RPSBLAST alignment of GI: 254780882 and SCOP domain: d1a0pa2

Alignment

>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]} Length = 182

 Score = 99.8 bits (247), Expect = 3e-22
 Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 6/175 (3%)

Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
           LL      + ++ R+ A+L +LY  GLR+SE + LT  +I   Q  +R+ GKG+K R+VP
Sbjct: 11  LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 70

Query: 202 LL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS- 259
           L   +V           P+ LN      LF   R + +    F   I+      G+    
Sbjct: 71  LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 130

Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
            + H LRH+FATHLL++G DLR +Q +LGH  LSTTQIYT+V ++     + +++
Sbjct: 131 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLH 181

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Lambda integrase-like, catalytic core
domain: Recombinase XerD
species: Escherichia coli [TaxId: 562]