RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780882|ref|YP_003065295.1| site-specific tyrosine
recombinase XerC [Candidatus Liberibacter asiaticus str. psy62]
(328 letters)
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli
[TaxId: 562]}
Length = 182
Score = 99.8 bits (247), Expect = 3e-22
Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 6/175 (3%)
Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
LL + ++ R+ A+L +LY GLR+SE + LT +I Q +R+ GKG+K R+VP
Sbjct: 11 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 70
Query: 202 LL-PSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLS- 259
L +V P+ LN LF R + + F I+ G+
Sbjct: 71 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 130
Query: 260 TTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIY 314
+ H LRH+FATHLL++G DLR +Q +LGH LSTTQIYT+V ++ + +++
Sbjct: 131 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER----LRQLH 181
>d1f44a2 d.163.1.1 (A:130-343) Cre recombinase {Bacteriophage P1
[TaxId: 10678]}
Length = 214
Score = 70.3 bits (170), Expect = 2e-13
Identities = 31/196 (15%), Positives = 51/196 (26%), Gaps = 26/196 (13%)
Query: 132 KQALTL----VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQST 187
KQAL D V + + D RN A L + Y LRI+E + ++I
Sbjct: 3 KQALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRIAEIARIRVKDISRTDGG 62
Query: 188 LRIQ-------GKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNP 240
+ L V K + + + + N L G
Sbjct: 63 RMLIHIGRTKTLVSTAGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPS 122
Query: 241 GVFQR---------------YIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQS 285
Q L+ + H+ R A + G + I
Sbjct: 123 ATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQ 182
Query: 286 ILGHFRLSTTQIYTNV 301
G ++ +
Sbjct: 183 AGGWTNVNIVMNFIRN 198
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli
[TaxId: 562]}
Length = 98
Score = 54.0 bits (129), Expect = 2e-08
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 15 LKERQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAF 74
L + +L L +E+ L++ TL +Y D + +L T+ +++A
Sbjct: 3 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR------GLTLATAQSDDLQAL 56
Query: 75 ISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTES 111
+++R S R LS ++ +YL + K +
Sbjct: 57 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDD 93
>d1ae9a_ d.163.1.1 (A:) Integrase (Int) {Bacteriophage lambda
[TaxId: 10710]}
Length = 179
Score = 51.8 bits (122), Expect = 7e-08
Identities = 24/177 (13%), Positives = 51/177 (28%), Gaps = 9/177 (5%)
Query: 132 KQALTL--VDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189
+ LT + W+ + L G R+ + + +I+D +
Sbjct: 1 RSRLTADEYLKIYQAAESSPCWL----RLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVE 56
Query: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249
+P + + + + + R +PL+ G RY +
Sbjct: 57 QSKT-GVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMR 115
Query: 250 LRRYLGL--PLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSK 304
R+ GL S + L + Q +LGH + + + +
Sbjct: 116 ARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQFRDDRGR 172
>d1aiha_ d.163.1.1 (A:) Integrase {Bacteriophage HP1 [TaxId: 10690]}
Length = 170
Score = 46.3 bits (108), Expect = 4e-06
Identities = 37/178 (20%), Positives = 60/178 (33%), Gaps = 28/178 (15%)
Query: 142 LLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLRIQGKGDKIRIVP 201
LL ++ D I+ + G R SE Q+ + K K R VP
Sbjct: 15 LLAECDNSRNPDLG--LIVRICLATGARWSE-AETLTQSQVMPYKITFTNTKSKKNRTVP 71
Query: 202 LLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQLRRYLGLPLSTT 261
+ + + + D LR + LP
Sbjct: 72 ISDELFDMLPKKRGRLFNDAY--------------------ESFENAVLRAEIELPKGQL 111
Query: 262 AHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
H LRH+FA+H + NGG++ ++ ILGH + T Y + +E + +P
Sbjct: 112 THVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPS-----HLESAVKFNP 164
>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1
[TaxId: 10678]}
Length = 110
Score = 39.1 bits (90), Expect = 5e-04
Identities = 12/107 (11%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 18 RQNWLQNLEIERGLSKLTLQSYECDTRQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISK 77
R+N + + S+ T + R + + + + ++R ++
Sbjct: 5 RKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAE------PEDVRDYLLY 58
Query: 78 RRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI-LNMRNLKKSN 123
+ + + +++++ L + + + + + + L MR ++K N
Sbjct: 59 LQARGLAVKTIQQHLGQLNMLHRRSGLPRPSDSNAVSLVMRRIRKEN 105
>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain
{Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Length = 432
Score = 28.2 bits (61), Expect = 0.89
Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Query: 234 RGKPLNPGVFQRYIRQLRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFR-- 291
G N Y ++ + + + GGDL I LG+ +
Sbjct: 23 NGDSSNDVQTGSYTYNGTPTEKKAWGSSVYADPGYDNSLVF-FGGDLAGIDQKLGYIKKT 81
Query: 292 LSTTQIYTNVNSKNGGDWMMEIYDQTHP 319
L +Y N K + + D
Sbjct: 82 LGANILYLNPIFKAPTNHKYDTQDYMAV 109
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli
[TaxId: 562]}
Length = 88
Score = 27.0 bits (60), Expect = 2.4
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 54 TEEKITIQTIRQLSYTEIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNI 113
TE ++ + T + ++ + R L R +S + L YLK++ + + +
Sbjct: 24 TEVQVALLTAQINHLQG---HFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTRL 80
Query: 114 LNMRNLKK 121
+ L++
Sbjct: 81 IERLGLRR 88
>d1hl9a1 b.71.1.3 (A:357-448) Putative alpha-L-fucosidase
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 92
Score = 26.6 bits (58), Expect = 3.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 44 RQFLIFLAFYTEEKITIQTIRQLSYTEIRAFISKRR 79
R F+IFL T EKI I+ + LS +R F++ R
Sbjct: 26 RIFVIFLGIPTGEKIVIEDL-NLSAGTVRHFLTGER 60
>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora
[TaxId: 554]}
Length = 271
Score = 26.3 bits (57), Expect = 3.9
Identities = 7/76 (9%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 195 DKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRG---IRGKPLNPGVFQRYIRQLR 251
+ ++ P++ S A +++ D L + +G ++ ++ F+
Sbjct: 2 EIVKFNPVMASGFGAYIDHRDFLEAKTETIKNLLMRQGFVVVKNLDIDSDTFRDIYSAYG 61
Query: 252 RYLGLPLSTTAHTLRH 267
+ +
Sbjct: 62 TIVEYADEKIGVGFGY 77
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 25.9 bits (56), Expect = 4.5
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 8 EIVSFELLKERQNWLQNLEIERGLSKLTLQSYE 40
+ +F +E + L + L K+ + Y
Sbjct: 262 RLTNFTE-EEAIEECKKLNTKSMLPKIIVTGYN 293
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 206
Score = 25.9 bits (56), Expect = 4.9
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 203 LPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPG 241
+ KA+ + D F L ++ G+ + G
Sbjct: 151 ASTEAKALAAHRDPKGFPLADARRVAGLTGVY--QVPAG 187
>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028)
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 25.2 bits (55), Expect = 7.8
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 228 PLFRGIRGKP--LNPGVFQRYIRQLRRYL 254
L I+ P L+ F+ +++Q ++
Sbjct: 4 GLLEEIKALPLRLDEERFRFWLQQDYPFV 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,172,711
Number of extensions: 53566
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 22
Length of query: 328
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,226,816
Effective search space: 296889472
Effective search space used: 296889472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)