Query gi|254780886|ref|YP_003065299.1| hypothetical protein CLIBASIA_03915 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 41
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 18:33:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780886.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1gwy_A Sticholysin II; cytoly 10.6 47 0.0014 16.6 -0.7 16 14-29 97-112 (175)
2 >2v5c_A O-GLCNACASE NAGJ; glyc 10.3 52 0.0015 16.4 -0.6 17 13-29 3-19 (47)
3 >1x5w_A Zinc finger protein 64 8.3 89 0.0026 15.3 -0.0 17 18-34 12-28 (33)
4 >1iaz_A Equinatoxin II; beta-s 8.0 65 0.0019 15.9 -0.8 15 15-29 100-114 (179)
5 >1v0d_A DNA fragmentation fact 7.8 63 0.0019 16.0 -1.0 10 24-33 116-125 (187)
6 >1vki_A Hypothetical protein A 5.1 1.4E+02 0.0042 14.4 -0.4 14 20-33 2-15 (181)
7 >1yt5_A Inorganic polyphosphat 4.6 3.5E+02 0.01 12.7 1.5 19 3-21 70-88 (162)
8 >3gqn_A Preneck appendage prot 4.1 1.8E+02 0.0052 14.0 -0.5 28 11-38 98-125 (138)
9 >1vlo_A Aminomethyltransferase 3.2 2E+02 0.0058 13.8 -0.9 17 16-32 33-49 (77)
10 >2i2c_A Probable inorganic pol 3.0 5E+02 0.015 12.0 1.4 19 3-21 56-74 (157)
No 1
>>1gwy_A Sticholysin II; cytolysin, pore-forming toxin, hemolysis, cnidocyst; 1.71A {Stoichactis helianthus} (A:)
Probab=10.55 E-value=47 Score=16.56 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=12.6
Q ss_pred HHHHHHCCCCEEEHHH
Q ss_conf 0122120311012776
Q gi|254780886|r 14 STAIMSSCSYSWNLKH 29 (41)
Q Consensus 14 staimsscsyswnlkh 29 (41)
.-+||-|+.|.|||-.
T Consensus 97 ~LaIMfSvPyDynlYs 112 (175)
T 1gwy_A 97 TLGVMFSVPFDYNWYS 112 (175)
T ss_dssp EEEEEEEECSCCSSCC
T ss_pred EEEEEEECCCCCCCCC
T ss_conf 5789996133554424
No 2
>>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil, family 84 glycoside hydrolase, carbohydrate binding module; 2.10A {Clostridium perfringens} PDB: 2cbj_A* 2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* (A:405-451)
Probab=10.31 E-value=52 Score=16.38 Aligned_cols=17 Identities=35% Similarity=0.815 Sum_probs=13.2
Q ss_pred HHHHHHHCCCCEEEHHH
Q ss_conf 00122120311012776
Q gi|254780886|r 13 SSTAIMSSCSYSWNLKH 29 (41)
Q Consensus 13 sstaimsscsyswnlkh 29 (41)
|-.++.+.-.|+||.+.
T Consensus 3 SKvalf~~Ady~WN~~~ 19 (47)
T 2v5c_A 3 SKISIHTAADYSWNMDN 19 (47)
T ss_dssp HHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHCCHHH
T ss_conf 68999888987469433
No 3
>>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-33)
Probab=8.26 E-value=89 Score=15.33 Aligned_cols=17 Identities=47% Similarity=0.608 Sum_probs=12.8
Q ss_pred HHCCCCEEEHHHHEEEE
Q ss_conf 12031101277630110
Q gi|254780886|r 18 MSSCSYSWNLKHAIRKI 34 (41)
Q Consensus 18 msscsyswnlkhairki 34 (41)
-+.||||-.-|-|.|--
T Consensus 12 C~~CsYSCsskAALrvH 28 (33)
T 1x5w_A 12 CSECSYSCSSKAALRIH 28 (33)
T ss_dssp CSSSSCEESSHHHHHHH
T ss_pred CCCCCCEECCHHHHHHH
T ss_conf 89998872988999998
No 4
>>1iaz_A Equinatoxin II; beta-sandwich; 1.90A {Actinia equina} (A:)
Probab=7.97 E-value=65 Score=15.93 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=12.0
Q ss_pred HHHHHCCCCEEEHHH
Q ss_conf 122120311012776
Q gi|254780886|r 15 TAIMSSCSYSWNLKH 29 (41)
Q Consensus 15 taimsscsyswnlkh 29 (41)
-+||-|+.|.|||--
T Consensus 100 LaIMfSvPyDynlYs 114 (179)
T 1iaz_A 100 LAVLFSVPYDYNWYS 114 (179)
T ss_dssp EEEEEEECSCTTTCC
T ss_pred EEEEEECCCCCCCCC
T ss_conf 999993464553202
No 5
>>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} (A:143-329)
Probab=7.75 E-value=63 Score=16.00 Aligned_cols=10 Identities=60% Similarity=1.225 Sum_probs=7.9
Q ss_pred EEEHHHHEEE
Q ss_conf 0127763011
Q gi|254780886|r 24 SWNLKHAIRK 33 (41)
Q Consensus 24 swnlkhairk 33 (41)
.|||.|-|.|
T Consensus 116 tWNLDH~IEk 125 (187)
T 1v0d_A 116 TWNLDHIIEK 125 (187)
T ss_dssp TSEEEESSCT
T ss_pred ECCCCCEEEE
T ss_conf 3167205531
No 6
>>1vki_A Hypothetical protein ATU3699; 15159614, structural genomics, JCSG, PSI, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} (A:)
Probab=5.08 E-value=1.4e+02 Score=14.44 Aligned_cols=14 Identities=7% Similarity=0.119 Sum_probs=8.4
Q ss_pred CCCCEEEHHHHEEE
Q ss_conf 03110127763011
Q gi|254780886|r 20 SCSYSWNLKHAIRK 33 (41)
Q Consensus 20 scsyswnlkhairk 33 (41)
+|+|++|...+...
T Consensus 2 ~~~y~an~e~a~s~ 15 (181)
T 1vki_A 2 GSDKIHHHHHHMTE 15 (181)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
T ss_conf 84323412144467
No 7
>>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:79-240)
Probab=4.57 E-value=3.5e+02 Score=12.66 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=15.6
Q ss_pred CCCEEEEEHHHHHHHHHCC
Q ss_conf 6403630201001221203
Q gi|254780886|r 3 AKGLIVASIISSTAIMSSC 21 (41)
Q Consensus 3 akglivasiisstaimssc 21 (41)
+.|+||+.-..|||..-|+
T Consensus 70 ~DGliVsTptGSTaY~~Sa 88 (162)
T 1yt5_A 70 ADGVVISTPTGSTAYSLSI 88 (162)
T ss_dssp ESEEEEECTGGGGTTTTTT
T ss_pred EEEEEEECCCCCCHHHHHC
T ss_conf 1149984344532677746
No 8
>>3gqn_A Preneck appendage protein; coiled coil, beta helix, beta barrel, ATP binding, viral protein; HET: ATP; 2.15A {Bacillus phage PHI29} (A:467-604)
Probab=4.12 E-value=1.8e+02 Score=14.00 Aligned_cols=28 Identities=29% Similarity=0.205 Sum_probs=23.2
Q ss_pred HHHHHHHHHCCCCEEEHHHHEEEEEEEE
Q ss_conf 0100122120311012776301101113
Q gi|254780886|r 11 IISSTAIMSSCSYSWNLKHAIRKIEIAI 38 (41)
Q Consensus 11 iisstaimsscsyswnlkhairkieiai 38 (41)
|++|-.+.++-+|.-++-|.-.|||+--
T Consensus 98 IlaS~~V~~~gsY~v~gGy~n~K~el~S 125 (138)
T 3gqn_A 98 ILSSYGINTTGSYKVNGGFEKINWELDS 125 (138)
T ss_dssp EEEEESCEECCTTEEEEEBSSEEEEEET
T ss_pred EECCCCCCCCCCEEEECCCCCEEEEEEE
T ss_conf 8703205246862651245650699996
No 9
>>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} (A:290-366)
Probab=3.24 E-value=2e+02 Score=13.79 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=12.8
Q ss_pred HHHHCCCCEEEHHHHEE
Q ss_conf 22120311012776301
Q gi|254780886|r 16 AIMSSCSYSWNLKHAIR 32 (41)
Q Consensus 16 aimsscsyswnlkhair 32 (41)
..++|+.||-.|++.|-
T Consensus 33 G~vTSg~ysp~l~~~Ia 49 (77)
T 1vlo_A 33 GIITSGTFSPTLGYSIA 49 (77)
T ss_dssp EEEEEEEEETTTTEEEE
T ss_pred EEEEEEEECHHCCCEEE
T ss_conf 89987787572196799
No 10
>>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A* (A:94-250)
Probab=3.02 E-value=5e+02 Score=11.98 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.3
Q ss_pred CCCEEEEEHHHHHHHHHCC
Q ss_conf 6403630201001221203
Q gi|254780886|r 3 AKGLIVASIISSTAIMSSC 21 (41)
Q Consensus 3 akglivasiisstaimssc 21 (41)
+.|+||+.-..|||-.-|+
T Consensus 56 ~DGiiVsTptGSTaY~~Sa 74 (157)
T 2i2c_A 56 GDGLCMSTPSGTTAYNKSL 74 (157)
T ss_dssp ESEEEEECTGGGGTHHHHT
T ss_pred CCEEEEECCCCCHHHHHHC
T ss_conf 2569995776641688855
Done!