RPSBLAST alignment of GI: 254780882 and protein with PDBid: 1aih

>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} SCOP: d.163.1.1 Length = 170

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 23/163 (14%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LL     ++  D     I+ +    G R SEA +   Q+ +          K  K R VP
Sbjct: 15  LLAECDNSRNPDLG--LIVRICLATGARWSEAET-LTQSQVMPYKITFTNTKSKKNRTVP 71

Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
           +   +   + +       D                             LR  + LP    
Sbjct: 72  ISDELFDMLPKKRGRLFNDAY--------------------ESFENAVLRAEIELPKGQL 111

Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
            H LRH+FA+H + NGG++  ++ ILGH  +  T  Y +    
Sbjct: 112 THVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPS 154