RPSBLAST alignment of GI: 254780882 and protein with PDBid: 2a3v

>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} Length = 320
 Score =  105 bits (261), Expect = 2e-23
 Identities = 62/320 (19%), Positives = 115/320 (35%), Gaps = 43/320 (13%)

Query: 13  ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
           + L   + ++Q     R  +K T+++Y     +++ F           +    +   E+ 
Sbjct: 4   QFLLSVREFMQ----TRYYAKKTIEAYLHWITRYIHFHN--------KKHPSLMGDKEVE 51

Query: 73  AFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-------------- 117
            F++    Q K+  ++   +L+ +    K + K  ++ E      +              
Sbjct: 52  EFLTYLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEI 111

Query: 118 -------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
                         +K        L E   L + D    + +          +  + L  
Sbjct: 112 RRLLEIVDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAK 171

Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
                + E ++L  +    D       G      +    P+       +Y    F     
Sbjct: 172 ELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYL---FPSFQL 228

Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
              P    +R   +N  V Q+ +R+  +  G+  + T HTLRHSFATHLL  G D+R++Q
Sbjct: 229 SLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQ 288

Query: 285 SILGHFRLSTTQIYTNVNSK 304
             LGH  + TTQIYT+V  +
Sbjct: 289 EQLGHTDVKTTQIYTHVLDR 308