RPSBLAST alignment of GI: 254780882 and protein with PDBid: 3nkh

>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp} Length = 244

 Score = 95.3 bits (236), Expect = 2e-20
 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 28/204 (13%)

Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDD 184
           L   +  +++ ++          I  R     + +       G+RI E L++  ++I  D
Sbjct: 26  LELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFD 85

Query: 185 QSTLRIQG-------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225
             +L I G                        R + L     + + +       D   N 
Sbjct: 86  NKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWND 145

Query: 226 QLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281
                  +F   +G P+    F + +R+  + +G+    ++H LRHS  + L   G  L+
Sbjct: 146 GYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLK 205

Query: 282 SIQSILGHFRLSTT-QIYTNVNSK 304
           +I   +GH    TT  IY++V  +
Sbjct: 206 AIMDRVGHSDHRTTLSIYSHVTEQ 229