RPSBLAST alignment of GI: 254780882 and protein with PDBid: 1a0p
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1 Length = 290
Score = 123 bits (307), Expect = 8e-29
Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 17/302 (5%)
Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
L + +L L +E+ L++ TL +Y D + +L +T+ T +++A
Sbjct: 3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH---HRGLTLATA---QSDDLQAL 56
Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134
+++R S R LS ++ +YL + K + ++ + K LP+ L+E Q
Sbjct: 57 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ- 115
Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194
LL + ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG
Sbjct: 116 ----VERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 171
Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRY 253
+K R+VPL + Y + L + + + R + + F I+
Sbjct: 172 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 231
Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312
G+ + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +
Sbjct: 232 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 287
Query: 313 IY 314
++
Sbjct: 288 LH 289