Query gi|254780886|ref|YP_003065299.1| hypothetical protein CLIBASIA_03915 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 41
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 21:52:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780886.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gwy_A Sticholysin II; cytolys 11.1 31 0.0013 16.7 -0.7 16 14-29 97-112 (175)
2 1yo8_A Thrombospondin-2; EGF, 7.5 85 0.0036 14.7 0.4 22 19-40 559-582 (634)
3 1iaz_A Equinatoxin II; beta-sa 7.1 54 0.0023 15.6 -0.8 15 15-29 100-114 (179)
4 3fby_A COMP, cartilage oligome 5.2 1.5E+02 0.0062 13.7 0.5 22 19-40 470-493 (551)
5 1ux6_A Thrombospondin-1; extra 5.2 1.4E+02 0.0057 13.8 0.3 21 20-40 285-307 (350)
6 1v0d_A DNA fragmentation facto 5.1 76 0.0032 15.0 -1.0 10 24-33 258-267 (329)
7 2i2c_A Probable inorganic poly 3.7 2.9E+02 0.012 12.3 1.4 19 3-21 149-167 (272)
8 3pfn_A NAD kinase; structural 3.3 3.3E+02 0.014 12.1 1.7 20 2-21 246-265 (365)
9 2hue_A Anti-silencing protein 2.6 2.1E+02 0.0087 13.0 -0.6 16 9-24 93-108 (175)
10 2cu9_A Spcia1, histone chapero 2.6 2E+02 0.0083 13.1 -0.7 16 9-24 88-103 (161)
No 1
>1gwy_A Sticholysin II; cytolysin, pore-forming toxin, hemolysis, cnidocyst; 1.71A {Stoichactis helianthus} SCOP: b.97.1.1 PDB: 1o71_A 1o72_A*
Probab=11.09 E-value=31 Score=16.69 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=12.6
Q ss_pred HHHHHHCCCCEEEHHH
Q ss_conf 0122120311012776
Q gi|254780886|r 14 STAIMSSCSYSWNLKH 29 (41)
Q Consensus 14 staimsscsyswnlkh 29 (41)
.-+||-|+.|.|||-.
T Consensus 97 ~laIMfSvPyDynlYs 112 (175)
T 1gwy_A 97 TLGVMFSVPFDYNWYS 112 (175)
T ss_dssp EEEEEEEECSCCSSCC
T ss_pred EEEEEEECCCCHHHHH
T ss_conf 8999994674367776
No 2
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell adhesion; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*
Probab=7.53 E-value=85 Score=14.75 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=14.3
Q ss_pred HCCCCEEEHHH--HEEEEEEEEEC
Q ss_conf 20311012776--30110111314
Q gi|254780886|r 19 SSCSYSWNLKH--AIRKIEIAIKE 40 (41)
Q Consensus 19 sscsyswnlkh--airkieiaike 40 (41)
..-+|.|.|.| .|-.|.+.++|
T Consensus 559 ~~~~y~~~~~~~~~~~~~~~~~~~ 582 (634)
T 1yo8_A 559 DYTAYRWHLTHRPKTGYIRVLVHE 582 (634)
T ss_dssp TTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEEEE
T ss_conf 664568888836875679999964
No 3
>1iaz_A Equinatoxin II; beta-sandwich; 1.90A {Actinia equina} SCOP: b.97.1.1 PDB: 1kd6_A 1tzq_A
Probab=7.07 E-value=54 Score=15.63 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=12.0
Q ss_pred HHHHHCCCCEEEHHH
Q ss_conf 122120311012776
Q gi|254780886|r 15 TAIMSSCSYSWNLKH 29 (41)
Q Consensus 15 taimsscsyswnlkh 29 (41)
-+||-|..|.|||--
T Consensus 100 LaIMfSvPyDYNlYs 114 (179)
T 1iaz_A 100 LAVLFSVPYDYNWYS 114 (179)
T ss_dssp EEEEEEECSCTTTCC
T ss_pred EEEEEECCCCHHHHH
T ss_conf 999992674366655
No 4
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, E4T3C5, calcium, cell adhesion, disease mutation, dwarfism, EGF-like domain; HET: NAG MAN; 3.15A {Homo sapiens}
Probab=5.19 E-value=1.5e+02 Score=13.67 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=13.5
Q ss_pred HCCCCEEEHHHH--EEEEEEEEEC
Q ss_conf 203110127763--0110111314
Q gi|254780886|r 19 SSCSYSWNLKHA--IRKIEIAIKE 40 (41)
Q Consensus 19 sscsyswnlkha--irkieiaike 40 (41)
..-+|.|.|.|. |-.|.+.++|
T Consensus 470 ~~~~y~~~~~~~p~~g~i~~~~~~ 493 (551)
T 3fby_A 470 DKKSYRWFLQHRPQVGYIRVRFYE 493 (551)
T ss_dssp TTCEEEEEEEEEGGGTEEEEEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEEEC
T ss_conf 564368888726875669999940
No 5
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type lectin, glycoprotein, cell adhesion, calcium-binding, heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16 g.75.1.1
Probab=5.15 E-value=1.4e+02 Score=13.82 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=13.1
Q ss_pred CCCCEEEHHH--HEEEEEEEEEC
Q ss_conf 0311012776--30110111314
Q gi|254780886|r 20 SCSYSWNLKH--AIRKIEIAIKE 40 (41)
Q Consensus 20 scsyswnlkh--airkieiaike 40 (41)
.-+|.|.|.| .|-.|.+-++|
T Consensus 285 ~t~y~~~l~hrp~~g~ir~~~~~ 307 (350)
T 1ux6_A 285 FTAYRWRLSHRPKTGFIRVVMYE 307 (350)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEEEE
T ss_conf 63157888844864779999951
No 6
>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
Probab=5.11 E-value=76 Score=14.96 Aligned_cols=10 Identities=60% Similarity=1.225 Sum_probs=7.3
Q ss_pred EEEHHHHEEE
Q ss_conf 0127763011
Q gi|254780886|r 24 SWNLKHAIRK 33 (41)
Q Consensus 24 swnlkhairk 33 (41)
.|||.|-|.+
T Consensus 258 tWNLDH~IE~ 267 (329)
T 1v0d_A 258 TWNLDHIIEK 267 (329)
T ss_dssp TSEEEESSCT
T ss_pred ECCCCCEEEE
T ss_conf 3167205531
No 7
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A*
Probab=3.75 E-value=2.9e+02 Score=12.33 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.1
Q ss_pred CCCEEEEEHHHHHHHHHCC
Q ss_conf 6403630201001221203
Q gi|254780886|r 3 AKGLIVASIISSTAIMSSC 21 (41)
Q Consensus 3 akglivasiisstaimssc 21 (41)
+.|+||+.-..|||...|+
T Consensus 149 ~DGlIVSTptGSTAY~~Sa 167 (272)
T 2i2c_A 149 GDGLCMSTPSGTTAYNKSL 167 (272)
T ss_dssp ESEEEEECTGGGGTHHHHT
T ss_pred EEEEEECCCCCHHHHHHHC
T ss_conf 4289999885269999758
No 8
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=3.28 E-value=3.3e+02 Score=12.11 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=15.2
Q ss_pred CCCCEEEEEHHHHHHHHHCC
Q ss_conf 86403630201001221203
Q gi|254780886|r 2 NAKGLIVASIISSTAIMSSC 21 (41)
Q Consensus 2 nakglivasiisstaimssc 21 (41)
.+.|+||+.-..|||..-|.
T Consensus 246 ~aDGlIVSTPTGSTAYslSA 265 (365)
T 3pfn_A 246 QGDGVIVSTPTGSTAYAAAA 265 (365)
T ss_dssp CSSEEEEECGGGGGTHHHHT
T ss_pred ECCCEEEECCCCCHHHHHHC
T ss_conf 23986997999616768752
No 9
>2hue_A Anti-silencing protein 1; mini beta sheet, elongated beta sandwhich, DNA binding protein; 1.70A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 1wg3_A
Probab=2.61 E-value=2.1e+02 Score=13.01 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=12.3
Q ss_pred EEHHHHHHHHHCCCCE
Q ss_conf 0201001221203110
Q gi|254780886|r 9 ASIISSTAIMSSCSYS 24 (41)
Q Consensus 9 asiisstaimsscsys 24 (41)
..++..|+++-+|||.
T Consensus 93 ~dilGvTvillt~sY~ 108 (175)
T 2hue_A 93 SELVSVTVILLSCSYD 108 (175)
T ss_dssp HHHTSCEEEEEEEEET
T ss_pred HHCCCCEEEEEEEEEC
T ss_conf 5654306999999988
No 10
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=2.57 E-value=2e+02 Score=13.11 Aligned_cols=16 Identities=31% Similarity=0.771 Sum_probs=13.0
Q ss_pred EEHHHHHHHHHCCCCE
Q ss_conf 0201001221203110
Q gi|254780886|r 9 ASIISSTAIMSSCSYS 24 (41)
Q Consensus 9 asiisstaimsscsys 24 (41)
..++..|+++-+|||.
T Consensus 88 ~dilGvTvillt~sY~ 103 (161)
T 2cu9_A 88 SDVLGVTVILLSCAYE 103 (161)
T ss_dssp GGGSEEEEEEEEEEET
T ss_pred HHCCCCEEEEEEEEEC
T ss_conf 4343216999999988
Done!