sbjct: 62 LCLIDHYFADLTLWPTLQRFDSGSLHDFLREQTGIALRRS 101 >1rvx_A Hemagglutinin; viral protein; HET: SIA GAL NAG; 2.20A {Influenza a virus} (A:92-265) Length = 174 Score = 26.4 bits (58), Expect = 5.0 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 12/104 (11%) Query: 17 ERQNWLQNLEIERGLSKLTL-QSYECDTRQFLIFLAFY-----TEEKITIQTIRQLSYTE 70 WL E+ S L SY + ++ L ++E+ + + Sbjct: 58 RNLLWL----TEKEGSYPKLKNSYVNKKGKEVLVLWGIHHPPNSKEQQNLYQNENAYVSV 113 Query: 71 IRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKR--KITTESN 112 + + ++R T +I +R R +G ++ L K I E+N Sbjct: 114 VTSNYNRRFTPEIAERPKVRDQAGRMNYYWTLLKPGDTIIFEAN 157 >1otv_A Coenzyme PQQ synthesis protein C; seven helix bundle, dimer, PQQ biosynthesis enzyme, biosynthetic protein; 2.10A {Klebsiella pneumoniae} (A:) Length = 259 Score = 26.3 bits (57), Expect = 5.5 Identities = 4/30 (13%), Positives = 7/30 (23%) Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYL 254 I P + Q ++ Y Sbjct: 25 IHHPYHIAMHNGDATRKQIQGWVANRFYYQ 54 >3iac_A Glucuronate isomerase; IDP02065, structural genomics, center for structural genomics of infectious diseases, csgid; 2.22A {Salmonella typhimurium} (A:28-49,A:143-237) Length = 117 Score = 25.8 bits (57), Expect = 7.2 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 19/107 (17%) Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPL------LPSVRKAILEYYDLCPFDLNLNIQ-LP 228 L+PQ I DD+ +G + + + + S LEY+ D +++I+ P Sbjct: 12 LSPQEIADDRRAFSARGIXQQXNVRXVGTTDDPIDS-----LEYHRQIAADDSIDIEVAP 66 Query: 229 LFRGIRG-KPLNPGVFQRYIRQLRRYLGLPLST-----TAHTLRHSF 269 +R + K G F Y+R+L + ++ A T R Sbjct: 67 SWRPDKVFKIELDG-FVDYLRKLEAAADVSITRFDDLRQALTRRLDH 112 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.136 0.391 Gapped Lambda K H 0.267 0.0689 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,348,841 Number of extensions: 101249 Number of successful extensions: 303 Number of sequences better than 10.0: 1 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 41 Length of query: 328 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 239 Effective length of database: 1,947,404 Effective search space: 465429556 Effective search space used: 465429556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.0 bits)