RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780883|ref|YP_003065296.1| hypothetical protein CLIBASIA_03900 [Candidatus Liberibacter asiaticus str. psy62] (139 letters) >gnl|CDD|178815 PRK00041, PRK00041, hypothetical protein; Validated. Length = 93 Score = 126 bits (318), Expect = 2e-30 Identities = 41/77 (53%), Positives = 52/77 (67%) Query: 48 GKFPKTLGRLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLR 107 + K + + I +IR YQ S + G SCR+ PTCSEY EAIAR+GLW GSWLTL R Sbjct: 1 MAWRKRPMKRLLIALIRFYQRFISPLLGPSCRFYPTCSEYAIEAIARHGLWKGSWLTLKR 60 Query: 108 LIKCNPLGSDGFDPVPD 124 +++C+P GFDPVPD Sbjct: 61 ILRCHPFHPGGFDPVPD 77 >gnl|CDD|161800 TIGR00278, TIGR00278, conserved hypothetical protein YidD. This model describes a family of small proteins of unknown function restricted to and broadly but not universally distributed among the Bacteria. Members frequently are found in the vicinity of rnpA, the gene for the protein subunit of ribonuclease P. A related protein is found in the temperature phage HP1 of Haemophilus influenzae. Annotation of some members of this family as hemolysins appears to represent propagation from an unpublished GenBank submission, L36462, attributed to Aeromonas hydrophila but a close match to E. coli. Length = 75 Score = 86.4 bits (214), Expect = 2e-18 Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 4/77 (5%) Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119 I +IR YQ+ S F SCR+ PTCS+Y EA+ +G G WLTL R+++C+PL G Sbjct: 2 IALIRGYQIFISPFFPPSCRFYPTCSQYAIEALKTHGFLKGGWLTLKRILRCHPLHPGGN 61 Query: 120 DPVPDDLPPKKNNPKLL 136 DPV P KK + L Sbjct: 62 DPV----PKKKQILESL 74 >gnl|CDD|172866 PRK14390, PRK14390, hypothetical protein; Provisional. Length = 63 Score = 78.5 bits (193), Expect = 5e-16 Identities = 37/63 (58%), Positives = 44/63 (69%) Query: 62 IIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDP 121 +I YQ FS FG CR++P+CS YGYEAI R+G W G WLTL RL +C+PL G DP Sbjct: 1 MISFYQKWFSPFFGPRCRFIPSCSSYGYEAITRHGPWKGGWLTLRRLSRCHPLTPCGCDP 60 Query: 122 VPD 124 VPD Sbjct: 61 VPD 63 >gnl|CDD|172862 PRK14386, PRK14386, hypothetical protein; Provisional. Length = 106 Score = 75.1 bits (184), Expect = 6e-15 Identities = 29/62 (46%), Positives = 41/62 (66%) Query: 62 IIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDP 121 IR+YQ+ S + G CRY+PTCS+Y EA+ +G G WL+ R+ +C+P G G+DP Sbjct: 8 FIRLYQIAISPLLGPRCRYIPTCSQYALEALQTHGAIKGVWLSSKRICRCHPWGGSGYDP 67 Query: 122 VP 123 VP Sbjct: 68 VP 69 >gnl|CDD|184656 PRK14389, PRK14389, hypothetical protein; Provisional. Length = 98 Score = 73.4 bits (180), Expect = 2e-14 Identities = 29/68 (42%), Positives = 45/68 (66%) Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119 + ++R Y+L+ S G++CR+ PTCS Y +A+ ++G GS+LTL RL +C+P G Sbjct: 7 MALVRGYRLLLSPWLGSACRFEPTCSAYSLQALEQHGAAAGSYLTLRRLARCHPWCDGGH 66 Query: 120 DPVPDDLP 127 DPVP + P Sbjct: 67 DPVPQEKP 74 >gnl|CDD|172864 PRK14388, PRK14388, hypothetical protein; Provisional. Length = 82 Score = 73.0 bits (179), Expect = 3e-14 Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 4/78 (5%) Query: 62 IIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDP 121 ++R YQ S + GN+CR+ PTCSEY EAI+ +G G W T R+IKC P G+D Sbjct: 8 LLRFYQYFISPLLGNNCRFHPTCSEYAKEAISMHGSIKGLWFTFKRIIKCQPFCDGGYDT 67 Query: 122 VPDDLPPKKNNPKLLSKK 139 VP + N K L+KK Sbjct: 68 VPISI----KNSKPLNKK 81 >gnl|CDD|172847 PRK14371, PRK14371, hypothetical protein; Provisional. Length = 81 Score = 72.7 bits (178), Expect = 3e-14 Identities = 28/68 (41%), Positives = 42/68 (61%) Query: 56 RLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG 115 R + + I+ Y+ S + + CR+ P+CS Y YEAI +GL G WL++ RL +C+P Sbjct: 2 RKLALVPIQFYRYAISPLMASHCRFYPSCSCYAYEAIENHGLLRGGWLSVRRLGRCHPWN 61 Query: 116 SDGFDPVP 123 G+DPVP Sbjct: 62 PGGYDPVP 69 >gnl|CDD|184651 PRK14370, PRK14370, hypothetical protein; Provisional. Length = 120 Score = 72.2 bits (177), Expect = 4e-14 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 52 KTLGRLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKC 111 K L +L+ + I YQ I S + CRY PTCS YG +AIA +G+ GS L L R+ +C Sbjct: 7 KYLYKLL-LAFIHFYQRIISPILPARCRYYPTCSNYGKQAIAWHGVGKGSLLLLKRIGRC 65 Query: 112 NPLGSDGFDPVP 123 +PLG G D VP Sbjct: 66 HPLGGHGIDFVP 77 >gnl|CDD|184655 PRK14387, PRK14387, hypothetical protein; Provisional. Length = 84 Score = 72.3 bits (177), Expect = 4e-14 Identities = 30/70 (42%), Positives = 41/70 (58%) Query: 61 GIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFD 120 +R Y+L S + G CR+ P+CSEY A+ +G GSWL L R+ +CNP G G+D Sbjct: 10 LGLRAYKLTLSPLIGRQCRFTPSCSEYTAAALKDHGPLKGSWLGLRRICRCNPFGGSGYD 69 Query: 121 PVPDDLPPKK 130 P P P+K Sbjct: 70 PPPPRHQPRK 79 >gnl|CDD|172859 PRK14383, PRK14383, hypothetical protein; Provisional. Length = 84 Score = 70.4 bits (172), Expect = 1e-13 Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Query: 62 IIRIYQLIFS-NVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFD 120 +R YQ + S +CR+ PTCS+Y EAI R+G G WL L R+++CNPL GFD Sbjct: 11 AVRWYQRVLSPRKPAPTCRFSPTCSQYAVEAIERHGALKGGWLALWRVLRCNPLVPGGFD 70 Query: 121 PVPDDLPPKKNNP 133 PVP+ P ++ Sbjct: 71 PVPEHFPARRPRH 83 >gnl|CDD|172854 PRK14378, PRK14378, hypothetical protein; Provisional. Length = 103 Score = 69.2 bits (169), Expect = 3e-13 Identities = 28/68 (41%), Positives = 42/68 (61%) Query: 56 RLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG 115 R I +IR+Y+ + S +G+ CRY P+CS YG EA+ +GL G +L + R+ +C+P Sbjct: 13 RNAAIAVIRLYRRVVSPFYGDVCRYYPSCSAYGLEAVQEHGLIFGGYLAVWRVCRCHPWA 72 Query: 116 SDGFDPVP 123 G D VP Sbjct: 73 EGGIDDVP 80 >gnl|CDD|184653 PRK14379, PRK14379, hypothetical protein; Provisional. Length = 95 Score = 69.1 bits (169), Expect = 3e-13 Identities = 31/76 (40%), Positives = 46/76 (60%) Query: 56 RLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLG 115 R I I ++R+YQ S + SCRY PTCS Y +A+ ++G +G + L R+++CNP Sbjct: 2 RKILIFLVRVYQKFISPILPPSCRYYPTCSSYMIDALKKHGPILGLIMGLARILRCNPFI 61 Query: 116 SDGFDPVPDDLPPKKN 131 G DPVPD ++N Sbjct: 62 RGGVDPVPDYFTLRRN 77 >gnl|CDD|172849 PRK14373, PRK14373, hypothetical protein; Provisional. Length = 73 Score = 68.1 bits (166), Expect = 7e-13 Identities = 29/64 (45%), Positives = 40/64 (62%) Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119 +G+IR YQ S + CRY PTCS+Y EA+ +YG + G L + R+ +C+P G G Sbjct: 10 LGLIRFYQYCISPLIPPRCRYTPTCSQYAVEAVKKYGAFKGGRLAIKRIARCHPFGGHGH 69 Query: 120 DPVP 123 DPVP Sbjct: 70 DPVP 73 >gnl|CDD|172852 PRK14376, PRK14376, hypothetical protein; Provisional. Length = 176 Score = 64.2 bits (156), Expect = 1e-11 Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 61 GIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFD 120 G++R+Y+ +S CR+ P+CS Y A+ R+G G L + RL++C PL + G+D Sbjct: 47 GLVRLYRAGWSGRNAGCCRFEPSCSAYALTAVRRHGGVRGGLLAVRRLLRCQPLSAGGYD 106 Query: 121 PVPDDLPPKKNNPKLLSK 138 PVP + P P + K Sbjct: 107 PVPGEAPGTSVGPGTVRK 124 >gnl|CDD|184650 PRK14369, PRK14369, hypothetical protein; Provisional. Length = 119 Score = 63.5 bits (154), Expect = 2e-11 Identities = 29/70 (41%), Positives = 42/70 (60%) Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119 + +I++YQ S + G C+Y P+CS YGY AI R+G G+ LT R+++CNP G Sbjct: 6 LALIKLYQWTISPLLGPVCKYYPSCSHYGYTAIDRHGAIKGTALTAWRILRCNPWSLGGV 65 Query: 120 DPVPDDLPPK 129 D VP P+ Sbjct: 66 DHVPPRKRPR 75 >gnl|CDD|172857 PRK14381, PRK14381, hypothetical protein; Provisional. Length = 103 Score = 63.0 bits (153), Expect = 3e-11 Identities = 28/75 (37%), Positives = 45/75 (60%) Query: 49 KFPKTLGRLIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRL 108 +F + L I +G+I +Y+ S + G+ CR+ P+CS+Y +A+ +G +G WLT+ R+ Sbjct: 5 RFLQNLPVRICLGLIHLYRWTISPLLGSPCRFFPSCSQYALQALKHHGCIMGLWLTIKRI 64 Query: 109 IKCNPLGSDGFDPVP 123 KC P G D VP Sbjct: 65 GKCGPWHPGGIDLVP 79 >gnl|CDD|184654 PRK14380, PRK14380, hypothetical protein; Provisional. Length = 81 Score = 61.9 bits (150), Expect = 5e-11 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 63 IRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDPV 122 I++YQ S + CRY P+CSEY AI YG+ G + L RL +C+P G+DP+ Sbjct: 16 IKMYQYFISPLITPCCRYYPSCSEYADSAIKHYGVIKGLLMALNRLSRCHPWSKGGYDPL 75 Query: 123 PDDLPPKKN 131 P KN Sbjct: 76 ---FPNDKN 81 >gnl|CDD|172848 PRK14372, PRK14372, hypothetical protein; Provisional. Length = 97 Score = 61.9 bits (150), Expect = 6e-11 Identities = 28/64 (43%), Positives = 35/64 (54%) Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119 I IR YQ S C+Y P+CS Y EAI R+G + G L +LRL++C P G Sbjct: 2 IRGIRWYQQRISANTPPCCKYYPSCSNYAIEAIERFGAFKGGVLAVLRLLRCRPWSRGGI 61 Query: 120 DPVP 123 D VP Sbjct: 62 DDVP 65 >gnl|CDD|172858 PRK14382, PRK14382, hypothetical protein; Provisional. Length = 68 Score = 58.6 bits (142), Expect = 6e-10 Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119 I I+ YQ S ++ +SCR+ PTCS Y +I +YG GS R+++CNP G Sbjct: 6 IKFIKFYQKFISPLYPSSCRFYPTCSTYAILSIEKYGALKGSLKAFWRILRCNPFSKGGV 65 Query: 120 D 120 D Sbjct: 66 D 66 >gnl|CDD|172867 PRK14391, PRK14391, hypothetical protein; Provisional. Length = 84 Score = 57.0 bits (137), Expect = 2e-09 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 4/76 (5%) Query: 60 IGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGF 119 I +I++Y+ I S + +CR+ PTCSEY +A G + L+ R+++CNPL S GF Sbjct: 6 IQLIQLYKKIISPLLPPACRFTPTCSEYAAQAFQECGFFQAIQLSAWRILRCNPL-SQGF 64 Query: 120 DPVPDDLPPKKNNPKL 135 D D LPP L Sbjct: 65 D---DPLPPNTKGTNL 77 >gnl|CDD|172861 PRK14385, PRK14385, hypothetical protein; Provisional. Length = 96 Score = 56.4 bits (136), Expect = 3e-09 Identities = 27/71 (38%), Positives = 38/71 (53%) Query: 57 LIGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGS 116 LI I +I+IYQ S + G C Y P+CS Y E + +Y + L LR+I+CN L Sbjct: 12 LILILLIKIYQNTLSKIVGFQCIYKPSCSNYALECLKKYNILTALILITLRIIRCNALFK 71 Query: 117 DGFDPVPDDLP 127 G + +P P Sbjct: 72 GGNESLPTKKP 82 >gnl|CDD|172851 PRK14375, PRK14375, hypothetical protein; Provisional. Length = 70 Score = 55.0 bits (132), Expect = 6e-09 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 62 IIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGS-DGFD 120 +I +Y+ S CRY PTCSEY EA+ +G+ G +LT RL++C+PL D +D Sbjct: 2 LINLYRYCISPFIPARCRYYPTCSEYALEALKTHGILKGLYLTTRRLLRCHPLSKRDYYD 61 Query: 121 PVP 123 VP Sbjct: 62 LVP 64 >gnl|CDD|172860 PRK14384, PRK14384, hypothetical protein; Provisional. Length = 56 Score = 50.4 bits (120), Expect = 1e-07 Identities = 22/49 (44%), Positives = 33/49 (67%) Query: 76 NSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFDPVPD 124 +SCR+ P+CS Y A+ R+G+ GS LT+ RL++C+P G D VP+ Sbjct: 2 SSCRFYPSCSCYAETALKRFGVIKGSGLTVWRLLRCHPFHPGGVDFVPE 50 >gnl|CDD|172853 PRK14377, PRK14377, hypothetical protein; Provisional. Length = 104 Score = 49.4 bits (117), Expect = 3e-07 Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 61 GIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSDGFD 120 G++ +Y+ S G CR+ PTCSEY A+ ++ L +L RL+KC P G D Sbjct: 12 GLVHLYRWAISPFLGAPCRFFPTCSEYALVALKKHPLRKSLFLIAKRLLKCGPWCIGGID 71 Query: 121 PVP 123 VP Sbjct: 72 LVP 74 >gnl|CDD|184652 PRK14374, PRK14374, hypothetical protein; Provisional. Length = 118 Score = 36.6 bits (84), Expect = 0.002 Identities = 21/61 (34%), Positives = 27/61 (44%) Query: 58 IGIGIIRIYQLIFSNVFGNSCRYLPTCSEYGYEAIARYGLWIGSWLTLLRLIKCNPLGSD 117 I IR YQ FS +SCR+ PTCS Y + +R++ CNP S Sbjct: 12 IFTASIRGYQRFFSAFTFSSCRFYPTCSNYALWLLCFENPLSAMGKIAIRILSCNPFCSG 71 Query: 118 G 118 G Sbjct: 72 G 72 >gnl|CDD|180778 PRK06959, PRK06959, putative threonine-phosphate decarboxylase; Provisional. Length = 339 Score = 28.1 bits (63), Expect = 0.82 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%) Query: 90 EAIARYGLWIGSWLTLLRLIKCNPLGSDGFDPVPDDLPP 128 EA RYG+ +WL L I NP G PVP +P Sbjct: 14 EAARRYGIPYDAWLDLSTGI--NPHGY----PVP-PVPA 45 >gnl|CDD|161730 TIGR00143, hypF, [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression. Length = 711 Score = 26.3 bits (58), Expect = 2.5 Identities = 11/21 (52%), Positives = 12/21 (57%) Query: 116 SDGFDPVPDDLPPKKNNPKLL 136 S GF P P LPP N K+L Sbjct: 345 SRGFAPQPLTLPPNGNPKKIL 365 >gnl|CDD|151780 pfam11339, DUF3141, Protein of unknown function (DUF3141). This family of proteins with unknown function appears to be restricted to Proteobacteria. Length = 581 Score = 24.9 bits (55), Expect = 6.6 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 2/15 (13%) Query: 94 RY--GLWIGSWLTLL 106 RY GL GSWLT L Sbjct: 188 RYSGGLLGGSWLTAL 202 >gnl|CDD|179370 PRK02110, PRK02110, disulfide bond formation protein B; Provisional. Length = 169 Score = 24.6 bits (54), Expect = 9.4 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 3/25 (12%) Query: 109 IKCNPLGSDGFD---PVPDDLPPKK 130 I+ NP S G D P+ D LPP K Sbjct: 94 IQLNPGFSCGIDALQPIVDSLPPAK 118 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.140 0.443 Gapped Lambda K H 0.267 0.0658 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,357,672 Number of extensions: 139588 Number of successful extensions: 255 Number of sequences better than 10.0: 1 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 34 Length of query: 139 Length of database: 5,994,473 Length adjustment: 84 Effective length of query: 55 Effective length of database: 4,179,401 Effective search space: 229867055 Effective search space used: 229867055 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 52 (24.0 bits)