BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780886|ref|YP_003065299.1| hypothetical protein
CLIBASIA_03915 [Candidatus Liberibacter asiaticus str. psy62]
         (41 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780886|ref|YP_003065299.1| hypothetical protein CLIBASIA_03915 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 41

 Score = 81.3 bits (199), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/41 (100%), Positives = 41/41 (100%)

Query: 1  MNAKGLIVASIISSTAIMSSCSYSWNLKHAIRKIEIAIKEQ 41
          MNAKGLIVASIISSTAIMSSCSYSWNLKHAIRKIEIAIKEQ
Sbjct: 1  MNAKGLIVASIISSTAIMSSCSYSWNLKHAIRKIEIAIKEQ 41


>gi|254781005|ref|YP_003065418.1| hypothetical protein CLIBASIA_04530 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 85

 Score = 44.7 bits (104), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 31/41 (75%)

Query: 1  MNAKGLIVASIISSTAIMSSCSYSWNLKHAIRKIEIAIKEQ 41
          M+ KGLIVAS+ISST IMS CS + + ++ IR++   +K++
Sbjct: 1  MDIKGLIVASLISSTVIMSGCSETLDPENGIRELGARMKQE 41


>537021.9.peg.60_1 
          Length = 44

 Score = 26.6 bits (57), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 1  MNAKGLIVASIISSTAIMSSC-SYSWNLKH 29
          +N K L++ S++SSTAI+S C S+S +  H
Sbjct: 15 VNIKKLLIVSLLSSTAIISGCDSHSGDGVH 44


>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 731

 Score = 23.9 bits (50), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 5   GLIVASIISSTAIMSSCSYSWNLK-HAIRKIEIAI 38
           G + A IIS T      +Y++NLK HA R  +I +
Sbjct: 638 GRLAAVIISGTKYQEVENYAYNLKEHAPRSSDIVV 672


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.125    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,494
Number of Sequences: 1233
Number of extensions: 377
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 41
length of database: 328,796
effective HSP length: 15
effective length of query: 26
effective length of database: 310,301
effective search space:  8067826
effective search space used:  8067826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.9 bits)
S2: 31 (16.5 bits)