RPSBLAST alignment of GI: 254780882 and protein with PDBid: 2a3v
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} Length = 320
Score = 105 bits (261), Expect = 2e-23
Identities = 62/320 (19%), Positives = 115/320 (35%), Gaps = 43/320 (13%)
Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72
+ L + ++Q R +K T+++Y +++ F + + E+
Sbjct: 4 QFLLSVREFMQ----TRYYAKKTIEAYLHWITRYIHFHN--------KKHPSLMGDKEVE 51
Query: 73 AFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-------------- 117
F++ Q K+ ++ +L+ + K + K ++ E +
Sbjct: 52 EFLTYLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEI 111
Query: 118 -------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164
+K L E L + D + + + + L
Sbjct: 112 RRLLEIVDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAK 171
Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224
+ E ++L + D G + P+ +Y F
Sbjct: 172 ELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYL---FPSFQL 228
Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284
P +R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q
Sbjct: 229 SLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQ 288
Query: 285 SILGHFRLSTTQIYTNVNSK 304
LGH + TTQIYT+V +
Sbjct: 289 EQLGHTDVKTTQIYTHVLDR 308