RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] (328 letters) >1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1 Length = 290 Score = 123 bits (307), Expect = 8e-29 Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 17/302 (5%) Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74 L + +L L +E+ L++ TL +Y D + +L +T+ T +++A Sbjct: 3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH---HRGLTLATA---QSDDLQAL 56 Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQA 134 +++R S R LS ++ +YL + K + ++ + K LP+ L+E Q Sbjct: 57 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ- 115 Query: 135 LTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKG 194 LL + ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG Sbjct: 116 ----VERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 171 Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGI-RGKPLNPGVFQRYIRQLRRY 253 +K R+VPL + Y + L + + + R + + F I+ Sbjct: 172 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 231 Query: 254 LGLPLST-TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMME 312 G+ + H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + + Sbjct: 232 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQ 287 Query: 313 IY 314 ++ Sbjct: 288 LH 289 >1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 2crx_A* 1ouq_A* 1nzb_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A 1pvq_A ... Length = 324 Score = 106 bits (264), Expect = 7e-24 Identities = 38/310 (12%), Positives = 91/310 (29%), Gaps = 32/310 (10%) Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77 R+N + + S+ T + R + + ++R ++ Sbjct: 5 RKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCK---LNNRKW---FPAEPEDVRDYLLY 58 Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTL 137 + + + +++++ L + + + + + + + + ++ KQAL Sbjct: 59 LQARGLAVKTIQQHLGQLNMLHRRSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQALAF 118 Query: 138 ----VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQ-- 191 D V + + D RN A L + Y L+I+E + ++I + Sbjct: 119 ERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLKIAEIARIRVKDISRTDGGRMLIHI 178 Query: 192 -----GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLP-------LFRGIRGKPLN 239 L V K + + + + N L + L+ Sbjct: 179 GRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLS 238 Query: 240 PGVFQRYIRQLRRYLG--------LPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR 291 + R + L+ + H+ R A + G + I G Sbjct: 239 TRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTN 298 Query: 292 LSTTQIYTNV 301 ++ Y Sbjct: 299 VNIVMNYIRN 308 >2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} Length = 320 Score = 105 bits (261), Expect = 2e-23 Identities = 62/320 (19%), Positives = 115/320 (35%), Gaps = 43/320 (13%) Query: 13 ELLKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIR 72 + L + ++Q R +K T+++Y +++ F + + E+ Sbjct: 4 QFLLSVREFMQ----TRYYAKKTIEAYLHWITRYIHFHN--------KKHPSLMGDKEVE 51 Query: 73 AFISKRRTQ-KIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMR-------------- 117 F++ Q K+ ++ +L+ + K + K ++ E + Sbjct: 52 EFLTYLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEI 111 Query: 118 -------------NLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNSAILYLLY 164 +K L E L + D + + + + L Sbjct: 112 RRLLEIVDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAK 171 Query: 165 GCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLN 224 + E ++L + D G + P+ +Y F Sbjct: 172 ELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYL---FPSFQL 228 Query: 225 IQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQ 284 P +R +N V Q+ +R+ + G+ + T HTLRHSFATHLL G D+R++Q Sbjct: 229 SLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQ 288 Query: 285 SILGHFRLSTTQIYTNVNSK 304 LGH + TTQIYT+V + Sbjct: 289 EQLGHTDVKTTQIYTHVLDR 308 >3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp} Length = 244 Score = 95.3 bits (236), Expect = 2e-20 Identities = 39/204 (19%), Positives = 75/204 (36%), Gaps = 28/204 (13%) Query: 129 LNEKQALTLVDNVLLHTSHETKWIDARN----SAILYLLYGCGLRISEALSLTPQNIMDD 184 L + +++ ++ I R + + G+RI E L++ ++I D Sbjct: 26 LELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFD 85 Query: 185 QSTLRIQG-------------------KGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNI 225 +L I G R + L + + + D N Sbjct: 86 NKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWND 145 Query: 226 QLP----LFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLR 281 +F +G P+ F + +R+ + +G+ ++H LRHS + L G L+ Sbjct: 146 GYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLK 205 Query: 282 SIQSILGHFRLSTT-QIYTNVNSK 304 +I +GH TT IY++V + Sbjct: 206 AIMDRVGHSDHRTTLSIYSHVTEQ 229 >1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3* Length = 356 Score = 82.6 bits (202), Expect = 1e-16 Identities = 46/289 (15%), Positives = 85/289 (29%), Gaps = 24/289 (8%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 + + L RG+ + TL +Y + L E IT + I + Sbjct: 81 DRYEKILA-SRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAA---------MLNG 130 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLV 138 + S K S + + T +++ R K R Sbjct: 131 YIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRL---------T 181 Query: 139 DNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIR 198 + L + + L G R+ + + +I+D + G K Sbjct: 182 ADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVK-I 240 Query: 199 IVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPL 258 +P + + + + + R +PL+ G RY + R+ GL Sbjct: 241 AIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSF 300 Query: 259 ST---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T H LR + L + Q +LGH + Y + + Sbjct: 301 EGDPPTFHELRS-LSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGR 348 >1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* Length = 283 Score = 79.6 bits (194), Expect = 9e-16 Identities = 50/287 (17%), Positives = 88/287 (30%), Gaps = 24/287 (8%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + + L RG+ + TL +Y + L + ++ EI A ++ Sbjct: 10 YEKILA-SRGIKQKTLINYMSKIKAIRRGLP--------DAPLEDITTKEIAAMLNGYI- 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRALNEKQALTLVDN 140 + S K S + + T +++ R K R + Sbjct: 60 DEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRL---------TAD 110 Query: 141 VLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 L + + L G R+ + + +I+D + G KI I Sbjct: 111 EYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIP 170 Query: 201 PLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLST 260 L I L L + + R +PL+ G RY + R+ GL Sbjct: 171 TALHIDALGISMKETLDKCKEILGGE-TIIASTRREPLSSGTVSRYFMRARKASGLSFEG 229 Query: 261 ---TAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 T H LR + L + Q +LGH + Y + + Sbjct: 230 DPPTFHELRS-LSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGR 275 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 63.0 bits (153), Expect = 8e-11 Identities = 74/452 (16%), Positives = 131/452 (28%), Gaps = 181/452 (40%) Query: 1 MEGNN-------LPEIVSFELLKERQNWLQN---------LEIERGLSKLTLQSYECDTR 44 +EGN+ L + L+K + ++N ++ + ++ Sbjct: 96 LEGNDIHALAAKLLQENDTTLVK-TKELIKNYITARIMAKRPFDKKSNSALFRAVG--EG 152 Query: 45 QFLIFLAF--------YTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDR--SLKRSLSG 94 + F Y EE +R L Y + + + L R+ Sbjct: 153 NAQLVAIFGGQGNTDDYFEE------LRDL-YQTYHVLV-GDLIKFSAETLSELIRTTLD 204 Query: 95 IKSF-------LKYLKKRKITTESN-------------ILNM-------RNLKKSNSLPR 127 + L++L+ T + + ++ + + L + P Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT---PG 261 Query: 128 ALNEK-QALT-----LVDNVLLHTSHETKW---IDARNSAILYLLYGCGLRISEA---LS 175 L + T LV V + + W + AI L + G+R EA S Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAET--DSWESFFVSVRKAITVLFF-IGVRCYEAYPNTS 318 Query: 176 LTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVR----KAILEYYDLCPFDLNLNIQLP--- 228 L P + D +G P+L S+ + + +Y + N LP Sbjct: 319 LPPSILEDSLE----NNEG---VPSPML-SISNLTQEQVQDYVNKT------NSHLPAGK 364 Query: 229 -----LFRGIR-----GKP-----LN---------PGVFQRYI----RQLR---RYLGLP 257 L G + G P LN G+ Q I R+L+ R+L P Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL--P 422 Query: 258 LSTTAHT-------------LRHS-------------FATHLLSNGGDLRSIQ-SILGH- 289 +++ H+ L + + T +G DLR + SI Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF---DGSDLRVLSGSISERI 479 Query: 290 FRLSTTQIYTNVNSKNGGDWMMEI---YDQTH 318 V W E + TH Sbjct: 480 VDCIIRL---PVK------W--ETTTQFKATH 500 Score = 43.0 bits (101), Expect = 1e-04 Identities = 36/224 (16%), Positives = 60/224 (26%), Gaps = 82/224 (36%) Query: 25 LEIERGLSKLTLQSYECDTRQFLIFLAFYTEEK-ITIQTI---RQLSYT----EIRAFIS 76 L I L++ +Q Y T L K + I + + L + + Sbjct: 339 LSI-SNLTQEQVQDYVNKTNSHL------PAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391 Query: 77 KRRTQKIG---DRSL----KRSLSGIKSFL--------KYLKK-------------RKIT 108 R K D+S +R L FL L Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451 Query: 109 TESNIL-----------NMRNLKKSNSLPRALNEKQALTLVDNVLLHTSHETKWIDARNS 157 + + ++R L + R +VD + KW Sbjct: 452 AKD--IQIPVYDTFDGSDLRVL-SGSISER---------IVDCI---IRLPVKWETTTQF 496 Query: 158 AILYLL-YGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIV 200 ++L +G G S LT +N G G +R++ Sbjct: 497 KATHILDFGPG-GASGLGVLTHRN---------KDGTG--VRVI 528 Score = 34.9 bits (80), Expect = 0.025 Identities = 46/259 (17%), Positives = 80/259 (30%), Gaps = 88/259 (33%) Query: 45 QFLIFLAFYTEEKITIQTIRQLSYTEI---------RAFISKRRTQKIGDRSLKRSLSGI 95 +FL +++ E + + ++ ++ I +L L Sbjct: 63 KFLGYVSSLVEPS------KVGQFDQVLNLCLTEFENCYL---EGNDI--HALAAKLLQE 111 Query: 96 KSFLKYLKKRKITT--ESNILNMRNL-KKSNS-LPRALNEKQA-LTLV----DNVLLHTS 146 K I + I+ R KKSNS L RA+ E A L + N Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT----- 166 Query: 147 HETKWIDARNSAILYLLYGCGLR-----ISEAL-SLTPQNIMDDQSTLRIQGKG-DKIRI 199 + + + R+ LY Y + +E L L ++ +G + Sbjct: 167 -DDYFEELRD---LYQTYHVLVGDLIKFSAETLSELIR----TTLDAEKVFTQGLN---- 214 Query: 200 VPLLPSVRKAILEYYDLCP---FDLNLNIQLPLFRGI----------R--GKPLNPGVFQ 244 +L LE P + L++ I PL G+ + G PG + Sbjct: 215 --IL-----EWLENPSNTPDKDYLLSIPISCPLI-GVIQLAHYVVTAKLLG--FTPGELR 264 Query: 245 RYIRQLRRYLGLPLSTTAH 263 Y++ G T H Sbjct: 265 SYLK------G----ATGH 273 Score = 28.0 bits (62), Expect = 3.2 Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 7/34 (20%) Query: 250 LRRYLGLPLSTTAHTLRHSF--ATHLLSNGGDLR 281 R PL+ + +L H T L+ Sbjct: 6 TR-----PLTLSHGSLEHVLLVPTASFFIASQLQ 34 >1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Bacteriophage lambda} SCOP: d.163.1.1 Length = 179 Score = 61.0 bits (146), Expect = 3e-10 Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 9/177 (5%) Query: 132 KQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 + LT + W+ + L G R+ + + +I+D + Sbjct: 1 RSRLTADEYLKIYQAAESSPCWL----RLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVE 56 Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 G K +P + + + + + R +PL+ G RY + Sbjct: 57 QSKTGVK-IAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMR 115 Query: 250 LRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 R+ GL S + L + Q +LGH + + + + Sbjct: 116 ARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQFRDDRGR 172 >3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui} Length = 117 Score = 48.1 bits (114), Expect = 3e-06 Identities = 15/93 (16%), Positives = 43/93 (46%), Gaps = 7/93 (7%) Query: 19 QNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKR 78 +L + + + +++S+ + F+ + E+ I +R+L+ ++ + + R Sbjct: 14 DRYLAHRQ--TDAADASIKSFRYRLKHFVEWA-----EERDITAMRELTGWKLDEYETFR 66 Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111 R + +L + +K++L+YL + + E Sbjct: 67 RGSDVSPATLNGEMQTLKNWLEYLARIDVVDED 99 >1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} SCOP: d.163.1.1 Length = 170 Score = 45.5 bits (106), Expect = 2e-05 Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 23/163 (14%) Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201 LL ++ D I+ + G R SEA + Q+ + K K R VP Sbjct: 15 LLAECDNSRNPDLG--LIVRICLATGARWSEAET-LTQSQVMPYKITFTNTKSKKNRTVP 71 Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261 + + + + D LR + LP Sbjct: 72 ISDELFDMLPKKRGRLFNDAY--------------------ESFENAVLRAEIELPKGQL 111 Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304 H LRH+FA+H + NGG++ ++ ILGH + T Y + Sbjct: 112 THVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPS 154 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.5 bits (70), Expect = 0.24 Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 52/82 (63%) Query: 131 EKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRI 190 EKQAL K + A S LY A DD + Sbjct: 18 EKQAL--------------KKLQA--SLKLY-----------A---------DDSA---- 37 Query: 191 QGKGDKIRIVPLLPSVRKAILE 212 P L ++ KA +E Sbjct: 38 ----------PAL-AI-KATME 47 >3hoa_A Thermostable carboxypeptidase 1; proline-rich loop, hydrolase; 2.10A {Thermus thermophilus HB27} PDB: 1wgz_A Length = 509 Score = 28.1 bits (62), Expect = 3.3 Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%) Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYLGL 256 L + G+ + F Y+ + +Y L Sbjct: 483 LVERVTGEAPSARPFLAYLEK--KYAAL 508 >2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} Length = 897 Score = 27.4 bits (60), Expect = 4.7 Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 10/55 (18%) Query: 52 FYTEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRK 106 F T + E++ F S + R +++++ I+ + ++ K Sbjct: 837 FSTRTR----------LEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNF 881 >2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage} Length = 103 Score = 27.1 bits (59), Expect = 5.0 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 10/100 (10%) Query: 21 WLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRRT 80 + + L RG+ + TL +Y + + + ++ EI A ++ Sbjct: 10 YEKILA-SRGIKQKTLINYMSKIKAIR--------RGLPDAPLEDITTKEIAAMLNGYI- 59 Query: 81 QKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLK 120 + S K S + + T +++ R K Sbjct: 60 DEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAK 99 >3i1m_O 30S ribosomal protein S15; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* 2qou_O* 2qow_O* 2qoy_O* 2qp0_O* 2vaz_F 2z4k_O* 2z4m_O* 2qal_O 3i1o_O 3i1q_O 3i1s_O 3i1z_O 3i21_O ... Length = 89 Score = 27.0 bits (60), Expect = 6.1 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 54 TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113 TE ++ + T + ++ + R L R +S + L YLK++ + + + Sbjct: 25 TEVQVALLTAQINHLQG---HFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQL 81 Query: 114 LNMRNLKK 121 + L++ Sbjct: 82 IERLGLRR 89 >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A Length = 260 Score = 27.0 bits (59), Expect = 6.2 Identities = 9/38 (23%), Positives = 18/38 (47%) Query: 79 RTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNM 116 +++K+ +K + K FLK +KK + +L Sbjct: 207 KSKKLDKDKIKEVVELRKEFLKKIKKMEEVDADRVLKE 244 >3l1n_A MP1P, cell WALL antigen; helix-turn-helix, protein-ligand complex; HET: PLM; 1.30A {Penicillium marneffei} Length = 194 Score = 26.8 bits (59), Expect = 6.3 Identities = 5/30 (16%), Positives = 15/30 (50%) Query: 279 DLRSIQSILGHFRLSTTQIYTNVNSKNGGD 308 D+ + + ++ + L+ + ++ GGD Sbjct: 47 DISAFKKVMQNISLAVNKFNVDIERYVGGD 76 >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} SCOP: c.67.3.1 Length = 270 Score = 26.4 bits (58), Expect = 9.1 Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 3/71 (4%) Query: 156 NSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVPLLPSVRKAILEYYD 215 N+ + +G ++ + + + + KG K+ +V P + + D Sbjct: 106 NNPQVAREHGVIFSDAKRVEDRMNDPFIM---SQNEVKGKKVGVVGHFPHLESLLEPICD 162 Query: 216 LCPFDLNLNIQ 226 L + + Sbjct: 163 LSILEWSPEEG 173 >3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of metallocarboxypeptidases, hydrolase; 2.10A {Trypanosoma cruzi} Length = 505 Score = 26.2 bits (57), Expect = 9.4 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%) Query: 229 LFRGIRGKPLNPGVFQRYIRQLRRYL 254 L R G+ LNP ++R++ + RY Sbjct: 478 LLRQATGETLNPEHYRRHLER--RYR 501 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.136 0.391 Gapped Lambda K H 0.267 0.0553 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,697,722 Number of extensions: 120851 Number of successful extensions: 419 Number of sequences better than 10.0: 1 Number of HSP's gapped: 406 Number of HSP's successfully gapped: 32 Length of query: 328 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 235 Effective length of database: 3,438,538 Effective search space: 808056430 Effective search space used: 808056430 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.1 bits)