Query gi|254780885|ref|YP_003065298.1| hypothetical protein CLIBASIA_03910 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 207 No_of_seqs 61 out of 63 Neff 4.3 Searched_HMMs 33803 Date Wed Jun 1 18:55:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780885.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ywu_A Hypothetical protein P 98.8 7E-08 2.1E-12 68.2 9.7 102 7-110 24-130 (149) 2 >1ywu_A Hypothetical protein P 98.5 1E-06 3.1E-11 61.0 9.6 90 111-204 24-125 (149) 3 >2rde_A Uncharacterized protei 97.5 0.00039 1.2E-08 45.2 7.3 77 18-95 2-88 (114) 4 >3cnr_A Type IV fimbriae assem 96.9 0.0003 8.8E-09 45.9 1.3 64 15-80 3-71 (117) 5 >2gjg_A Hypothetical protein P 96.7 0.0053 1.6E-07 38.3 6.6 75 34-108 28-115 (125) 6 >2rde_A Uncharacterized protei 96.4 0.074 2.2E-06 31.3 13.6 68 133-201 10-98 (114) 7 >2gjg_A Hypothetical protein P 96.3 0.011 3.3E-07 36.3 6.1 61 136-196 23-102 (125) 8 >3cnr_A Type IV fimbriae assem 96.3 0.0064 1.9E-07 37.8 4.6 71 133-204 12-101 (117) 9 >3a24_A Alpha-galactosidase; g 63.3 11 0.00032 18.1 4.8 24 76-100 94-117 (270) 10 >2e6q_A Obscurin-like protein 37.9 20 0.00059 16.4 2.1 77 84-166 25-111 (112) 11 >2ltn_A PEA lectin, alpha chai 34.3 12 0.00036 17.7 0.5 16 184-199 40-55 (80) 12 >2eif_A IF-5A, protein (eukary 32.7 29 0.00087 15.4 2.2 11 34-44 26-36 (74) 13 >1iz6_A Initiation factor 5A; 31.6 30 0.00089 15.3 2.1 11 34-44 22-32 (70) 14 >1x6o_A Eukaryotic initiation 31.1 31 0.00092 15.2 2.1 12 142-153 47-58 (94) 15 >3cpf_A Eukaryotic translation 30.9 30 0.00088 15.4 2.0 11 34-44 22-32 (70) 16 >1khi_A HEX1; membrane sealing 29.8 34 0.001 15.0 2.1 11 142-152 51-61 (101) 17 >1bkb_A Translation initiation 29.5 34 0.001 15.0 2.1 11 34-44 24-34 (71) 18 >3er0_A Eukaryotic translation 26.2 42 0.0012 14.4 2.1 13 142-154 47-59 (94) 19 >1wdi_A Hypothetical protein T 26.0 39 0.0011 14.7 1.9 66 133-198 57-148 (345) 20 >2cgh_A Biotin ligase; 1.8A {M 25.8 44 0.0013 14.3 3.7 27 26-52 5-31 (47) 21 >3hks_A EIF-5A-2, eukaryotic t 25.8 42 0.0012 14.4 2.1 13 142-154 45-57 (92) 22 >2d73_A Alpha-glucosidase SUSB 21.0 36 0.0011 14.9 0.9 45 151-195 101-161 (309) 23 >3d2u_A UL18 protein; MHC clas 20.9 20 0.00059 16.4 -0.4 51 103-153 35-88 (95) 24 >2aqj_A Tryptophan halogenase, 20.8 55 0.0016 13.7 4.0 102 84-187 31-133 (273) 25 >1ssf_A Transformation related 20.4 56 0.0017 13.7 3.4 35 56-90 9-44 (156) No 1 >>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, PSI, protein structure initiative; NMR {Pseudomonas aeruginosa PAO1} (A:) Probab=98.77 E-value=7e-08 Score=68.17 Aligned_cols=102 Identities=13% Similarity=0.040 Sum_probs=79.7 Q ss_pred HHHHHHHCCCEEEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEECCCC-CCCCCEEEEEEC----CCCCEEEEEEEECC Q ss_conf 4322201062147999705799468983026999875685499942788-767974999995----54437699999308 Q gi|254780885|r 7 NLQFIDQRAFQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPM-FLVGERSIVFVE----KVGRIEGKVVNFDS 81 (207) Q Consensus 7 ~~~~~drR~f~RV~v~l~GR~ll~d~~E~~C~t~diSpgg~~l~~~~~~-~~~Gervv~Yld----~iGrlEG~V~r~~~ 81 (207) +.+..++|+|.|+++.+++.+..+ ...++|.+.|||.+|+++.++.+. ...|+.+.++|. ....++|+|++... T Consensus 24 ~~~~~~rR~~~Rv~~~~~~~i~~~-~~~~~~~~~DiS~~G~~i~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~Vv~~~~ 102 (149) T 1ywu_A 24 SDQHDERRRFHRIAFDADSEILQG-ERRWEVLLHDVSLHGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARD 102 (149) T ss_dssp CSCCCSSCCCCSSCCSCEEEEEET-TEEEEEEEEEECSSEEEEECSSCCCCCTTSEEEEEEESSSSCEEEEEEEEEEEET T ss_pred CCCCCCCCCCEEEEECCEEEEEEC-CEEEEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEECC T ss_conf 889542578766874033999989-9999999998147867997578767889956999998699856999999999649 Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHCCC Q ss_conf 98389999769878999999999876424 Q gi|254780885|r 82 NRGYAVRIVTSENERRKLADKLIWLANKD 110 (207) Q Consensus 82 ~~GFav~l~~t~~kR~kLA~qLtWlanr~ 110 (207) .+..+.|...+..-.....++.|.-..+ T Consensus 103 -~~~G~~F~~~~~~~~~~l~~~i~~~~~~ 130 (149) T 1ywu_A 103 -GLLGFECQHIDLDSISHLRRLVELNLGD 130 (149) T ss_dssp -TEEEEEEEEECHHHHHHHHHHHHHHTCC T ss_pred -CEEEEEEEEECHHHHHHHHHHHHHHCCC T ss_conf -9899999752888999999999876799 No 2 >>1ywu_A Hypothetical protein PA4608; PAT7, beta barrel, PILZ domain, structural genomics, PSI, protein structure initiative; NMR {Pseudomonas aeruginosa PAO1} (A:) Probab=98.51 E-value=1e-06 Score=61.00 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=66.2 Q ss_pred CCCCCHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCCCC--CCCEEEE---------CCEEEEEEE Q ss_conf 36750210256747777651368995799889899998742420455157789--9855897---------346699999 Q gi|254780885|r 111 DLHLQDCRAYGRKITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQIE--MFSKVLF---------NDILGRVVR 179 (207) Q Consensus 111 ~l~l~e~R~h~R~vPr~~~~~~~l~l~DG~~~~criiDiS~SGAAi~~~~rp~--iGs~V~v---------G~~~grVVR 179 (207) .....+.|+|.|+.-..+ .++. .+|..++|.+.|+|.+|+++.++..++ .|..+.+ ..+.|+|++ T Consensus 24 ~~~~~~rR~~~Rv~~~~~---~~i~-~~~~~~~~~~~DiS~~G~~i~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~Vv~ 99 (149) T 1ywu_A 24 SDQHDERRRFHRIAFDAD---SEIL-QGERRWEVLLHDVSLHGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAW 99 (149) T ss_dssp CSCCCSSCCCCSSCCSCE---EEEE-ETTEEEEEEEEEECSSEEEEECSSCCCCCTTSEEEEEEESSSSCEEEEEEEEEE T ss_pred CCCCCCCCCCEEEEECCE---EEEE-ECCEEEEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEE T ss_conf 889542578766874033---9999-899999999998147867997578767889956999998699856999999999 Q ss_pred EECCEEEEEECCC-CCCCHHHHHHHH Q ss_conf 9389089997167-784236778753 Q gi|254780885|r 180 IFPGGIAIEFSSV-QESNIAFKSLIN 204 (207) Q Consensus 180 h~~~GfaVeF~~~-q~~~~~~~~~~~ 204 (207) ..++++|++|.++ .+.......++. T Consensus 100 ~~~~~~G~~F~~~~~~~~~~l~~~i~ 125 (149) T 1ywu_A 100 ARDGLLGFECQHIDLDSISHLRRLVE 125 (149) T ss_dssp EETTEEEEEEEEECHHHHHHHHHHHH T ss_pred ECCCEEEEEEEEECHHHHHHHHHHHH T ss_conf 64998999997528889999999998 No 3 >>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.92A {Vibrio cholerae O395} (A:138-251) Probab=97.52 E-value=0.00039 Score=45.24 Aligned_cols=77 Identities=21% Similarity=0.359 Sum_probs=40.5 Q ss_pred EEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEECC--CCCCCCCEEEEEE--CCCC-----CEEEEEEEE-CCCCCEEE Q ss_conf 479997057994689830269998756854999427--8876797499999--5544-----376999993-08983899 Q gi|254780885|r 18 RVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDV--PMFLVGERSIVFV--EKVG-----RIEGKVVNF-DSNRGYAV 87 (207) Q Consensus 18 RV~v~l~GR~ll~d~~E~~C~t~diSpgg~~l~~~~--~~~~~Gervv~Yl--d~iG-----rlEG~V~r~-~~~~GFav 87 (207) ||++++++..... ...+.|.+.|+|.+|.++..+. +-..+|+.|.+.+ ...| .+.|+|.++ ..+.+..+ T Consensus 2 Rv~~~lp~~i~~~-~~~~~g~i~DiS~gG~~i~~~~~~~~~~~g~~i~l~~~l~~~~~~~~~~l~g~V~~v~~~~~~~~~ 80 (114) T 2rde_A 2 RFELNLAGKVLFD-EHRGDCELRDLSRSGCRFITPPLGKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRSLHHARY 80 (114) T ss_dssp BEEEEEEEEEEET-TEEEEEEEEEECSSEEEEEECTTSCCCCTTCEEEEEEBSSTTSSCBCSCEEEEEEEEEECSSCEEE T ss_pred EEEEEEEEEEEEC-CEEEEEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCEEE T ss_conf 3897789999989-999999998756477789957867655899889999997459982689999999998976896899 Q ss_pred EEECCHHH Q ss_conf 99769878 Q gi|254780885|r 88 RIVTSENE 95 (207) Q Consensus 88 ~l~~t~~k 95 (207) -++..+-. T Consensus 81 GvqF~~~~ 88 (114) T 2rde_A 81 GLEFNEEG 88 (114) T ss_dssp EEEECHHH T ss_pred EEEECCCC T ss_conf 99988999 No 4 >>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A (A:) Probab=96.90 E-value=0.0003 Score=45.95 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=37.6 Q ss_pred CCEEEEEEEEEEEEECCCCCEEEEEEEECCCCEEEEECCCCCCCCCEEEEEE--CCCC---CEEEEEEEEC Q ss_conf 6214799970579946898302699987568549994278876797499999--5544---3769999930 Q gi|254780885|r 15 AFQRVKVDLKGRFLLFDGTEYNCIVREISPGGLCIVCDVPMFLVGERSIVFV--EKVG---RIEGKVVNFD 80 (207) Q Consensus 15 ~f~RV~v~l~GR~ll~d~~E~~C~t~diSpgg~~l~~~~~~~~~Gervv~Yl--d~iG---rlEG~V~r~~ 80 (207) +|.|+++.+.-.|.-. ...|.|.+.|+|.||+.+.++.+ ..+|+++.+-| ...+ .++|+|+.+. T Consensus 3 a~pR~p~~l~v~~~~~-~~~~~~~~~diS~gGl~i~t~~~-l~~G~~v~l~~~lp~~~~~i~~~g~V~w~~ 71 (117) T 3cnr_A 3 AXNARQGILSLALKDK-PALYSAYXPFVKGGGIFVPTPKR-YXLGDEVFLLLTLPDSSERLPVAGKVIWTT 71 (117) T ss_dssp ------CCEEEECCSH-HHHHHHEETTBTTCEEEEECCSC-CCTTCEEEEEEECTTCSCEEEEEEEEEEEE T ss_pred CCCCCCCEEEEEECCH-HHHHHHHCCCCCCCEEEEECCCC-CCCCCEEEEEEEECCCCCEEEEEEEEEEEC T ss_conf 7888887699998999-99999841206797589716997-789999999999537882688889999966 No 5 >>2gjg_A Hypothetical protein PP4397; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Pseudomonas putida KT2440} (A:124-248) Probab=96.74 E-value=0.0053 Score=38.32 Aligned_cols=75 Identities=13% Similarity=0.053 Sum_probs=33.2 Q ss_pred CEEEEEEEECCCCEEEEECCCCC---CCCCEEE-EEECCCC---CEEEEEEEECCC---CC--EEEEE-ECCHHHHHHHH Q ss_conf 30269998756854999427887---6797499-9995544---376999993089---83--89999-76987899999 Q gi|254780885|r 34 EYNCIVREISPGGLCIVCDVPMF---LVGERSI-VFVEKVG---RIEGKVVNFDSN---RG--YAVRI-VTSENERRKLA 100 (207) Q Consensus 34 E~~C~t~diSpgg~~l~~~~~~~---~~Gervv-~Yld~iG---rlEG~V~r~~~~---~G--Fav~l-~~t~~kR~kLA 100 (207) -+.|++.|+|.||+++.++.+.+ .++..+. +-++--+ .+.|+|.++... .. +.++| +.++..+++|. T Consensus 28 ~~~~~~~DIS~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~G~~F~~l~~~~~~~L~ 107 (125) T 2gjg_A 28 AXRGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNPLGLVDTXVELRHLHYEERINTTFAGVRFHNLSGQAQRKIE 107 (125) T ss_dssp CEEEEEEEECSSEEEEEEESCCGGGCCTTCEEEEEEECTTTCEEEEEEEEEEEEEEGGGTEEEEEEEEESCCHHHHHHHH T ss_pred EEEEEEEEECCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEECCCHHHHHHHH T ss_conf 67789986468854899557656566464399986754888616788999999963788708999999059999999999 Q ss_pred HHHHHHHC Q ss_conf 99998764 Q gi|254780885|r 101 DKLIWLAN 108 (207) Q Consensus 101 ~qLtWlan 108 (207) .-+.++.. T Consensus 108 ~~I~~~qr 115 (125) T 2gjg_A 108 SFVYQLQR 115 (125) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 6 >>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.92A {Vibrio cholerae O395} (A:138-251) Probab=96.39 E-value=0.074 Score=31.28 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=50.9 Q ss_pred EEEECCCCEEEEEEEEEECCCEEEECCC---CCCCCCEEEE-------C-----CEEEEEEEEECCE----EEEEECCCC Q ss_conf 8995799889899998742420455157---7899855897-------3-----4669999993890----899971677 Q gi|254780885|r 133 QLVLNDNTKHSCKVIDISESGVSVSVDL---QIEMFSKVLF-------N-----DILGRVVRIFPGG----IAIEFSSVQ 193 (207) Q Consensus 133 ~l~l~DG~~~~criiDiS~SGAAi~~~~---rp~iGs~V~v-------G-----~~~grVVRh~~~G----faVeF~~~q 193 (207) +++ .+|..+.|.+.|+|.+|+.+..+. .+++|..|.+ | .+.|.|++....+ ||++|.++. T Consensus 10 ~i~-~~~~~~~g~i~DiS~gG~~i~~~~~~~~~~~g~~i~l~~~l~~~~~~~~~~l~g~V~~v~~~~~~~~~GvqF~~~~ 88 (114) T 2rde_A 10 KVL-FDEHRGDCELRDLSRSGCRFITPPLGKTYQVGDLVALEIFSDLRGTKTFPPLTGKICNLQRSLHHARYGLEFNEEG 88 (114) T ss_dssp EEE-ETTEEEEEEEEEECSSEEEEEECTTSCCCCTTCEEEEEEBSSTTSSCBCSCEEEEEEEEEECSSCEEEEEEECHHH T ss_pred EEE-ECCEEEEEEEEEECCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEEEEEECCCCEEEEEEECCCC T ss_conf 999-8999999999875647778995786765589988999999745998268999999999897689689999988999 Q ss_pred CC--CHHHHH Q ss_conf 84--236778 Q gi|254780885|r 194 ES--NIAFKS 201 (207) Q Consensus 194 ~~--~~~~~~ 201 (207) +. +.++.. T Consensus 89 ~~~~~~L~~~ 98 (114) T 2rde_A 89 RNNAKNLLAQ 98 (114) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 8999999998 No 7 >>2gjg_A Hypothetical protein PP4397; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Pseudomonas putida KT2440} (A:124-248) Probab=96.32 E-value=0.011 Score=36.29 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=44.5 Q ss_pred ECCCCEEEEEEEEEECCCEEEECCCCCCCCC----EE---EE--C----CEEEEEEEEECC------EEEEEECCCCCCC Q ss_conf 5799889899998742420455157789985----58---97--3----466999999389------0899971677842 Q gi|254780885|r 136 LNDNTKHSCKVIDISESGVSVSVDLQIEMFS----KV---LF--N----DILGRVVRIFPG------GIAIEFSSVQESN 196 (207) Q Consensus 136 l~DG~~~~criiDiS~SGAAi~~~~rp~iGs----~V---~v--G----~~~grVVRh~~~------GfaVeF~~~q~~~ 196 (207) .++|..+.|++.|+|.+|+++.++...+.+. .+ .+ + .+.|+|++.... -+|++|..+-..+ T Consensus 23 ~~~~~~~~~~~~DIS~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~G~~F~~l~~~~ 102 (125) T 2gjg_A 23 LKGNGAXRGKLLDISATGCKLRFEGNVEDRLQLGQVYERFKAGNPLGLVDTXVELRHLHYEERINTTFAGVRFHNLSGQA 102 (125) T ss_dssp CCSSSCEEEEEEEECSSEEEEEEESCCGGGCCTTCEEEEEEECTTTCEEEEEEEEEEEEEEGGGTEEEEEEEEESCCHHH T ss_pred CCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEECCCHHH T ss_conf 78883677899864688548995576565664643999867548886167889999999637887089999990599999 No 8 >>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A (A:) Probab=96.25 E-value=0.0064 Score=37.81 Aligned_cols=71 Identities=20% Similarity=0.339 Sum_probs=54.4 Q ss_pred EEEE-CCCCEEEEEEEEEECCCEEEECCCCCCCCCEEEE-----C-----CEEEEEEEEEC--------CEEEEEECCCC Q ss_conf 8995-7998898999987424204551577899855897-----3-----46699999938--------90899971677 Q gi|254780885|r 133 QLVL-NDNTKHSCKVIDISESGVSVSVDLQIEMFSKVLF-----N-----DILGRVVRIFP--------GGIAIEFSSVQ 193 (207) Q Consensus 133 ~l~l-~DG~~~~criiDiS~SGAAi~~~~rp~iGs~V~v-----G-----~~~grVVRh~~--------~GfaVeF~~~q 193 (207) .+++ .++..+.|...|+|..|..+.++..+++|+.|.+ + .+.|+|++.-+ .|+||+|...- T Consensus 12 ~v~~~~~~~~~~~~~~diS~gGl~i~t~~~l~~G~~v~l~~~lp~~~~~i~~~g~V~w~~~~~~~~~~~~g~Gv~F~~~~ 91 (117) T 3cnr_A 12 SLALKDKPALYSAYXPFVKGGGIFVPTPKRYXLGDEVFLLLTLPDSSERLPVAGKVIWTTPAGAQGNRAAGIGVQFPDGP 91 (117) T ss_dssp EEECCSHHHHHHHEETTBTTCEEEEECCSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC------CCEEEEECCSSH T ss_pred EEEECCHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEECCCC T ss_conf 99989999999984120679758971699778999999999953788268888999996678777888872799966688 Q ss_pred CCCHHHHHHHH Q ss_conf 84236778753 Q gi|254780885|r 194 ESNIAFKSLIN 204 (207) Q Consensus 194 ~~~~~~~~~~~ 204 (207) +.+-+ +++|. T Consensus 92 ~~~~~-r~~I~ 101 (117) T 3cnr_A 92 EGEAV-RNKIE 101 (117) T ss_dssp HHHHH-HHHHH T ss_pred CCHHH-HHHHH T ss_conf 34789-99999 No 9 >>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} (A:1-270) Probab=63.30 E-value=11 Score=18.08 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=13.7 Q ss_pred EEEECCCCCEEEEEECCHHHHHHHH Q ss_conf 9993089838999976987899999 Q gi|254780885|r 76 VVNFDSNRGYAVRIVTSENERRKLA 100 (207) Q Consensus 76 V~r~~~~~GFav~l~~t~~kR~kLA 100 (207) +.|+..+ |.|.++....++--++. T Consensus 94 ~fRaydD-GvAfRy~~p~~~~~~I~ 117 (270) T 3a24_A 94 EFRAYND-GIAYRFVNQGKKPFRVV 117 (270) T ss_dssp EEEEETT-EEEEEEEECCCSCEEEE T ss_pred EEEECCC-CEEEEEEECCCCCEEEE T ss_conf 9999269-87999981798868981 No 10 >>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=37.94 E-value=20 Score=16.41 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=45.9 Q ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHCCC-----CCCCCCCCCCEEEEE-----ECCCCEEEEEEEEEECCC Q ss_conf 3899997698789999999998764243675021025-----674777765136899-----579988989999874242 Q gi|254780885|r 84 GYAVRIVTSENERRKLADKLIWLANKDDLHLQDCRAY-----GRKITRDREVDAQLV-----LNDNTKHSCKVIDISESG 153 (207) Q Consensus 84 GFav~l~~t~~kR~kLA~qLtWlanr~~l~l~e~R~h-----~R~vPr~~~~~~~l~-----l~DG~~~~criiDiS~SG 153 (207) -..+...+++. -+++|+-|...+...++..+ .|+.-.......+|+ .+|...|.|...+---+. T Consensus 25 ~v~l~C~~~~~------p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~~~~ 98 (112) T 2e6q_A 25 DAVFSLDLSTI------IQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDS 98 (112) T ss_dssp EEEEEEEESSC------CCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEETTEEEE T ss_pred EEEEEEEECCC------EEEEEEECCEECCCCCCCCCEEEECCCEEEECCCCEEEEEECCCCHHHCCEEEEEEECCEEEE T ss_conf 79999994688------088998899896577773100110252356406966688879899889978999998995889 Q ss_pred EEEECCCCCCCCC Q ss_conf 0455157789985 Q gi|254780885|r 154 VSVSVDLQIEMFS 166 (207) Q Consensus 154 AAi~~~~rp~iGs 166 (207) +-|.....|.+-+ T Consensus 99 ~~L~V~~~p~~ps 111 (112) T 2e6q_A 99 AALTIQESSGPSS 111 (112) T ss_dssp EEEEEECSSCSCC T ss_pred EEEEEECCCCCCC T ss_conf 9999925796768 No 11 >>2ltn_A PEA lectin, alpha chain; 1.70A {Pisum sativum} (A:76-155) Probab=34.27 E-value=12 Score=17.72 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=12.1 Q ss_pred EEEEEECCCCCCCHHH Q ss_conf 0899971677842367 Q gi|254780885|r 184 GIAIEFSSVQESNIAF 199 (207) Q Consensus 184 GfaVeF~~~q~~~~~~ 199 (207) =|||||.+.|+.+.-. T Consensus 40 ~vAVEFDT~~n~~~~d 55 (80) T 2ltn_A 40 TVAVEFDTFYNAAWDP 55 (80) T ss_dssp CEEEEEECSCCTTTSC T ss_pred EEEEEEECCCCCCCCC T ss_conf 4999997400466599 No 12 >>2eif_A IF-5A, protein (eukaryotic translation initiation factor 5A); EIF-5A, OB-fold, structural genomics; 1.80A {Methanocaldococcus jannaschii DSM2661} (A:1-74) Probab=32.70 E-value=29 Score=15.39 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=5.9 Q ss_pred CEEEEEEEECC Q ss_conf 30269998756 Q gi|254780885|r 34 EYNCIVREISP 44 (207) Q Consensus 34 E~~C~t~diSp 44 (207) ++||++++||. T Consensus 26 g~PCkIv~ist 36 (74) T 2eif_A 26 GVPCEIVDISV 36 (74) T ss_dssp TEEEEEEEEEE T ss_pred CEEEEEEEEEE T ss_conf 99899999998 No 13 >>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii OT3} (A:1-70) Probab=31.61 E-value=30 Score=15.32 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=6.7 Q ss_pred CEEEEEEEECC Q ss_conf 30269998756 Q gi|254780885|r 34 EYNCIVREISP 44 (207) Q Consensus 34 E~~C~t~diSp 44 (207) ++||++++||. T Consensus 22 g~PCkIv~ist 32 (70) T 1iz6_A 22 DEPCRIVNITV 32 (70) T ss_dssp TEEEEEEEEEE T ss_pred CEEEEEEEEEE T ss_conf 99999999998 No 14 >>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI, protein structure initiative; 1.60A {Leishmania braziliensis} (A:1-94) Probab=31.08 E-value=31 Score=15.23 Aligned_cols=12 Identities=58% Similarity=0.888 Sum_probs=7.6 Q ss_pred EEEEEEEEECCC Q ss_conf 989999874242 Q gi|254780885|r 142 HSCKVIDISESG 153 (207) Q Consensus 142 ~~criiDiS~SG 153 (207) .||+|+++|.|- T Consensus 47 ~PCkIv~istSk 58 (94) T 1x6o_A 47 RPCKVIDLSVSK 58 (94) T ss_dssp EEEEEEEEEECC T ss_pred EEEEEEEEEEEC T ss_conf 899998999616 No 15 >>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, acetylation, alternative splicing; 2.50A {Homo sapiens} (A:1-70) Probab=30.93 E-value=30 Score=15.36 Aligned_cols=11 Identities=27% Similarity=0.467 Sum_probs=6.9 Q ss_pred CEEEEEEEECC Q ss_conf 30269998756 Q gi|254780885|r 34 EYNCIVREISP 44 (207) Q Consensus 34 E~~C~t~diSp 44 (207) ++||++++||. T Consensus 22 g~PCkIv~ist 32 (70) T 3cpf_A 22 GRPCKIVEMST 32 (70) T ss_dssp TEEEEEEEEEE T ss_pred CEEEEEEEEEE T ss_conf 99999998999 No 16 >>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} (A:1-101) Probab=29.82 E-value=34 Score=15.02 Aligned_cols=11 Identities=55% Similarity=0.890 Sum_probs=9.1 Q ss_pred EEEEEEEEECC Q ss_conf 98999987424 Q gi|254780885|r 142 HSCKVIDISES 152 (207) Q Consensus 142 ~~criiDiS~S 152 (207) .||+|+++|.| T Consensus 51 ~PCkIv~istS 61 (101) T 1khi_A 51 RPCQVIRISTS 61 (101) T ss_dssp EEEEEEEEEEC T ss_pred CCEEEEEEECC T ss_conf 53599998736 No 17 >>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} (A:1-71) Probab=29.48 E-value=34 Score=15.02 Aligned_cols=11 Identities=36% Similarity=0.404 Sum_probs=5.6 Q ss_pred CEEEEEEEECC Q ss_conf 30269998756 Q gi|254780885|r 34 EYNCIVREISP 44 (207) Q Consensus 34 E~~C~t~diSp 44 (207) ++||.+++||. T Consensus 24 g~PCkIv~ist 34 (71) T 1bkb_A 24 GEPCRVVEIEK 34 (71) T ss_dssp TEEEEEEEEEE T ss_pred CEEEEEEEEEE T ss_conf 99999999999 No 18 >>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} (A:1-94) Probab=26.16 E-value=42 Score=14.44 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=7.7 Q ss_pred EEEEEEEEECCCE Q ss_conf 9899998742420 Q gi|254780885|r 142 HSCKVIDISESGV 154 (207) Q Consensus 142 ~~criiDiS~SGA 154 (207) .||+|+++|.|.. T Consensus 47 ~PCKIveistSk~ 59 (94) T 3er0_A 47 RPCKIVDMSTSKT 59 (94) T ss_dssp EEEEEEEEEEECC T ss_pred EEEEEEEEEEECC T ss_conf 7899999885079 No 19 >>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} (A:) Probab=26.04 E-value=39 Score=14.67 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=38.8 Q ss_pred EEEECCCCEEEEEEEEEECCCEEEEC-----------------CCCCCCCCEEEECC---------EEEEEEEEECCEEE Q ss_conf 89957998898999987424204551-----------------57789985589734---------66999999389089 Q gi|254780885|r 133 QLVLNDNTKHSCKVIDISESGVSVSV-----------------DLQIEMFSKVLFND---------ILGRVVRIFPGGIA 186 (207) Q Consensus 133 ~l~l~DG~~~~criiDiS~SGAAi~~-----------------~~rp~iGs~V~vG~---------~~grVVRh~~~Gfa 186 (207) -|.+.|-.++|+|+.--..+|+.++. ..++.+|+.+.++. ..++|....+.|+. T Consensus 57 lLV~NdTkVipARL~g~k~tg~~iEilll~~l~~~~w~~lv~p~kk~k~G~~l~~~~~~~~~~~~~l~a~v~~~~~~~~~ 136 (345) T 1wdi_A 57 VLVFNESKVIPARLLARKPTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVR 136 (345) T ss_dssp EEEEEEEEECCEEEEEECTTSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC--- T ss_pred EEEEECCEEEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCE T ss_conf 99998998978899977068970899984145761354212105678989889963775322126737999997068727 Q ss_pred EEECCCCCCCHH Q ss_conf 997167784236 Q gi|254780885|r 187 IEFSSVQESNIA 198 (207) Q Consensus 187 VeF~~~q~~~~~ 198 (207) +.|.+..-.+.+ T Consensus 137 ~~~~~~~~~~~l 148 (345) T 1wdi_A 137 LLRFQGDLVAHL 148 (345) T ss_dssp -------CCEEE T ss_pred EEEECCCHHHHH T ss_conf 986123168898 No 20 >>2cgh_A Biotin ligase; 1.8A {Mycobacterium tuberculosis} (A:222-268) Probab=25.83 E-value=44 Score=14.31 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=16.1 Q ss_pred EEEECCCCCEEEEEEEECCCCEEEEEC Q ss_conf 799468983026999875685499942 Q gi|254780885|r 26 RFLLFDGTEYNCIVREISPGGLCIVCD 52 (207) Q Consensus 26 R~ll~d~~E~~C~t~diSpgg~~l~~~ 52 (207) |..+|+..++.....|+.+.|..++-. T Consensus 5 Rv~lpgg~~l~G~A~diD~~G~LvV~~ 31 (47) T 2cgh_A 5 RVELPGGQDVVGIARDIDDQGRLCLDV 31 (47) T ss_dssp EEEETTTEEEEEEEEEECTTSCEEEEE T ss_pred EEEECCCCEEEEEEEEECCCCEEEEEE T ss_conf 999789949999999999898099999 No 21 >>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} (A:1-92) Probab=25.78 E-value=42 Score=14.43 Aligned_cols=13 Identities=38% Similarity=0.800 Sum_probs=7.8 Q ss_pred EEEEEEEEECCCE Q ss_conf 9899998742420 Q gi|254780885|r 142 HSCKVIDISESGV 154 (207) Q Consensus 142 ~~criiDiS~SGA 154 (207) .||+|+++|.|.. T Consensus 45 ~PCkIv~istSk~ 57 (92) T 3hks_A 45 RPCKVVEVSTSKT 57 (92) T ss_dssp EEEEEEEEEEECS T ss_pred EEEEEEEEEEECC T ss_conf 9899999986568 No 22 >>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* (A:1-309) Probab=21.04 E-value=36 Score=14.85 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=27.7 Q ss_pred CCCEEEECCCCCCCCCEEEE---------------CC-EEEEEEEEECCEEEEEECCCCCC Q ss_conf 24204551577899855897---------------34-66999999389089997167784 Q gi|254780885|r 151 ESGVSVSVDLQIEMFSKVLF---------------ND-ILGRVVRIFPGGIAIEFSSVQES 195 (207) Q Consensus 151 ~SGAAi~~~~rp~iGs~V~v---------------G~-~~grVVRh~~~GfaVeF~~~q~~ 195 (207) .+-..+.-..+|+.|..-.+ |. ...-++|-++||+|.+|--+++. T Consensus 101 ~~~~~vde~~~~~~GK~~~v~d~yNEl~l~f~~~~~~~~l~l~fRvynDGVAfRY~lp~~~ 161 (309) T 2d73_A 101 TQTATFDETWQPVWGEEKEIRNHYNELAVTLYQPMNDRSIVIRFRLFNDGLGFRYEFPQQK 161 (309) T ss_dssp EEEEEEEEEECCSSSSSSCEEEEEEEEEEEEEEGGGTEEEEEEEEEETTEEEEEEEECCBT T ss_pred EEEEEECCEECCCCCEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCEEEEEEECCCC T ss_conf 7863532187378871115731024899999715899359999999069889999947878 No 23 >>3d2u_A UL18 protein; MHC class I homolog, disease mutation, glycation, glycoprotein, immune response, immunoglobulin domain, MHC I, pyrrolidone carboxylic acid; HET: NAG MAN BMA FUC; 2.21A {Human herpesvirus 5} (A:187-281) Probab=20.86 E-value=20 Score=16.44 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=27.9 Q ss_pred HHHHHCCCCCCCCHHCCCCCCCCCC---CCCEEEEEECCCCEEEEEEEEEECCC Q ss_conf 9987642436750210256747777---65136899579988989999874242 Q gi|254780885|r 103 LIWLANKDDLHLQDCRAYGRKITRD---REVDAQLVLNDNTKHSCKVIDISESG 153 (207) Q Consensus 103 LtWlanr~~l~l~e~R~h~R~vPr~---~~~~~~l~l~DG~~~~criiDiS~SG 153 (207) ++|+.|.+.+............+.. =...+.|+..-|..|+|++---+++. T Consensus 35 v~W~~~~~~~~~~~~~~~~~~~~~~~gty~~~s~l~~~~~~~ytC~V~H~~~~~ 88 (95) T 3d2u_A 35 ITFIHYGDKVPEDSEPQCNPLLPTLDGTFHQGCYVAIFSNQNYTCRVTHGNWTV 88 (95) T ss_dssp EEEEEESSCCCTTCCCEECCCEECTTSCEEEEEEEEEETTSEEEEEEECSSCEE T ss_pred EEEEECCEECCCCCCCCCCCCEECCCCCEEEEEEEEECCCCCEEEEEEECCCCC T ss_conf 999999998667651136774689899769999999689997899999688670 No 24 >>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* (A:1-43,A:164-239,A:321-474) Probab=20.76 E-value=55 Score=13.70 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=57.9 Q ss_pred CEEEEE-ECCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCCC Q ss_conf 389999-7698789999999998764243675021025674777765136899579988989999874242045515778 Q gi|254780885|r 84 GYAVRI-VTSENERRKLADKLIWLANKDDLHLQDCRAYGRKITRDREVDAQLVLNDNTKHSCKVIDISESGVSVSVDLQI 162 (207) Q Consensus 84 GFav~l-~~t~~kR~kLA~qLtWlanr~~l~l~e~R~h~R~vPr~~~~~~~l~l~DG~~~~criiDiS~SGAAi~~~~rp 162 (207) |+.+++ +..++--..+++.|.-++.++.-.+-..-.-..+...+..+ ..++++||..+.|..+= +..|+.-...... T Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~le~~GV~i~~g~~V~~i~~~~g~v-~~V~l~dGe~i~AD~VV-~a~g~~~~~~~~~ 108 (273) T 2aqj_A 31 QANITLIESAAIPAHLVADFLKRWAVERGVNRVVDEVVDVRLNNRGYI-SNLLTKEGRTLEADLFI-DCSGMRGLLINQA 108 (273) T ss_dssp SCEEEEEECSSSCHHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCE-EEEEETTSCEECCSEEE-ECCGGGCCCCCCC T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCE-ECCCCCCCCEEEHHHHH-HCCCCCHHCCCCC T ss_conf 997999968999999875675522100345555407998885578855-02235642044211110-0045521000212 Q ss_pred CCCCEEEECCEEEEEEEEECCEEEE Q ss_conf 9985589734669999993890899 Q gi|254780885|r 163 EMFSKVLFNDILGRVVRIFPGGIAI 187 (207) Q Consensus 163 ~iGs~V~vG~~~grVVRh~~~GfaV 187 (207) ........+...++.-.....++.. T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (273) T 2aqj_A 109 LKEPFIDMSDYVGRNKRAWVNNCVS 133 (273) T ss_dssp TCCCEEECTTTCEEESCSEETTEEE T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 3444220000045555445344512 No 25 >>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} (A:) Probab=20.42 E-value=56 Score=13.66 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=23.8 Q ss_pred CCCCCEEEEEECCCCC-EEEEEEEECCCCCEEEEEE Q ss_conf 7679749999955443-7699999308983899997 Q gi|254780885|r 56 FLVGERSIVFVEKVGR-IEGKVVNFDSNRGYAVRIV 90 (207) Q Consensus 56 ~~~Gervv~Yld~iGr-lEG~V~r~~~~~GFav~l~ 90 (207) ..+|++|.++...=|+ ..|+|+.+..+.-|.|.|. T Consensus 9 ~~vG~~V~A~~s~Dg~~Y~a~I~~i~~~~~y~V~Fd 44 (156) T 1ssf_A 9 SFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFD 44 (156) T ss_dssp CSTTCEEEECSSCSSEEEEEEEEECCTTTEEEEECT T ss_pred CCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEC T ss_conf 778999999978999798689999868998999986 Done!