RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780883|ref|YP_003065296.1| hypothetical protein
CLIBASIA_03900 [Candidatus Liberibacter asiaticus str. psy62]
         (139 letters)



>1o26_A Thymidylate synthase THYX; TM0449, thymidylate synthase
           complementing protein, structural genomics, JCSG, PSI;
           HET: FAD UMP PGE; 1.60A {Thermotoga maritima} (A:)
          Length = 232

 Score = 25.3 bits (55), Expect = 3.1
 Identities = 5/35 (14%), Positives = 9/35 (25%), Gaps = 3/35 (8%)

Query: 56  RLIGIGIIRIYQLIFSNVF---GNSCRYLPTCSEY 87
           +   + I RI++      F              E 
Sbjct: 196 QQYALAIARIFKEKCPWTFEAFLKYAYKGDILKEV 230


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 25.1 bits (54), Expect = 4.0
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 7/38 (18%)

Query: 27  IQKKGSPLLLKNNTP----KSRNWNGKFPKTLGRLIGI 60
           IQ+K  PLLL N       +S++  G   KT    + +
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTG---KTAAFALTM 179


>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome,
          structural genomics, PSI-2 protein structure
          initiative; 2.30A {Vibrio paracholerae} (A:)
          Length = 192

 Score = 24.6 bits (53), Expect = 5.7
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 65 IYQLIFSNVFGNSCRYLPTCSEYGYE 90
          I++L   ++  N  +Y+    +YG E
Sbjct: 70 IWRLCVYSIVINCRKYVELNQKYGKE 95


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.140    0.443 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,148,374
Number of extensions: 50012
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 5
Length of query: 139
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 59
Effective length of database: 2,251,649
Effective search space: 132847291
Effective search space used: 132847291
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)