RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780883|ref|YP_003065296.1| hypothetical protein
CLIBASIA_03900 [Candidatus Liberibacter asiaticus str. psy62]
(139 letters)
>gnl|CDD|178815 PRK00041, PRK00041, hypothetical protein; Validated.
Length = 93
Score = 126 bits (318), Expect = 2e-30
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 48 GKFPKTLGRLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLR 107
+ K + + I +IR YQ S + G SCR+ PTCSEY EAIAR+GLW GSWLTL R
Sbjct: 1 MAWRKRPMKRLLIALIRFYQRFISPLLGPSCRFYPTCSEYAIEAIARHGLWKGSWLTLKR 60
Query: 108 LIKCNPLGSDGFDPVPD 124
+++C+P GFDPVPD
Sbjct: 61 ILRCHPFHPGGFDPVPD 77
>gnl|CDD|161800 TIGR00278, TIGR00278, conserved hypothetical protein YidD. This
model describes a family of small proteins of unknown
function restricted to and broadly but not universally
distributed among the Bacteria. Members frequently are
found in the vicinity of rnpA, the gene for the protein
subunit of ribonuclease P. A related protein is found in
the temperature phage HP1 of Haemophilus influenzae.
Annotation of some members of this family as hemolysins
appears to represent propagation from an unpublished
GenBank submission, L36462, attributed to Aeromonas
hydrophila but a close match to E. coli.
Length = 75
Score = 86.4 bits (214), Expect = 2e-18
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119
I +IR YQ+ S F SCR+ PTCS+Y EA+ +G G WLTL R+++C+PL G
Sbjct: 2 IALIRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGN 61
Query: 120 DPVPDDLPPKKNNPKLL 136
DPV P KK + L
Sbjct: 62 DPV----PKKKQILESL 74
>gnl|CDD|172866 PRK14390, PRK14390, hypothetical protein; Provisional.
Length = 63
Score = 78.5 bits (193), Expect = 5e-16
Identities = 37/63 (58%), Positives = 44/63 (69%)
Query: 62 IIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDP 121
+I YQ FS FG CR++P+CS YGYEAI R+G W G WLTL RL +C+PL G DP
Sbjct: 1 MISFYQKWFSPFFGPRCRFIPSCSSYGYEAITRHGPWKGGWLTLRRLSRCHPLTPCGCDP 60
Query: 122 VPD 124
VPD
Sbjct: 61 VPD 63
>gnl|CDD|172862 PRK14386, PRK14386, hypothetical protein; Provisional.
Length = 106
Score = 75.1 bits (184), Expect = 6e-15
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 62 IIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDP 121
IR+YQ+ S + G CRY+PTCS+Y EA+ +G G WL+ R+ +C+P G G+DP
Sbjct: 8 FIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDP 67
Query: 122 VP 123
VP
Sbjct: 68 VP 69
>gnl|CDD|184656 PRK14389, PRK14389, hypothetical protein; Provisional.
Length = 98
Score = 73.4 bits (180), Expect = 2e-14
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119
+ ++R Y+L+ S G++CR+ PTCS Y +A+ ++G GS+LTL RL +C+P G
Sbjct: 7 MALVRGYRLLLSPWLGSACRFEPTCSAYSLQALEQHGAAAGSYLTLRRLARCHPWCDGGH 66
Query: 120 DPVPDDLP 127
DPVP + P
Sbjct: 67 DPVPQEKP 74
>gnl|CDD|172864 PRK14388, PRK14388, hypothetical protein; Provisional.
Length = 82
Score = 73.0 bits (179), Expect = 3e-14
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 62 IIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDP 121
++R YQ S + GN+CR+ PTCSEY EAI+ +G G W T R+IKC P G+D
Sbjct: 8 LLRFYQYFISPLLGNNCRFHPTCSEYAKEAISMHGSIKGLWFTFKRIIKCQPFCDGGYDT 67
Query: 122 VPDDLPPKKNNPKLLSKK 139
VP + N K L+KK
Sbjct: 68 VPISI----KNSKPLNKK 81
>gnl|CDD|172847 PRK14371, PRK14371, hypothetical protein; Provisional.
Length = 81
Score = 72.7 bits (178), Expect = 3e-14
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 56 RLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG 115
R + + I+ Y+ S + + CR+ P+CS Y YEAI +GL G WL++ RL +C+P
Sbjct: 2 RKLALVPIQFYRYAISPLMASHCRFYPSCSCYAYEAIENHGLLRGGWLSVRRLGRCHPWN 61
Query: 116 SDGFDPVP 123
G+DPVP
Sbjct: 62 PGGYDPVP 69
>gnl|CDD|184651 PRK14370, PRK14370, hypothetical protein; Provisional.
Length = 120
Score = 72.2 bits (177), Expect = 4e-14
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 52 KTLGRLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKC 111
K L +L+ + I YQ I S + CRY PTCS YG +AIA +G+ GS L L R+ +C
Sbjct: 7 KYLYKLL-LAFIHFYQRIISPILPARCRYYPTCSNYGKQAIAWHGVGKGSLLLLKRIGRC 65
Query: 112 NPLGSDGFDPVP 123
+PLG G D VP
Sbjct: 66 HPLGGHGIDFVP 77
>gnl|CDD|184655 PRK14387, PRK14387, hypothetical protein; Provisional.
Length = 84
Score = 72.3 bits (177), Expect = 4e-14
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 61 GIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFD 120
+R Y+L S + G CR+ P+CSEY A+ +G GSWL L R+ +CNP G G+D
Sbjct: 10 LGLRAYKLTLSPLIGRQCRFTPSCSEYTAAALKDHGPLKGSWLGLRRICRCNPFGGSGYD 69
Query: 121 PVPDDLPPKK 130
P P P+K
Sbjct: 70 PPPPRHQPRK 79
>gnl|CDD|172859 PRK14383, PRK14383, hypothetical protein; Provisional.
Length = 84
Score = 70.4 bits (172), Expect = 1e-13
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 62 IIRIYQLIFS-NVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFD 120
+R YQ + S +CR+ PTCS+Y EAI R+G G WL L R+++CNPL GFD
Sbjct: 11 AVRWYQRVLSPRKPAPTCRFSPTCSQYAVEAIERHGALKGGWLALWRVLRCNPLVPGGFD 70
Query: 121 PVPDDLPPKKNNP 133
PVP+ P ++
Sbjct: 71 PVPEHFPARRPRH 83
>gnl|CDD|172854 PRK14378, PRK14378, hypothetical protein; Provisional.
Length = 103
Score = 69.2 bits (169), Expect = 3e-13
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 56 RLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG 115
R I +IR+Y+ + S +G+ CRY P+CS YG EA+ +GL G +L + R+ +C+P
Sbjct: 13 RNAAIAVIRLYRRVVSPFYGDVCRYYPSCSAYGLEAVQEHGLIFGGYLAVWRVCRCHPWA 72
Query: 116 SDGFDPVP 123
G D VP
Sbjct: 73 EGGIDDVP 80
>gnl|CDD|184653 PRK14379, PRK14379, hypothetical protein; Provisional.
Length = 95
Score = 69.1 bits (169), Expect = 3e-13
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 56 RLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG 115
R I I ++R+YQ S + SCRY PTCS Y +A+ ++G +G + L R+++CNP
Sbjct: 2 RKILIFLVRVYQKFISPILPPSCRYYPTCSSYMIDALKKHGPILGLIMGLARILRCNPFI 61
Query: 116 SDGFDPVPDDLPPKKN 131
G DPVPD ++N
Sbjct: 62 RGGVDPVPDYFTLRRN 77
>gnl|CDD|172849 PRK14373, PRK14373, hypothetical protein; Provisional.
Length = 73
Score = 68.1 bits (166), Expect = 7e-13
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119
+G+IR YQ S + CRY PTCS+Y EA+ +YG + G L + R+ +C+P G G
Sbjct: 10 LGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKKYGAFKGGRLAIKRIARCHPFGGHGH 69
Query: 120 DPVP 123
DPVP
Sbjct: 70 DPVP 73
>gnl|CDD|172852 PRK14376, PRK14376, hypothetical protein; Provisional.
Length = 176
Score = 64.2 bits (156), Expect = 1e-11
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 61 GIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFD 120
G++R+Y+ +S CR+ P+CS Y A+ R+G G L + RL++C PL + G+D
Sbjct: 47 GLVRLYRAGWSGRNAGCCRFEPSCSAYALTAVRRHGGVRGGLLAVRRLLRCQPLSAGGYD 106
Query: 121 PVPDDLPPKKNNPKLLSK 138
PVP + P P + K
Sbjct: 107 PVPGEAPGTSVGPGTVRK 124
>gnl|CDD|184650 PRK14369, PRK14369, hypothetical protein; Provisional.
Length = 119
Score = 63.5 bits (154), Expect = 2e-11
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119
+ +I++YQ S + G C+Y P+CS YGY AI R+G G+ LT R+++CNP G
Sbjct: 6 LALIKLYQWTISPLLGPVCKYYPSCSHYGYTAIDRHGAIKGTALTAWRILRCNPWSLGGV 65
Query: 120 DPVPDDLPPK 129
D VP P+
Sbjct: 66 DHVPPRKRPR 75
>gnl|CDD|172857 PRK14381, PRK14381, hypothetical protein; Provisional.
Length = 103
Score = 63.0 bits (153), Expect = 3e-11
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 49 KFPKTLGRLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRL 108
+F + L I +G+I +Y+ S + G+ CR+ P+CS+Y +A+ +G +G WLT+ R+
Sbjct: 5 RFLQNLPVRICLGLIHLYRWTISPLLGSPCRFFPSCSQYALQALKHHGCIMGLWLTIKRI 64
Query: 109 IKCNPLGSDGFDPVP 123
KC P G D VP
Sbjct: 65 GKCGPWHPGGIDLVP 79
>gnl|CDD|184654 PRK14380, PRK14380, hypothetical protein; Provisional.
Length = 81
Score = 61.9 bits (150), Expect = 5e-11
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 63 IRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDPV 122
I++YQ S + CRY P+CSEY AI YG+ G + L RL +C+P G+DP+
Sbjct: 16 IKMYQYFISPLITPCCRYYPSCSEYADSAIKHYGVIKGLLMALNRLSRCHPWSKGGYDPL 75
Query: 123 PDDLPPKKN 131
P KN
Sbjct: 76 ---FPNDKN 81
>gnl|CDD|172848 PRK14372, PRK14372, hypothetical protein; Provisional.
Length = 97
Score = 61.9 bits (150), Expect = 6e-11
Identities = 28/64 (43%), Positives = 35/64 (54%)
Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119
I IR YQ S C+Y P+CS Y EAI R+G + G L +LRL++C P G
Sbjct: 2 IRGIRWYQQRISANTPPCCKYYPSCSNYAIEAIERFGAFKGGVLAVLRLLRCRPWSRGGI 61
Query: 120 DPVP 123
D VP
Sbjct: 62 DDVP 65
>gnl|CDD|172858 PRK14382, PRK14382, hypothetical protein; Provisional.
Length = 68
Score = 58.6 bits (142), Expect = 6e-10
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119
I I+ YQ S ++ +SCR+ PTCS Y +I +YG GS R+++CNP G
Sbjct: 6 IKFIKFYQKFISPLYPSSCRFYPTCSTYAILSIEKYGALKGSLKAFWRILRCNPFSKGGV 65
Query: 120 D 120
D
Sbjct: 66 D 66
>gnl|CDD|172867 PRK14391, PRK14391, hypothetical protein; Provisional.
Length = 84
Score = 57.0 bits (137), Expect = 2e-09
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119
I +I++Y+ I S + +CR+ PTCSEY +A G + L+ R+++CNPL S GF
Sbjct: 6 IQLIQLYKKIISPLLPPACRFTPTCSEYAAQAFQECGFFQAIQLSAWRILRCNPL-SQGF 64
Query: 120 DPVPDDLPPKKNNPKL 135
D D LPP L
Sbjct: 65 D---DPLPPNTKGTNL 77
>gnl|CDD|172861 PRK14385, PRK14385, hypothetical protein; Provisional.
Length = 96
Score = 56.4 bits (136), Expect = 3e-09
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 57 LIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGS 116
LI I +I+IYQ S + G C Y P+CS Y E + +Y + L LR+I+CN L
Sbjct: 12 LILILLIKIYQNTLSKIVGFQCIYKPSCSNYALECLKKYNILTALILITLRIIRCNALFK 71
Query: 117 DGFDPVPDDLP 127
G + +P P
Sbjct: 72 GGNESLPTKKP 82
>gnl|CDD|172851 PRK14375, PRK14375, hypothetical protein; Provisional.
Length = 70
Score = 55.0 bits (132), Expect = 6e-09
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 62 IIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGS-DGFD 120
+I +Y+ S CRY PTCSEY EA+ +G+ G +LT RL++C+PL D +D
Sbjct: 2 LINLYRYCISPFIPARCRYYPTCSEYALEALKTHGILKGLYLTTRRLLRCHPLSKRDYYD 61
Query: 121 PVP 123
VP
Sbjct: 62 LVP 64
>gnl|CDD|172860 PRK14384, PRK14384, hypothetical protein; Provisional.
Length = 56
Score = 50.4 bits (120), Expect = 1e-07
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 76 NSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDPVPD 124
+SCR+ P+CS Y A+ R+G+ GS LT+ RL++C+P G D VP+
Sbjct: 2 SSCRFYPSCSCYAETALKRFGVIKGSGLTVWRLLRCHPFHPGGVDFVPE 50
>gnl|CDD|172853 PRK14377, PRK14377, hypothetical protein; Provisional.
Length = 104
Score = 49.4 bits (117), Expect = 3e-07
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 61 GIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFD 120
G++ +Y+ S G CR+ PTCSEY A+ ++ L +L RL+KC P G D
Sbjct: 12 GLVHLYRWAISPFLGAPCRFFPTCSEYALVALKKHPLRKSLFLIAKRLLKCGPWCIGGID 71
Query: 121 PVP 123
VP
Sbjct: 72 LVP 74
>gnl|CDD|184652 PRK14374, PRK14374, hypothetical protein; Provisional.
Length = 118
Score = 36.6 bits (84), Expect = 0.002
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 58 IGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSD 117
I IR YQ FS +SCR+ PTCS Y + +R++ CNP S
Sbjct: 12 IFTASIRGYQRFFSAFTFSSCRFYPTCSNYALWLLCFENPLSAMGKIAIRILSCNPFCSG 71
Query: 118 G 118
G
Sbjct: 72 G 72
>gnl|CDD|180778 PRK06959, PRK06959, putative threonine-phosphate decarboxylase;
Provisional.
Length = 339
Score = 28.1 bits (63), Expect = 0.82
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 90 EAIARYGLWIGSWLTLLRLIKCNPLGSDGFDPVPDDLPP 128
EA RYG+ +WL L I NP G PVP +P
Sbjct: 14 EAARRYGIPYDAWLDLSTGI--NPHGY----PVP-PVPA 45
>gnl|CDD|161730 TIGR00143, hypF, [NiFe] hydrogenase maturation protein HypF. A
previously described regulatory effect of HypF
mutatation is attributable to loss of activity of a
regulatory hydrogenase. A zinc finger-like region
CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported
the regulatory hypothesis. However, more recent work
(PUBMED:11375153) shows the direct effect is on the
activity of expressed hydrogenases with nickel/iron
centers, rather than on expression.
Length = 711
Score = 26.3 bits (58), Expect = 2.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 116 SDGFDPVPDDLPPKKNNPKLL 136
S GF P P LPP N K+L
Sbjct: 345 SRGFAPQPLTLPPNGNPKKIL 365
>gnl|CDD|151780 pfam11339, DUF3141, Protein of unknown function (DUF3141). This
family of proteins with unknown function appears to be
restricted to Proteobacteria.
Length = 581
Score = 24.9 bits (55), Expect = 6.6
Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 94 RY--GLWIGSWLTLL 106
RY GL GSWLT L
Sbjct: 188 RYSGGLLGGSWLTAL 202
>gnl|CDD|179370 PRK02110, PRK02110, disulfide bond formation protein B;
Provisional.
Length = 169
Score = 24.6 bits (54), Expect = 9.4
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 109 IKCNPLGSDGFD---PVPDDLPPKK 130
I+ NP S G D P+ D LPP K
Sbjct: 94 IQLNPGFSCGIDALQPIVDSLPPAK 118
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.140 0.443
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,357,672
Number of extensions: 139588
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 34
Length of query: 139
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,179,401
Effective search space: 229867055
Effective search space used: 229867055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)