Query         gi|254780885|ref|YP_003065298.1| hypothetical protein CLIBASIA_03910 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 207
No_of_seqs    61 out of 63
Neff          4.3 
Searched_HMMs 33803
Date          Wed Jun  1 18:55:29 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780885.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1ywu_A Hypothetical protein P  98.8   7E-08 2.1E-12   68.2   9.7  102    7-110    24-130 (149)
  2 >1ywu_A Hypothetical protein P  98.5   1E-06 3.1E-11   61.0   9.6   90  111-204    24-125 (149)
  3 >2rde_A Uncharacterized protei  97.5 0.00039 1.2E-08   45.2   7.3   77   18-95      2-88  (114)
  4 >3cnr_A Type IV fimbriae assem  96.9  0.0003 8.8E-09   45.9   1.3   64   15-80      3-71  (117)
  5 >2gjg_A Hypothetical protein P  96.7  0.0053 1.6E-07   38.3   6.6   75   34-108    28-115 (125)
  6 >2rde_A Uncharacterized protei  96.4   0.074 2.2E-06   31.3  13.6   68  133-201    10-98  (114)
  7 >2gjg_A Hypothetical protein P  96.3   0.011 3.3E-07   36.3   6.1   61  136-196    23-102 (125)
  8 >3cnr_A Type IV fimbriae assem  96.3  0.0064 1.9E-07   37.8   4.6   71  133-204    12-101 (117)
  9 >3a24_A Alpha-galactosidase; g  63.3      11 0.00032   18.1   4.8   24   76-100    94-117 (270)
 10 >2e6q_A Obscurin-like protein   37.9      20 0.00059   16.4   2.1   77   84-166    25-111 (112)
 11 >2ltn_A PEA lectin, alpha chai  34.3      12 0.00036   17.7   0.5   16  184-199    40-55  (80)
 12 >2eif_A IF-5A, protein (eukary  32.7      29 0.00087   15.4   2.2   11   34-44     26-36  (74)
 13 >1iz6_A Initiation factor 5A;   31.6      30 0.00089   15.3   2.1   11   34-44     22-32  (70)
 14 >1x6o_A Eukaryotic initiation   31.1      31 0.00092   15.2   2.1   12  142-153    47-58  (94)
 15 >3cpf_A Eukaryotic translation  30.9      30 0.00088   15.4   2.0   11   34-44     22-32  (70)
 16 >1khi_A HEX1; membrane sealing  29.8      34   0.001   15.0   2.1   11  142-152    51-61  (101)
 17 >1bkb_A Translation initiation  29.5      34   0.001   15.0   2.1   11   34-44     24-34  (71)
 18 >3er0_A Eukaryotic translation  26.2      42  0.0012   14.4   2.1   13  142-154    47-59  (94)
 19 >1wdi_A Hypothetical protein T  26.0      39  0.0011   14.7   1.9   66  133-198    57-148 (345)
 20 >2cgh_A Biotin ligase; 1.8A {M  25.8      44  0.0013   14.3   3.7   27   26-52      5-31  (47)
 21 >3hks_A EIF-5A-2, eukaryotic t  25.8      42  0.0012   14.4   2.1   13  142-154    45-57  (92)
 22 >2d73_A Alpha-glucosidase SUSB  21.0      36  0.0011   14.9   0.9   45  151-195   101-161 (309)
 23 >3d2u_A UL18 protein; MHC clas  20.9      20 0.00059   16.4  -0.4   51  103-153    35-88  (95)
 24 >2aqj_A Tryptophan halogenase,  20.8      55  0.0016   13.7   4.0  102   84-187    31-133 (273)
 25 >1ssf_A Transformation related  20.4      56  0.0017   13.7   3.4   35   56-90      9-44  (156)

No 1  
>>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, PSI, protein structure initiative; NMR {Pseudomonas aeruginosa PAO1} (A:)
Probab=98.77  E-value=7e-08  Score=68.17  Aligned_cols=102  Identities=13%  Similarity=0.040  Sum_probs=79.7

Q ss_pred             HHHHHHHCCCEEEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEECCCC-CCCCCEEEEEEC----CCCCEEEEEEEECC
Q ss_conf             4322201062147999705799468983026999875685499942788-767974999995----54437699999308
Q gi|254780885|r    7 NLQFIDQRAFQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPM-FLVGERSIVFVE----KVGRIEGKVVNFDS   81 (207)
Q Consensus         7 ~~~~~drR~f~RV~v~l~GR~ll~d~~E~~C~t~diSpgg~~l~~~~~~-~~~Gervv~Yld----~iGrlEG~V~r~~~   81 (207)
                      +.+..++|+|.|+++.+++.+..+ ...++|.+.|||.+|+++.++.+. ...|+.+.++|.    ....++|+|++...
T Consensus        24 ~~~~~~rR~~~Rv~~~~~~~i~~~-~~~~~~~~~DiS~~G~~i~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~Vv~~~~  102 (149)
T 1ywu_A           24 SDQHDERRRFHRIAFDADSEILQG-ERRWEVLLHDVSLHGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARD  102 (149)
T ss_dssp             CSCCCSSCCCCSSCCSCEEEEEET-TEEEEEEEEEECSSEEEEECSSCCCCCTTSEEEEEEESSSSCEEEEEEEEEEEET
T ss_pred             CCCCCCCCCCEEEEECCEEEEEEC-CEEEEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECC
T ss_conf             889542578766874033999989-9999999998147867997578767889956999998699856999999999649


Q ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHHCCC
Q ss_conf             98389999769878999999999876424
Q gi|254780885|r   82 NRGYAVRIVTSENERRKLADKLIWLANKD  110 (207)
Q Consensus        82 ~~GFav~l~~t~~kR~kLA~qLtWlanr~  110 (207)
                       .+..+.|...+..-.....++.|.-..+
T Consensus       103 -~~~G~~F~~~~~~~~~~l~~~i~~~~~~  130 (149)
T 1ywu_A          103 -GLLGFECQHIDLDSISHLRRLVELNLGD  130 (149)
T ss_dssp             -TEEEEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred             -CEEEEEEEEECHHHHHHHHHHHHHHCCC
T ss_conf             -9899999752888999999999876799


No 2  
>>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, PSI, protein structure initiative; NMR {Pseudomonas aeruginosa PAO1} (A:)
Probab=98.51  E-value=1e-06  Score=61.00  Aligned_cols=90  Identities=11%  Similarity=0.100  Sum_probs=66.2

Q ss_pred             CCCCCHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCCCC--CCCEEEE---------CCEEEEEEE
Q ss_conf             36750210256747777651368995799889899998742420455157789--9855897---------346699999
Q gi|254780885|r  111 DLHLQDCRAYGRKITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQIE--MFSKVLF---------NDILGRVVR  179 (207)
Q Consensus       111 ~l~l~e~R~h~R~vPr~~~~~~~l~l~DG~~~~criiDiS~SGAAi~~~~rp~--iGs~V~v---------G~~~grVVR  179 (207)
                      .....+.|+|.|+.-..+   .++. .+|..++|.+.|+|.+|+++.++..++  .|..+.+         ..+.|+|++
T Consensus        24 ~~~~~~rR~~~Rv~~~~~---~~i~-~~~~~~~~~~~DiS~~G~~i~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~Vv~   99 (149)
T 1ywu_A           24 SDQHDERRRFHRIAFDAD---SEIL-QGERRWEVLLHDVSLHGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAW   99 (149)
T ss_dssp             CSCCCSSCCCCSSCCSCE---EEEE-ETTEEEEEEEEEECSSEEEEECSSCCCCCTTSEEEEEEESSSSCEEEEEEEEEE
T ss_pred             CCCCCCCCCCEEEEECCE---EEEE-ECCEEEEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEE
T ss_conf             889542578766874033---9999-899999999998147867997578767889956999998699856999999999


Q ss_pred             EECCEEEEEECCC-CCCCHHHHHHHH
Q ss_conf             9389089997167-784236778753
Q gi|254780885|r  180 IFPGGIAIEFSSV-QESNIAFKSLIN  204 (207)
Q Consensus       180 h~~~GfaVeF~~~-q~~~~~~~~~~~  204 (207)
                      ..++++|++|.++ .+.......++.
T Consensus       100 ~~~~~~G~~F~~~~~~~~~~l~~~i~  125 (149)
T 1ywu_A          100 ARDGLLGFECQHIDLDSISHLRRLVE  125 (149)
T ss_dssp             EETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred             ECCCEEEEEEEEECHHHHHHHHHHHH
T ss_conf             64998999997528889999999998


No 3  
>>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.92A {Vibrio cholerae O395} (A:138-251)
Probab=97.52  E-value=0.00039  Score=45.24  Aligned_cols=77  Identities=21%  Similarity=0.359  Sum_probs=40.5

Q ss_pred             EEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEECC--CCCCCCCEEEEEE--CCCC-----CEEEEEEEE-CCCCCEEE
Q ss_conf             479997057994689830269998756854999427--8876797499999--5544-----376999993-08983899
Q gi|254780885|r   18 RVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDV--PMFLVGERSIVFV--EKVG-----RIEGKVVNF-DSNRGYAV   87 (207)
Q Consensus        18 RV~v~l~GR~ll~d~~E~~C~t~diSpgg~~l~~~~--~~~~~Gervv~Yl--d~iG-----rlEG~V~r~-~~~~GFav   87 (207)
                      ||++++++..... ...+.|.+.|+|.+|.++..+.  +-..+|+.|.+.+  ...|     .+.|+|.++ ..+.+..+
T Consensus         2 Rv~~~lp~~i~~~-~~~~~g~i~DiS~gG~~i~~~~~~~~~~~g~~i~l~~~l~~~~~~~~~~l~g~V~~v~~~~~~~~~   80 (114)
T 2rde_A            2 RFELNLAGKVLFD-EHRGDCELRDLSRSGCRFITPPLGKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRSLHHARY   80 (114)
T ss_dssp             BEEEEEEEEEEET-TEEEEEEEEEECSSEEEEEECTTSCCCCTTCEEEEEEBSSTTSSCBCSCEEEEEEEEEECSSCEEE
T ss_pred             EEEEEEEEEEEEC-CEEEEEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCEEE
T ss_conf             3897789999989-999999998756477789957867655899889999997459982689999999998976896899


Q ss_pred             EEECCHHH
Q ss_conf             99769878
Q gi|254780885|r   88 RIVTSENE   95 (207)
Q Consensus        88 ~l~~t~~k   95 (207)
                      -++..+-.
T Consensus        81 GvqF~~~~   88 (114)
T 2rde_A           81 GLEFNEEG   88 (114)
T ss_dssp             EEEECHHH
T ss_pred             EEEECCCC
T ss_conf             99988999


No 4  
>>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A (A:)
Probab=96.90  E-value=0.0003  Score=45.95  Aligned_cols=64  Identities=14%  Similarity=0.185  Sum_probs=37.6

Q ss_pred             CCEEEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEECCCCCCCCCEEEEEE--CCCC---CEEEEEEEEC
Q ss_conf             6214799970579946898302699987568549994278876797499999--5544---3769999930
Q gi|254780885|r   15 AFQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPMFLVGERSIVFV--EKVG---RIEGKVVNFD   80 (207)
Q Consensus        15 ~f~RV~v~l~GR~ll~d~~E~~C~t~diSpgg~~l~~~~~~~~~Gervv~Yl--d~iG---rlEG~V~r~~   80 (207)
                      +|.|+++.+.-.|.-. ...|.|.+.|+|.||+.+.++.+ ..+|+++.+-|  ...+   .++|+|+.+.
T Consensus         3 a~pR~p~~l~v~~~~~-~~~~~~~~~diS~gGl~i~t~~~-l~~G~~v~l~~~lp~~~~~i~~~g~V~w~~   71 (117)
T 3cnr_A            3 AXNARQGILSLALKDK-PALYSAYXPFVKGGGIFVPTPKR-YXLGDEVFLLLTLPDSSERLPVAGKVIWTT   71 (117)
T ss_dssp             ------CCEEEECCSH-HHHHHHEETTBTTCEEEEECCSC-CCTTCEEEEEEECTTCSCEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEECCH-HHHHHHHCCCCCCCEEEEECCCC-CCCCCEEEEEEEECCCCCEEEEEEEEEEEC
T ss_conf             7888887699998999-99999841206797589716997-789999999999537882688889999966


No 5  
>>2gjg_A Hypothetical protein PP4397; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Pseudomonas putida KT2440} (A:124-248)
Probab=96.74  E-value=0.0053  Score=38.32  Aligned_cols=75  Identities=13%  Similarity=0.053  Sum_probs=33.2

Q ss_pred             CEEEEEEEECCCCEEEEECCCCC---CCCCEEE-EEECCCC---CEEEEEEEECCC---CC--EEEEE-ECCHHHHHHHH
Q ss_conf             30269998756854999427887---6797499-9995544---376999993089---83--89999-76987899999
Q gi|254780885|r   34 EYNCIVREISPGGLCIVCDVPMF---LVGERSI-VFVEKVG---RIEGKVVNFDSN---RG--YAVRI-VTSENERRKLA  100 (207)
Q Consensus        34 E~~C~t~diSpgg~~l~~~~~~~---~~Gervv-~Yld~iG---rlEG~V~r~~~~---~G--Fav~l-~~t~~kR~kLA  100 (207)
                      -+.|++.|+|.||+++.++.+.+   .++..+. +-++--+   .+.|+|.++...   ..  +.++| +.++..+++|.
T Consensus        28 ~~~~~~~DIS~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~G~~F~~l~~~~~~~L~  107 (125)
T 2gjg_A           28 AXRGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNPLGLVDTXVELRHLHYEERINTTFAGVRFHNLSGQAQRKIE  107 (125)
T ss_dssp             CEEEEEEEECSSEEEEEEESCCGGGCCTTCEEEEEEECTTTCEEEEEEEEEEEEEEGGGTEEEEEEEEESCCHHHHHHHH
T ss_pred             EEEEEEEEECCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEECCCHHHHHHHH
T ss_conf             67789986468854899557656566464399986754888616788999999963788708999999059999999999


Q ss_pred             HHHHHHHC
Q ss_conf             99998764
Q gi|254780885|r  101 DKLIWLAN  108 (207)
Q Consensus       101 ~qLtWlan  108 (207)
                      .-+.++..
T Consensus       108 ~~I~~~qr  115 (125)
T 2gjg_A          108 SFVYQLQR  115 (125)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 6  
>>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.92A {Vibrio cholerae O395} (A:138-251)
Probab=96.39  E-value=0.074  Score=31.28  Aligned_cols=68  Identities=15%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             EEEECCCCEEEEEEEEEECCCEEEECCC---CCCCCCEEEE-------C-----CEEEEEEEEECCE----EEEEECCCC
Q ss_conf             8995799889899998742420455157---7899855897-------3-----4669999993890----899971677
Q gi|254780885|r  133 QLVLNDNTKHSCKVIDISESGVSVSVDL---QIEMFSKVLF-------N-----DILGRVVRIFPGG----IAIEFSSVQ  193 (207)
Q Consensus       133 ~l~l~DG~~~~criiDiS~SGAAi~~~~---rp~iGs~V~v-------G-----~~~grVVRh~~~G----faVeF~~~q  193 (207)
                      +++ .+|..+.|.+.|+|.+|+.+..+.   .+++|..|.+       |     .+.|.|++....+    ||++|.++.
T Consensus        10 ~i~-~~~~~~~g~i~DiS~gG~~i~~~~~~~~~~~g~~i~l~~~l~~~~~~~~~~l~g~V~~v~~~~~~~~~GvqF~~~~   88 (114)
T 2rde_A           10 KVL-FDEHRGDCELRDLSRSGCRFITPPLGKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRSLHHARYGLEFNEEG   88 (114)
T ss_dssp             EEE-ETTEEEEEEEEEECSSEEEEEECTTSCCCCTTCEEEEEEBSSTTSSCBCSCEEEEEEEEEECSSCEEEEEEECHHH
T ss_pred             EEE-ECCEEEEEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCEEEEEEECCCC
T ss_conf             999-8999999999875647778995786765589988999999745998268999999999897689689999988999


Q ss_pred             CC--CHHHHH
Q ss_conf             84--236778
Q gi|254780885|r  194 ES--NIAFKS  201 (207)
Q Consensus       194 ~~--~~~~~~  201 (207)
                      +.  +.++..
T Consensus        89 ~~~~~~L~~~   98 (114)
T 2rde_A           89 RNNAKNLLAQ   98 (114)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             8999999998


No 7  
>>2gjg_A Hypothetical protein PP4397; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Pseudomonas putida KT2440} (A:124-248)
Probab=96.32  E-value=0.011  Score=36.29  Aligned_cols=61  Identities=16%  Similarity=0.166  Sum_probs=44.5

Q ss_pred             ECCCCEEEEEEEEEECCCEEEECCCCCCCCC----EE---EE--C----CEEEEEEEEECC------EEEEEECCCCCCC
Q ss_conf             5799889899998742420455157789985----58---97--3----466999999389------0899971677842
Q gi|254780885|r  136 LNDNTKHSCKVIDISESGVSVSVDLQIEMFS----KV---LF--N----DILGRVVRIFPG------GIAIEFSSVQESN  196 (207)
Q Consensus       136 l~DG~~~~criiDiS~SGAAi~~~~rp~iGs----~V---~v--G----~~~grVVRh~~~------GfaVeF~~~q~~~  196 (207)
                      .++|..+.|++.|+|.+|+++.++...+.+.    .+   .+  +    .+.|+|++....      -+|++|..+-..+
T Consensus        23 ~~~~~~~~~~~~DIS~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~G~~F~~l~~~~  102 (125)
T 2gjg_A           23 LKGNGAXRGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNPLGLVDTXVELRHLHYEERINTTFAGVRFHNLSGQA  102 (125)
T ss_dssp             CCSSSCEEEEEEEECSSEEEEEEESCCGGGCCTTCEEEEEEECTTTCEEEEEEEEEEEEEEGGGTEEEEEEEEESCCHHH
T ss_pred             CCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEECCCHHH
T ss_conf             78883677899864688548995576565664643999867548886167889999999637887089999990599999


No 8  
>>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A (A:)
Probab=96.25  E-value=0.0064  Score=37.81  Aligned_cols=71  Identities=20%  Similarity=0.339  Sum_probs=54.4

Q ss_pred             EEEE-CCCCEEEEEEEEEECCCEEEECCCCCCCCCEEEE-----C-----CEEEEEEEEEC--------CEEEEEECCCC
Q ss_conf             8995-7998898999987424204551577899855897-----3-----46699999938--------90899971677
Q gi|254780885|r  133 QLVL-NDNTKHSCKVIDISESGVSVSVDLQIEMFSKVLF-----N-----DILGRVVRIFP--------GGIAIEFSSVQ  193 (207)
Q Consensus       133 ~l~l-~DG~~~~criiDiS~SGAAi~~~~rp~iGs~V~v-----G-----~~~grVVRh~~--------~GfaVeF~~~q  193 (207)
                      .+++ .++..+.|...|+|..|..+.++..+++|+.|.+     +     .+.|+|++.-+        .|+||+|...-
T Consensus        12 ~v~~~~~~~~~~~~~~diS~gGl~i~t~~~l~~G~~v~l~~~lp~~~~~i~~~g~V~w~~~~~~~~~~~~g~Gv~F~~~~   91 (117)
T 3cnr_A           12 SLALKDKPALYSAYXPFVKGGGIFVPTPKRYXLGDEVFLLLTLPDSSERLPVAGKVIWTTPAGAQGNRAAGIGVQFPDGP   91 (117)
T ss_dssp             EEECCSHHHHHHHEETTBTTCEEEEECCSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC------CCEEEEECCSSH
T ss_pred             EEEECCHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCC
T ss_conf             99989999999984120679758971699778999999999953788268888999996678777888872799966688


Q ss_pred             CCCHHHHHHHH
Q ss_conf             84236778753
Q gi|254780885|r  194 ESNIAFKSLIN  204 (207)
Q Consensus       194 ~~~~~~~~~~~  204 (207)
                      +.+-+ +++|.
T Consensus        92 ~~~~~-r~~I~  101 (117)
T 3cnr_A           92 EGEAV-RNKIE  101 (117)
T ss_dssp             HHHHH-HHHHH
T ss_pred             CCHHH-HHHHH
T ss_conf             34789-99999


No 9  
>>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} (A:1-270)
Probab=63.30  E-value=11  Score=18.08  Aligned_cols=24  Identities=17%  Similarity=0.213  Sum_probs=13.7

Q ss_pred             EEEECCCCCEEEEEECCHHHHHHHH
Q ss_conf             9993089838999976987899999
Q gi|254780885|r   76 VVNFDSNRGYAVRIVTSENERRKLA  100 (207)
Q Consensus        76 V~r~~~~~GFav~l~~t~~kR~kLA  100 (207)
                      +.|+..+ |.|.++....++--++.
T Consensus        94 ~fRaydD-GvAfRy~~p~~~~~~I~  117 (270)
T 3a24_A           94 EFRAYND-GIAYRFVNQGKKPFRVV  117 (270)
T ss_dssp             EEEEETT-EEEEEEEECCCSCEEEE
T ss_pred             EEEECCC-CEEEEEEECCCCCEEEE
T ss_conf             9999269-87999981798868981


No 10 
>>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=37.94  E-value=20  Score=16.41  Aligned_cols=77  Identities=10%  Similarity=0.053  Sum_probs=45.9

Q ss_pred             CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHCCC-----CCCCCCCCCCEEEEE-----ECCCCEEEEEEEEEECCC
Q ss_conf             3899997698789999999998764243675021025-----674777765136899-----579988989999874242
Q gi|254780885|r   84 GYAVRIVTSENERRKLADKLIWLANKDDLHLQDCRAY-----GRKITRDREVDAQLV-----LNDNTKHSCKVIDISESG  153 (207)
Q Consensus        84 GFav~l~~t~~kR~kLA~qLtWlanr~~l~l~e~R~h-----~R~vPr~~~~~~~l~-----l~DG~~~~criiDiS~SG  153 (207)
                      -..+...+++.      -+++|+-|...+...++..+     .|+.-.......+|+     .+|...|.|...+---+.
T Consensus        25 ~v~l~C~~~~~------p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~~~~   98 (112)
T 2e6q_A           25 DAVFSLDLSTI------IQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDS   98 (112)
T ss_dssp             EEEEEEEESSC------CCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEETTEEEE
T ss_pred             EEEEEEEECCC------EEEEEEECCEECCCCCCCCCEEEECCCEEEECCCCEEEEEECCCCHHHCCEEEEEEECCEEEE
T ss_conf             79999994688------088998899896577773100110252356406966688879899889978999998995889


Q ss_pred             EEEECCCCCCCCC
Q ss_conf             0455157789985
Q gi|254780885|r  154 VSVSVDLQIEMFS  166 (207)
Q Consensus       154 AAi~~~~rp~iGs  166 (207)
                      +-|.....|.+-+
T Consensus        99 ~~L~V~~~p~~ps  111 (112)
T 2e6q_A           99 AALTIQESSGPSS  111 (112)
T ss_dssp             EEEEEECSSCSCC
T ss_pred             EEEEEECCCCCCC
T ss_conf             9999925796768


No 11 
>>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} (A:76-155)
Probab=34.27  E-value=12  Score=17.72  Aligned_cols=16  Identities=19%  Similarity=0.299  Sum_probs=12.1

Q ss_pred             EEEEEECCCCCCCHHH
Q ss_conf             0899971677842367
Q gi|254780885|r  184 GIAIEFSSVQESNIAF  199 (207)
Q Consensus       184 GfaVeF~~~q~~~~~~  199 (207)
                      =|||||.+.|+.+.-.
T Consensus        40 ~vAVEFDT~~n~~~~d   55 (80)
T 2ltn_A           40 TVAVEFDTFYNAAWDP   55 (80)
T ss_dssp             CEEEEEECSCCTTTSC
T ss_pred             EEEEEEECCCCCCCCC
T ss_conf             4999997400466599


No 12 
>>2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} (A:1-74)
Probab=32.70  E-value=29  Score=15.39  Aligned_cols=11  Identities=27%  Similarity=0.431  Sum_probs=5.9

Q ss_pred             CEEEEEEEECC
Q ss_conf             30269998756
Q gi|254780885|r   34 EYNCIVREISP   44 (207)
Q Consensus        34 E~~C~t~diSp   44 (207)
                      ++||++++||.
T Consensus        26 g~PCkIv~ist   36 (74)
T 2eif_A           26 GVPCEIVDISV   36 (74)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
T ss_conf             99899999998


No 13 
>>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} (A:1-70)
Probab=31.61  E-value=30  Score=15.32  Aligned_cols=11  Identities=18%  Similarity=0.422  Sum_probs=6.7

Q ss_pred             CEEEEEEEECC
Q ss_conf             30269998756
Q gi|254780885|r   34 EYNCIVREISP   44 (207)
Q Consensus        34 E~~C~t~diSp   44 (207)
                      ++||++++||.
T Consensus        22 g~PCkIv~ist   32 (70)
T 1iz6_A           22 DEPCRIVNITV   32 (70)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
T ss_conf             99999999998


No 14 
>>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI, protein structure initiative; 1.60A {Leishmania braziliensis} (A:1-94)
Probab=31.08  E-value=31  Score=15.23  Aligned_cols=12  Identities=58%  Similarity=0.888  Sum_probs=7.6

Q ss_pred             EEEEEEEEECCC
Q ss_conf             989999874242
Q gi|254780885|r  142 HSCKVIDISESG  153 (207)
Q Consensus       142 ~~criiDiS~SG  153 (207)
                      .||+|+++|.|-
T Consensus        47 ~PCkIv~istSk   58 (94)
T 1x6o_A           47 RPCKVIDLSVSK   58 (94)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEEEEEEEEEEC
T ss_conf             899998999616


No 15 
>>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} (A:1-70)
Probab=30.93  E-value=30  Score=15.36  Aligned_cols=11  Identities=27%  Similarity=0.467  Sum_probs=6.9

Q ss_pred             CEEEEEEEECC
Q ss_conf             30269998756
Q gi|254780885|r   34 EYNCIVREISP   44 (207)
Q Consensus        34 E~~C~t~diSp   44 (207)
                      ++||++++||.
T Consensus        22 g~PCkIv~ist   32 (70)
T 3cpf_A           22 GRPCKIVEMST   32 (70)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
T ss_conf             99999998999


No 16 
>>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} (A:1-101)
Probab=29.82  E-value=34  Score=15.02  Aligned_cols=11  Identities=55%  Similarity=0.890  Sum_probs=9.1

Q ss_pred             EEEEEEEEECC
Q ss_conf             98999987424
Q gi|254780885|r  142 HSCKVIDISES  152 (207)
Q Consensus       142 ~~criiDiS~S  152 (207)
                      .||+|+++|.|
T Consensus        51 ~PCkIv~istS   61 (101)
T 1khi_A           51 RPCQVIRISTS   61 (101)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCEEEEEEECC
T ss_conf             53599998736


No 17 
>>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} (A:1-71)
Probab=29.48  E-value=34  Score=15.02  Aligned_cols=11  Identities=36%  Similarity=0.404  Sum_probs=5.6

Q ss_pred             CEEEEEEEECC
Q ss_conf             30269998756
Q gi|254780885|r   34 EYNCIVREISP   44 (207)
Q Consensus        34 E~~C~t~diSp   44 (207)
                      ++||.+++||.
T Consensus        24 g~PCkIv~ist   34 (71)
T 1bkb_A           24 GEPCRVVEIEK   34 (71)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
T ss_conf             99999999999


No 18 
>>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} (A:1-94)
Probab=26.16  E-value=42  Score=14.44  Aligned_cols=13  Identities=38%  Similarity=0.828  Sum_probs=7.7

Q ss_pred             EEEEEEEEECCCE
Q ss_conf             9899998742420
Q gi|254780885|r  142 HSCKVIDISESGV  154 (207)
Q Consensus       142 ~~criiDiS~SGA  154 (207)
                      .||+|+++|.|..
T Consensus        47 ~PCKIveistSk~   59 (94)
T 3er0_A           47 RPCKIVDMSTSKT   59 (94)
T ss_dssp             EEEEEEEEEEECC
T ss_pred             EEEEEEEEEEECC
T ss_conf             7899999885079


No 19 
>>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} (A:)
Probab=26.04  E-value=39  Score=14.67  Aligned_cols=66  Identities=14%  Similarity=0.145  Sum_probs=38.8

Q ss_pred             EEEECCCCEEEEEEEEEECCCEEEEC-----------------CCCCCCCCEEEECC---------EEEEEEEEECCEEE
Q ss_conf             89957998898999987424204551-----------------57789985589734---------66999999389089
Q gi|254780885|r  133 QLVLNDNTKHSCKVIDISESGVSVSV-----------------DLQIEMFSKVLFND---------ILGRVVRIFPGGIA  186 (207)
Q Consensus       133 ~l~l~DG~~~~criiDiS~SGAAi~~-----------------~~rp~iGs~V~vG~---------~~grVVRh~~~Gfa  186 (207)
                      -|.+.|-.++|+|+.--..+|+.++.                 ..++.+|+.+.++.         ..++|....+.|+.
T Consensus        57 lLV~NdTkVipARL~g~k~tg~~iEilll~~l~~~~w~~lv~p~kk~k~G~~l~~~~~~~~~~~~~l~a~v~~~~~~~~~  136 (345)
T 1wdi_A           57 VLVFNESKVIPARLLARKPTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVR  136 (345)
T ss_dssp             EEEEEEEEECCEEEEEECTTSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC---
T ss_pred             EEEEECCEEEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCE
T ss_conf             99998998978899977068970899984145761354212105678989889963775322126737999997068727


Q ss_pred             EEECCCCCCCHH
Q ss_conf             997167784236
Q gi|254780885|r  187 IEFSSVQESNIA  198 (207)
Q Consensus       187 VeF~~~q~~~~~  198 (207)
                      +.|.+..-.+.+
T Consensus       137 ~~~~~~~~~~~l  148 (345)
T 1wdi_A          137 LLRFQGDLVAHL  148 (345)
T ss_dssp             -------CCEEE
T ss_pred             EEEECCCHHHHH
T ss_conf             986123168898


No 20 
>>2cgh_A Biotin ligase; 1.8A {Mycobacterium tuberculosis} (A:222-268)
Probab=25.83  E-value=44  Score=14.31  Aligned_cols=27  Identities=26%  Similarity=0.225  Sum_probs=16.1

Q ss_pred             EEEECCCCCEEEEEEEECCCCEEEEEC
Q ss_conf             799468983026999875685499942
Q gi|254780885|r   26 RFLLFDGTEYNCIVREISPGGLCIVCD   52 (207)
Q Consensus        26 R~ll~d~~E~~C~t~diSpgg~~l~~~   52 (207)
                      |..+|+..++.....|+.+.|..++-.
T Consensus         5 Rv~lpgg~~l~G~A~diD~~G~LvV~~   31 (47)
T 2cgh_A            5 RVELPGGQDVVGIARDIDDQGRLCLDV   31 (47)
T ss_dssp             EEEETTTEEEEEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCEEEEEEEEECCCCEEEEEE
T ss_conf             999789949999999999898099999


No 21 
>>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} (A:1-92)
Probab=25.78  E-value=42  Score=14.43  Aligned_cols=13  Identities=38%  Similarity=0.800  Sum_probs=7.8

Q ss_pred             EEEEEEEEECCCE
Q ss_conf             9899998742420
Q gi|254780885|r  142 HSCKVIDISESGV  154 (207)
Q Consensus       142 ~~criiDiS~SGA  154 (207)
                      .||+|+++|.|..
T Consensus        45 ~PCkIv~istSk~   57 (92)
T 3hks_A           45 RPCKVVEVSTSKT   57 (92)
T ss_dssp             EEEEEEEEEEECS
T ss_pred             EEEEEEEEEEECC
T ss_conf             9899999986568


No 22 
>>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* (A:1-309)
Probab=21.04  E-value=36  Score=14.85  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=27.7

Q ss_pred             CCCEEEECCCCCCCCCEEEE---------------CC-EEEEEEEEECCEEEEEECCCCCC
Q ss_conf             24204551577899855897---------------34-66999999389089997167784
Q gi|254780885|r  151 ESGVSVSVDLQIEMFSKVLF---------------ND-ILGRVVRIFPGGIAIEFSSVQES  195 (207)
Q Consensus       151 ~SGAAi~~~~rp~iGs~V~v---------------G~-~~grVVRh~~~GfaVeF~~~q~~  195 (207)
                      .+-..+.-..+|+.|..-.+               |. ...-++|-++||+|.+|--+++.
T Consensus       101 ~~~~~vde~~~~~~GK~~~v~d~yNEl~l~f~~~~~~~~l~l~fRvynDGVAfRY~lp~~~  161 (309)
T 2d73_A          101 TQTATFDETWQPVWGEEKEIRNHYNELAVTLYQPMNDRSIVIRFRLFNDGLGFRYEFPQQK  161 (309)
T ss_dssp             EEEEEEEEEECCSSSSSSCEEEEEEEEEEEEEEGGGTEEEEEEEEEETTEEEEEEEECCBT
T ss_pred             EEEEEECCEECCCCCEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCEEEEEEECCCC
T ss_conf             7863532187378871115731024899999715899359999999069889999947878


No 23 
>>3d2u_A UL18 protein; MHC class I homolog, disease mutation, glycation, glycoprotein, immune response, immunoglobulin domain, MHC I, pyrrolidone carboxylic acid; HET: NAG MAN BMA FUC; 2.21A {Human herpesvirus 5} (A:187-281)
Probab=20.86  E-value=20  Score=16.44  Aligned_cols=51  Identities=8%  Similarity=0.065  Sum_probs=27.9

Q ss_pred             HHHHHCCCCCCCCHHCCCCCCCCCC---CCCEEEEEECCCCEEEEEEEEEECCC
Q ss_conf             9987642436750210256747777---65136899579988989999874242
Q gi|254780885|r  103 LIWLANKDDLHLQDCRAYGRKITRD---REVDAQLVLNDNTKHSCKVIDISESG  153 (207)
Q Consensus       103 LtWlanr~~l~l~e~R~h~R~vPr~---~~~~~~l~l~DG~~~~criiDiS~SG  153 (207)
                      ++|+.|.+.+............+..   =...+.|+..-|..|+|++---+++.
T Consensus        35 v~W~~~~~~~~~~~~~~~~~~~~~~~gty~~~s~l~~~~~~~ytC~V~H~~~~~   88 (95)
T 3d2u_A           35 ITFIHYGDKVPEDSEPQCNPLLPTLDGTFHQGCYVAIFSNQNYTCRVTHGNWTV   88 (95)
T ss_dssp             EEEEEESSCCCTTCCCEECCCEECTTSCEEEEEEEEEETTSEEEEEEECSSCEE
T ss_pred             EEEEECCEECCCCCCCCCCCCEECCCCCEEEEEEEEECCCCCEEEEEEECCCCC
T ss_conf             999999998667651136774689899769999999689997899999688670


No 24 
>>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* (A:1-43,A:164-239,A:321-474)
Probab=20.76  E-value=55  Score=13.70  Aligned_cols=102  Identities=12%  Similarity=0.052  Sum_probs=57.9

Q ss_pred             CEEEEE-ECCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCCC
Q ss_conf             389999-7698789999999998764243675021025674777765136899579988989999874242045515778
Q gi|254780885|r   84 GYAVRI-VTSENERRKLADKLIWLANKDDLHLQDCRAYGRKITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQI  162 (207)
Q Consensus        84 GFav~l-~~t~~kR~kLA~qLtWlanr~~l~l~e~R~h~R~vPr~~~~~~~l~l~DG~~~~criiDiS~SGAAi~~~~rp  162 (207)
                      |+.+++ +..++--..+++.|.-++.++.-.+-..-.-..+...+..+ ..++++||..+.|..+= +..|+.-......
T Consensus        31 ~~~~~~~~~~~~~~~~l~~~l~~~le~~GV~i~~g~~V~~i~~~~g~v-~~V~l~dGe~i~AD~VV-~a~g~~~~~~~~~  108 (273)
T 2aqj_A           31 QANITLIESAAIPAHLVADFLKRWAVERGVNRVVDEVVDVRLNNRGYI-SNLLTKEGRTLEADLFI-DCSGMRGLLINQA  108 (273)
T ss_dssp             SCEEEEEECSSSCHHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCE-EEEEETTSCEECCSEEE-ECCGGGCCCCCCC
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCE-ECCCCCCCCEEEHHHHH-HCCCCCHHCCCCC
T ss_conf             997999968999999875675522100345555407998885578855-02235642044211110-0045521000212


Q ss_pred             CCCCEEEECCEEEEEEEEECCEEEE
Q ss_conf             9985589734669999993890899
Q gi|254780885|r  163 EMFSKVLFNDILGRVVRIFPGGIAI  187 (207)
Q Consensus       163 ~iGs~V~vG~~~grVVRh~~~GfaV  187 (207)
                      ........+...++.-.....++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~  133 (273)
T 2aqj_A          109 LKEPFIDMSDYVGRNKRAWVNNCVS  133 (273)
T ss_dssp             TCCCEEECTTTCEEESCSEETTEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             3444220000045555445344512


No 25 
>>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} (A:)
Probab=20.42  E-value=56  Score=13.66  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=23.8

Q ss_pred             CCCCCEEEEEECCCCC-EEEEEEEECCCCCEEEEEE
Q ss_conf             7679749999955443-7699999308983899997
Q gi|254780885|r   56 FLVGERSIVFVEKVGR-IEGKVVNFDSNRGYAVRIV   90 (207)
Q Consensus        56 ~~~Gervv~Yld~iGr-lEG~V~r~~~~~GFav~l~   90 (207)
                      ..+|++|.++...=|+ ..|+|+.+..+.-|.|.|.
T Consensus         9 ~~vG~~V~A~~s~Dg~~Y~a~I~~i~~~~~y~V~Fd   44 (156)
T 1ssf_A            9 SFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFD   44 (156)
T ss_dssp             CSTTCEEEECSSCSSEEEEEEEEECCTTTEEEEECT
T ss_pred             CCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEC
T ss_conf             778999999978999798689999868998999986


Done!