HHsearch alignment for GI: 254780885 and conserved domain: pfam07238

>pfam07238 PilZ PilZ domain. This domain is found in a wide variety of bacterial signalling proteins.
Probab=98.27  E-value=5.6e-06  Score=56.90  Aligned_cols=86  Identities=24%  Similarity=0.287  Sum_probs=65.8

Q ss_pred             HHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCCCCCCCEEEE-------CC---EEEEEEEEECC--
Q ss_conf             2102567477776513689957998898999987424204551577899855897-------34---66999999389--
Q gi|254780885|r  116 DCRAYGRKITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQIEMFSKVLF-------ND---ILGRVVRIFPG--  183 (207)
Q Consensus       116 e~R~h~R~vPr~~~~~~~l~l~DG~~~~criiDiS~SGAAi~~~~rp~iGs~V~v-------G~---~~grVVRh~~~--  183 (207)
T Consensus         1 ~rR~~~R~~~~~~~---~~~~~~~~~~~~~~~DiS~gG~~i~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~Vv~~~~~~~   77 (102)
T pfam07238         1 QRRREPRVPVNLPV---TLLLGGGELYSGVIIDISLGGAALRLPEPLQLGDEVRLRLTLPDDGIKLLVPGRVVRIRPDGD   77 (102)
T ss_pred             CCCCCCEECEEEEE---EEECCCCCEEEEEEHHHCCCCEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEEEEECCCCC
T ss_conf             96787450357889---999389989999964437884899708765579719999996999808982789999915898


Q ss_pred             --EEEEEECCCCCCCHHHHHHHHHC
Q ss_conf             --08999716778423677875303
Q gi|254780885|r  184 --GIAIEFSSVQESNIAFKSLINHC  206 (207)
Q Consensus       184 --GfaVeF~~~q~~~~~~~~~~~~~  206 (207)
T Consensus        78 ~~~~G~~F~~~~--~~~~~~l~~~~  100 (102)
T pfam07238        78 GYGVGVQFLELD--EESRRLLERLL  100 (102)
T ss_pred             CEEEEEEEEECC--HHHHHHHHHHH
T ss_conf             289988995399--99999879862