Query         gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 86
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Tue May 31 21:43:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780887.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2w07_B PAPF, minor pilin subun   8.9      78  0.0033   13.9   0.7   22   35-56     11-32  (148)
  2 3mxn_A RECQ-mediated genome in   6.6      64  0.0027   14.4  -0.6   14   58-71     13-26  (157)
  3 3ipj_A PTS system, iiabc compo   6.5 1.4E+02   0.006   12.6   1.1   28    4-31      9-44  (95)
  4 1xo8_A AT1G01470; structural g   6.5 1.5E+02  0.0064   12.4   1.4   66    9-83     29-95  (151)
  5 1gmu_A UREE; metallochaperone;   6.1      51  0.0022   14.9  -1.3   55   18-78     87-141 (143)
  6 1jvr_A HTLV-II MA, MA, human T   5.3      71   0.003   14.1  -1.0   22   53-74     60-81  (137)
  7 3dcl_A TM1086; SAD, structural   4.8   2E+02  0.0082   11.9   1.2   18   58-75     27-44  (284)
  8 2enc_A Zinc finger protein 224   4.8   2E+02  0.0083   11.8   1.0   13   60-73     33-45  (46)
  9 1yyc_A LEA protein, putative l   4.7   2E+02  0.0083   11.8   1.0   64   11-83     54-118 (174)
 10 1bhi_A CRE-BP1, ATF-2; CRE bin   4.4 2.1E+02  0.0087   11.7   1.2   16   63-78      2-17  (38)

No 1  
>2w07_B PAPF, minor pilin subunit PAPF; donor strand complementation, NTE, PAPD, groove, immunoglobulin domain, donor-strand exchange, secreted; 2.20A {Escherichia coli}
Probab=8.94  E-value=78  Score=13.92  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=12.5

Q ss_pred             CCCCCCCCEECCCCEEEEEECC
Q ss_conf             3744642000344044454304
Q gi|254780887|r   35 LKPSCNLSTIIPQTVSFELINN   56 (86)
Q Consensus        35 lkpscnlstiipqtvsfelinn   56 (86)
                      .-|+|.++.=-+|+|.|.-++.
T Consensus        11 ~~~~C~I~~~~~~~Vdlg~v~~   32 (148)
T 2w07_B           11 YIPPCTINNGQNIVVDFGNINP   32 (148)
T ss_dssp             SCCCCEEGGGCCCEEECCSCCS
T ss_pred             ECCCCEEECCCCEEEECCEEEH
T ss_conf             9466198199728998950381


No 2  
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens}
Probab=6.56  E-value=64  Score=14.36  Aligned_cols=14  Identities=21%  Similarity=0.494  Sum_probs=6.5

Q ss_pred             CEEEECCCCCCCCC
Q ss_conf             10142278761046
Q gi|254780887|r   58 NYSVSTNDKPFTYP   71 (86)
Q Consensus        58 nysvstndkpftyp   71 (86)
                      +-.+.-+-.||||-
T Consensus        13 ~~~~dl~spPFtYl   26 (157)
T 3mxn_A           13 SIAMDLYSPPFVYL   26 (157)
T ss_dssp             GGHHHHHCSSCCCH
T ss_pred             CEEEECCCCCHHHH
T ss_conf             43541589974589


No 3  
>3ipj_A PTS system, iiabc component; iiabc component,PSI, structural genomics, MCSG, protein structure initiative; 1.20A {Clostridium difficile 630}
Probab=6.55  E-value=1.4e+02  Score=12.55  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=16.1

Q ss_pred             HHHHHHHHCCC--------CCEEEEEEECCCCCCCC
Q ss_conf             78888764035--------40478755214335581
Q gi|254780887|r    4 VEKKILKVGSM--------GITRIRFEMGLRHKNHP   31 (86)
Q Consensus         4 vekkilkvgsm--------gitrirfemglrhknhp   31 (86)
                      ..+.|+..|..        -+||+||++-=.-+-..
T Consensus         9 ~A~~Il~~~G~~NI~~v~~C~TRLR~~lkD~~~vd~   44 (95)
T 3ipj_A            9 IANELIKIIGEDNIISITHCATRLRVMVKDREIIND   44 (95)
T ss_dssp             HHHHHHHHHCGGGEEEEEECSSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHCHHHHCCCCCCCEEEEEEECCHHHCCH
T ss_conf             999999971877553000351268988558334499


No 4  
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=6.48  E-value=1.5e+02  Score=12.43  Aligned_cols=66  Identities=12%  Similarity=0.300  Sum_probs=32.4

Q ss_pred             HHHCCCCCEEEEEEECCCCCCCCHHHCCCCCCCCEECCCCEEEEE-ECCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             764035404787552143355811003744642000344044454-304310142278761046678776677400
Q gi|254780887|r    9 LKVGSMGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFEL-INNLNYSVSTNDKPFTYPSRGASSSDLPIK   83 (86)
Q Consensus         9 lkvgsmgitrirfemglrhknhpkkalkpscnlstiipqtvsfel-innlnysvstndkpftypsrgasssdlpik   83 (86)
                      +++++++...++|+..+|-.|.-.-++ |-|.        ++|.+ +|+....-.+...+.+-|..|...-.+|++
T Consensus        29 v~i~~v~~~~~~~~~~l~V~NPN~~~l-~i~~--------i~y~l~~~g~~i~~G~~~~~~~ipa~~~t~v~vpv~   95 (151)
T 1xo8_A           29 VDLKDVNRDSVEYLAKVSVTNPYSHSI-PICE--------ISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV   95 (151)
T ss_dssp             EEECCCTTTEECEEEEEEEECSSSSCC-CCEE--------EEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred             EEEEEECCCEEEEEEEEEEECCCCCCE-EEEE--------EEEEEEECCEEEEEEECCCCCEECCCCCEEEEEEEE
T ss_conf             797761441489999999979999766-5510--------699999999999846418985876898489999999


No 5  
>1gmu_A UREE; metallochaperone; 1.5A {Klebsiella aerogenes} SCOP: b.107.1.1 d.58.38.1 PDB: 1gmw_A 1gmw_D 1gmv_A
Probab=6.14  E-value=51  Score=14.87  Aligned_cols=55  Identities=22%  Similarity=0.362  Sum_probs=35.4

Q ss_pred             EEEEEECCCCCCCCHHHCCCCCCCCEECCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             7875521433558110037446420003440444543043101422787610466787766
Q gi|254780887|r   18 RIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNLNYSVSTNDKPFTYPSRGASSS   78 (86)
Q Consensus        18 rirfemglrhknhpkkalkpscnlstiipqtvsfelinnlnysvstndkpftypsrgasss   78 (86)
                      |+-++.|-||-.--   +.+  +--.|-+..|--+++.++...|.--+.|| .|-.||.+.
T Consensus        87 rl~~~lGNrH~pl~---i~~--~~l~i~~D~vl~~mL~~lG~~v~~~~~pF-~Pe~GAy~~  141 (143)
T 1gmu_A           87 KACYALGNRHVPLQ---IMP--GELRYHHDHVLDDMLRQFGLTVTFGQLPF-EPEAGAYAS  141 (143)
T ss_dssp             HHHHHHHHTTCCCE---EET--TEEEEECCHHHHHHHHTTTCCEEEEEEEC-CCCSCC---
T ss_pred             HHHHHHHCCCCEEE---EEC--CEEEECCCHHHHHHHHHCCCEEEEEEEEE-CCCCCCCCC
T ss_conf             99999835874079---809--99998787899999997799699978432-787855578


No 6  
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=5.31  E-value=71  Score=14.14  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=15.6

Q ss_pred             EECCCCEEEECCCCCCCCCCCC
Q ss_conf             4304310142278761046678
Q gi|254780887|r   53 LINNLNYSVSTNDKPFTYPSRG   74 (86)
Q Consensus        53 linnlnysvstndkpftypsrg   74 (86)
                      .+|-.|||+-.+--|-.||.|-
T Consensus        60 wlnPInYSlLA~LiPKgYPGRv   81 (137)
T 1jvr_A           60 WLNPIDYSLLASLIPKGYPGRV   81 (137)
T ss_dssp             STTTTCTTTHHHHSCSSCSTTH
T ss_pred             EECCCCHHHHHHHCCCCCCCHH
T ss_conf             3344318999976457898329


No 7  
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=4.77  E-value=2e+02  Score=11.85  Aligned_cols=18  Identities=33%  Similarity=0.434  Sum_probs=10.0

Q ss_pred             CEEEECCCCCCCCCCCCC
Q ss_conf             101422787610466787
Q gi|254780887|r   58 NYSVSTNDKPFTYPSRGA   75 (86)
Q Consensus        58 nysvstndkpftypsrga   75 (86)
                      +|.|...-+||.+|+-|.
T Consensus        27 ~y~v~~dG~~~ilP~~GG   44 (284)
T 3dcl_A           27 PYSVTTEGTVRVIPVLGG   44 (284)
T ss_dssp             SCEECTTSCEECCCCSBS
T ss_pred             CCEECCCCCEEECCCCCC
T ss_conf             857899998876655376


No 8  
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=4.75  E-value=2e+02  Score=11.85  Aligned_cols=13  Identities=31%  Similarity=0.506  Sum_probs=7.6

Q ss_pred             EEECCCCCCCCCCC
Q ss_conf             14227876104667
Q gi|254780887|r   60 SVSTNDKPFTYPSR   73 (86)
Q Consensus        60 svstndkpftypsr   73 (86)
                      .+-|.+|||. |+-
T Consensus        33 riHt~ekPy~-~~~   45 (46)
T 2enc_A           33 RSHSGEKPSG-PSS   45 (46)
T ss_dssp             HHSCCSSCCS-SCC
T ss_pred             HCCCCCCCCC-CCC
T ss_conf             3439988979-898


No 9  
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=4.71  E-value=2e+02  Score=11.83  Aligned_cols=64  Identities=19%  Similarity=0.338  Sum_probs=27.7

Q ss_pred             HCCCCCEEEEEEECCCCCCCCHHHCCCCCCCCEECCCCEEEEE-ECCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4035404787552143355811003744642000344044454-304310142278761046678776677400
Q gi|254780887|r   11 VGSMGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFEL-INNLNYSVSTNDKPFTYPSRGASSSDLPIK   83 (86)
Q Consensus        11 vgsmgitrirfemglrhknhpkkalkpscnlstiipqtvsfel-innlnysvstndkpftypsrgasssdlpik   83 (86)
                      +.+++.+.+.|+.-+|-+|--.-+| |-|.++        |.| +|.....-.+-..|.+-|..|...-++|++
T Consensus        54 i~~vs~~~~~l~~~l~V~NPN~~~L-pi~~i~--------y~L~~~G~~lasG~~~~~~~Ipa~g~t~v~vpv~  118 (174)
T 1yyc_A           54 FKGVTRDGVDYHAKVSVKNPYSQSI-PICQIS--------YILKSATRTIASGTIPDPGSLVGSGTTVLDVPVK  118 (174)
T ss_dssp             EEEECSSSEEEEEEEEEEECSSSCC-BCCSEE--------EEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEEECCCCCCC-CCCCEE--------EEEEECCEEEECCCCCCCCEECCCCCEEEEEEEE
T ss_conf             3240552279999999989798774-113259--------9999999998711358986877888589999899


No 10 
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=4.45  E-value=2.1e+02  Score=11.72  Aligned_cols=16  Identities=31%  Similarity=0.671  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCCCC
Q ss_conf             2787610466787766
Q gi|254780887|r   63 TNDKPFTYPSRGASSS   78 (86)
Q Consensus        63 tndkpftypsrgasss   78 (86)
                      ..||||.-++-|.+-+
T Consensus         2 ~ddkPf~C~~~GC~~~   17 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQR   17 (38)
T ss_dssp             TTCCCEECCCTTTCCE
T ss_pred             CCCCCEECCCCCCCCC
T ss_conf             8787563378984323


Done!