Query gi|254780883|ref|YP_003065296.1| hypothetical protein CLIBASIA_03900 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 139
No_of_seqs 116 out of 1800
Neff 3.5
Searched_HMMs 39220
Date Mon May 30 03:16:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780883.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00041 hypothetical protein; 100.0 6.4E-34 1.6E-38 220.5 9.4 84 48-131 1-84 (95)
2 COG0759 Uncharacterized conser 100.0 7.6E-33 1.9E-37 214.2 9.3 76 54-129 5-80 (92)
3 pfam01809 DUF37 Domain of unkn 100.0 1.2E-30 3E-35 201.2 8.4 67 56-122 2-68 (68)
4 TIGR00278 TIGR00278 conserved 100.0 2.9E-30 7.3E-35 199.0 6.0 69 59-127 1-69 (75)
5 TIGR00107 deoD purine nucleosi 59.7 1.9 4.8E-05 23.1 -0.7 31 81-116 63-93 (234)
6 COG0334 GdhA Glutamate dehydro 40.1 31 0.00079 16.0 3.1 53 66-126 58-112 (411)
7 COG0813 DeoD Purine-nucleoside 32.4 27 0.00069 16.3 1.7 34 78-116 64-97 (236)
8 pfam04805 Pox_E10 E10-like pro 30.5 20 0.00051 17.1 0.8 17 82-98 19-35 (70)
9 pfam05514 HR_lesion HR-like le 20.2 70 0.0018 13.9 2.8 47 47-93 75-121 (138)
10 COG0678 AHP1 Peroxiredoxin [Po 18.8 33 0.00083 15.9 -0.0 16 73-88 42-57 (165)
No 1
>PRK00041 hypothetical protein; Validated
Probab=100.00 E-value=6.4e-34 Score=220.52 Aligned_cols=84 Identities=49% Similarity=0.926 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 71455489999999999999850778788889867828999999995088899999998740688987898689998888
Q gi|254780883|r 48 GKFPKTLGRLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDPVPDDLP 127 (139)
Q Consensus 48 ~~~~~~l~r~i~i~LI~lYQ~~iSP~lg~~CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~~gG~DPVP~~~p 127 (139)
+.+.+...+.++|++|++||++|||++|++|||+|||||||+|||++||+++|++|+++||+|||||+.||+||||++.+
T Consensus 1 ~~~~~~pmk~~~i~lI~~Yq~~iSp~~g~~CRf~PTCS~Ya~~Ai~~~G~~kG~~l~~~Ri~RC~P~~~gG~DPVP~~~~ 80 (95)
T PRK00041 1 MAWRKRPMKRLLIALIRFYQRTISPLLGPSCRFYPTCSEYAIEAIARHGLWKGSWLTLKRILRCHPFHPGGFDPVPPKPS 80 (95)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 97304069999999999999680887799987884579999999998383887999863641378999999498989876
Q ss_pred CCCC
Q ss_conf 6557
Q gi|254780883|r 128 PKKN 131 (139)
Q Consensus 128 ~kkn 131 (139)
.+.+
T Consensus 81 ~~~~ 84 (95)
T PRK00041 81 DARN 84 (95)
T ss_pred CCCC
T ss_conf 6679
No 2
>COG0759 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.6e-33 Score=214.16 Aligned_cols=76 Identities=45% Similarity=0.887 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999999999999985077878888986782899999999508889999999874068898789868999888865
Q gi|254780883|r 54 LGRLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDPVPDDLPPK 129 (139)
Q Consensus 54 l~r~i~i~LI~lYQ~~iSP~lg~~CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~~gG~DPVP~~~p~k 129 (139)
+...+.|.+|++||++|||++|++|||+|||||||+|||++||+++|+||+++||+|||||+.||+||||+..+..
T Consensus 5 ~~~~~li~~Ir~YQ~~iSpl~~~~CRf~PTCS~Ya~eAi~~hG~lkG~~l~~~RIlrC~Pf~~GG~DpvP~~~~~~ 80 (92)
T COG0759 5 LMKKLLIFLIRFYQRFISPLLPPSCRFYPTCSEYAIEALKKHGLLKGLWLTLKRILRCHPFHKGGYDPVPERLSLR 80 (92)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 2569999999999998487789887115657899999999946199999999999806898878879898533431
No 3
>pfam01809 DUF37 Domain of unknown function DUF37. This domain is found in short (70 amino acid) hypothetical proteins from various bacteria. The domain contains three conserved cysteine residues. A member from Aeromonas hydrophila has been found to have hemolytic activity (unpublished).
Probab=99.97 E-value=1.2e-30 Score=201.22 Aligned_cols=67 Identities=49% Similarity=1.025 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9999999999998507787888898678289999999950888999999987406889878986899
Q gi|254780883|r 56 RLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDPV 122 (139)
Q Consensus 56 r~i~i~LI~lYQ~~iSP~lg~~CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~~gG~DPV 122 (139)
+.+.|++|++||++|||++|++|||+||||+||+|||++||+++|++|+++||+|||||++||+|||
T Consensus 2 ~~~~i~lI~~Yq~~iSp~~~~~Crf~PtCS~Ya~~ai~~~G~~kG~~l~~~Ri~rC~P~~~gG~DpV 68 (68)
T pfam01809 2 KRLLIGLIRFYQRFISPLLGPSCRFYPTCSEYAIEAIERHGALKGGWLALKRILRCHPFHPGGYDPV 68 (68)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 7999999999996808878999988867899999999981939999999999984789998899989
No 4
>TIGR00278 TIGR00278 conserved hypothetical protein TIGR00278; InterPro: IPR002696 This is a family of short (70 amino acid) hypothetical proteins from various bacteria. They contain three conserved cysteine residues. Q44066 from SWISSPROT from Aeromonas hydrophila has been found to have hemolytic activity..
Probab=99.96 E-value=2.9e-30 Score=198.97 Aligned_cols=69 Identities=46% Similarity=0.971 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999850778788889867828999999995088899999998740688987898689998888
Q gi|254780883|r 59 GIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDPVPDDLP 127 (139)
Q Consensus 59 ~i~LI~lYQ~~iSP~lg~~CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~~gG~DPVP~~~p 127 (139)
+|.+||+||.+|||++|++|||+||||+||+||++.||+|+|+||+++||+||||++.||+||||++.+
T Consensus 1 li~lIr~Yq~~~S~~~p~~CrF~PTCS~Y~ie~l~~~~~L~g~~l~~~RIL~C~Pl~~GG~d~~P~~~~ 69 (75)
T TIGR00278 1 LIALIRLYQIFISPLFPPSCRFYPTCSQYAIEALKTHGVLKGGWLTLKRILRCHPLHPGGIDPVPKKKQ 69 (75)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 911347789987540588874437845588999987160247899999987406788867888768767
No 5
>TIGR00107 deoD purine nucleoside phosphorylase; InterPro: IPR004402 Purine nucleoside phosphorylase 2.4.2.1 from EC also called inosine phosphorylase (pnp) cleave guanosine or inosine to respective bases and sugar-1-phosphate molecules. These enzymes are involved in the salvage of nucleotides and nucleosides.; GO: 0004731 purine-nucleoside phosphorylase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=59.66 E-value=1.9 Score=23.13 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 678289999999950888999999987406889878
Q gi|254780883|r 81 LPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGS 116 (139)
Q Consensus 81 ~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~~ 116 (139)
.||||=|+.|-|+.|++ -.+.||..|.-...
T Consensus 63 IPSi~IY~~ELi~~Y~V-----~~iiRiGSCGA~~~ 93 (234)
T TIGR00107 63 IPSISIYVKELIKFYEV-----KTIIRIGSCGAIRP 93 (234)
T ss_pred CCCHHHHHHHHHHHCCC-----CEEEEEECCCCCCC
T ss_conf 55356657753200374-----45788621301135
No 6
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=40.10 E-value=31 Score=15.98 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=37.1
Q ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCC
Q ss_conf 99850778788889867828999999995088899999998740688987--89868999888
Q gi|254780883|r 66 YQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG--SDGFDPVPDDL 126 (139)
Q Consensus 66 YQ~~iSP~lg~~CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~--~gG~DPVP~~~ 126 (139)
+.-.+-|..| -|||+|+-+.=... +.+.||+++--+-=-|++ +||++--|...
T Consensus 58 hn~a~GP~kG-GvRfhP~v~~~ev~-------~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~ 112 (411)
T COG0334 58 HNSALGPYKG-GVRFHPYVTLEEVK-------ALSFWMTLKNALAGLPYGGGKGGIIVDPKGL 112 (411)
T ss_pred ECCCCCCCCC-CEECCCCCCHHHHH-------HHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
T ss_conf 4587687557-35328878899999-------9999999999981899888752266786548
No 7
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=32.44 E-value=27 Score=16.34 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 898678289999999950888999999987406889878
Q gi|254780883|r 78 CRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGS 116 (139)
Q Consensus 78 CRf~PSCS~Ya~eAi~~~G~~kG~~Lt~~RLlRCnP~~~ 116 (139)
=.=.||||.|+.|-+..||. ..+.|+..|..+..
T Consensus 64 GmGipS~sIY~~ELi~~y~V-----k~iIRvGt~Gal~~ 97 (236)
T COG0813 64 GMGIPSISIYSRELITDYGV-----KKIIRVGTCGALSE 97 (236)
T ss_pred CCCCCCHHHHHHHHHHHHCC-----CEEEEEECCCCCCC
T ss_conf 48875089999999987385-----34899873434567
No 8
>pfam04805 Pox_E10 E10-like protein conserved region. Family of poxvirus proteins.
Probab=30.50 E-value=20 Score=17.08 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHCCHH
Q ss_conf 78289999999950888
Q gi|254780883|r 82 PTCSEYGYEAIARYGLW 98 (139)
Q Consensus 82 PSCS~Ya~eAi~~~G~~ 98 (139)
|+|.+.|++||+++++.
T Consensus 19 ~~Cr~HA~~ai~kNNiM 35 (70)
T pfam04805 19 PTCREHAKEAIQKNNIM 35 (70)
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 89999999987764766
No 9
>pfam05514 HR_lesion HR-like lesion-inducing. Family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens.
Probab=20.24 E-value=70 Score=13.90 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 47145548999999999999985077878888986782899999999
Q gi|254780883|r 47 NGKFPKTLGRLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIA 93 (139)
Q Consensus 47 ~~~~~~~l~r~i~i~LI~lYQ~~iSP~lg~~CRf~PSCS~Ya~eAi~ 93 (139)
-|++.=..|..+|-.+.-+||..++|++-+=-+|.+.-++|..+-++
T Consensus 75 lGglLFi~Gss~GA~lLLl~~~~~Tpil~dFyny~~d~~~f~~~~~~ 121 (138)
T pfam05514 75 LGGLLFIFGSSFGAYLLLLYQAIATPILYDFYNYDLDKSEFVQLLLK 121 (138)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 66688676453789999999998576643353157773279899999
No 10
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=18.85 E-value=33 Score=15.86 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCHHHHH
Q ss_conf 8788889867828999
Q gi|254780883|r 73 VFGNSCRYLPTCSEYG 88 (139)
Q Consensus 73 ~lg~~CRf~PSCS~Ya 88 (139)
+++--=-|.||||.+-
T Consensus 42 lf~lPGAFTPTCS~~h 57 (165)
T COG0678 42 LFSLPGAFTPTCSSSH 57 (165)
T ss_pred EEECCCCCCCCCCCCC
T ss_conf 9948876588766022
Done!