RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780886|ref|YP_003065299.1| hypothetical protein CLIBASIA_03915 [Candidatus Liberibacter asiaticus str. psy62] (41 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 31.5 bits (71), Expect = 0.043 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 12/33 (36%) Query: 5 GLIVASIISSTAIMSSCSYSW-----NLKHAIR 32 GL+ A I+ + SW +++ AI Sbjct: 276 GLVTAVAIAE-------TDSWESFFVSVRKAIT 301 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.2 bits (64), Expect = 0.22 Identities = 4/12 (33%), Positives = 10/12 (83%) Query: 28 KHAIRKIEIAIK 39 K A++K++ ++K Sbjct: 19 KQALKKLQASLK 30 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.125 0.343 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 319,605 Number of extensions: 7471 Number of successful extensions: 24 Number of sequences better than 10.0: 1 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 3 Length of query: 41 Length of database: 5,693,230 Length adjustment: 14 Effective length of query: 27 Effective length of database: 5,353,814 Effective search space: 144552978 Effective search space used: 144552978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.4 bits)