Query gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 86
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:21:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780887.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v8ca2 d.129.5.1 (A:88-165) M 28.7 7.3 0.00053 18.0 0.6 18 7-24 44-61 (78)
2 d1xo8a_ b.1.25.1 (A:) Putative 14.2 33 0.0024 14.6 1.4 66 9-83 29-95 (151)
3 d1bhia_ g.37.1.1 (A:) Transact 6.3 89 0.0065 12.4 1.2 16 63-78 2-17 (38)
4 d1n12a_ b.2.3.2 (A:) PapE pilu 6.3 63 0.0046 13.2 0.4 13 37-52 2-14 (138)
5 d2cyga1 c.1.8.3 (A:29-340) Pla 4.1 1.3E+02 0.0093 11.6 1.4 14 7-22 20-33 (312)
6 d1gmua2 d.58.38.1 (A:71-138) U 3.8 55 0.004 13.5 -1.3 53 17-75 16-68 (68)
7 d2q1ma1 b.22.1.1 (A:57-172) Gl 3.4 1.5E+02 0.011 11.2 0.8 36 18-56 54-89 (116)
8 d1jvra_ a.61.1.2 (A:) HTLV-II 3.4 71 0.0051 12.9 -1.0 20 54-73 61-80 (137)
9 d1e4ra_ g.9.1.1 (A:) Beta-defe 3.3 1.4E+02 0.0099 11.4 0.3 15 15-30 11-25 (35)
10 d1x7fa2 c.1.8.12 (A:1-244) Out 3.2 1.2E+02 0.0088 11.7 0.0 32 13-44 90-126 (244)
No 1
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=28.68 E-value=7.3 Score=18.05 Aligned_cols=18 Identities=44% Similarity=0.719 Sum_probs=14.3
Q ss_pred HHHHHCCCCCEEEEEEEC
Q ss_conf 887640354047875521
Q gi|254780887|r 7 KILKVGSMGITRIRFEMG 24 (86)
Q Consensus 7 kilkvgsmgitrirfemg 24 (86)
.-|+|||..|.|.|.|.-
T Consensus 44 ~pl~vgsl~ip~lrveve 61 (78)
T d1v8ca2 44 EPLKVGSLSIPQLRVEVE 61 (78)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred CCCEECCEECCEEEEEEC
T ss_conf 971004230450789864
No 2
>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=14.16 E-value=33 Score=14.60 Aligned_cols=66 Identities=12% Similarity=0.295 Sum_probs=37.4
Q ss_pred HHHCCCCCEEEEEEECCCCCCCCHHHCCCCCCCCEECCCCEEEEE-ECCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 764035404787552143355811003744642000344044454-304310142278761046678776677400
Q gi|254780887|r 9 LKVGSMGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFEL-INNLNYSVSTNDKPFTYPSRGASSSDLPIK 83 (86)
Q Consensus 9 lkvgsmgitrirfemglrhknhpkkalkpscnlstiipqtvsfel-innlnysvstndkpftypsrgasssdlpik 83 (86)
+.+.+++...++|+..+|-.|.-.-.+ |-| .++|+| +|+......+.+.+++-|..|...-.+|++
T Consensus 29 v~i~~v~~~~~~l~~~l~V~NPN~~~l-~i~--------~l~y~l~~~g~~ia~G~~~~~~~ipa~~~~~v~vpv~ 95 (151)
T d1xo8a_ 29 VDLKDVNRDSVEYLAKVSVTNPYSHSI-PIC--------EISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV 95 (151)
T ss_dssp EEECCCTTTEECEEEEEEEECSSSSCC-CCE--------EEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred EEEEECCCCEEEEEEEEEEECCCCCCE-EEE--------EEEEEEEECCEEEEEEECCCCCEECCCCCEEEEEEEE
T ss_conf 896313542489999999979899766-532--------1799999999998857138974886888389999999
No 3
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.33 E-value=89 Score=12.39 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 2787610466787766
Q gi|254780887|r 63 TNDKPFTYPSRGASSS 78 (86)
Q Consensus 63 tndkpftypsrgasss 78 (86)
..||||.-++-|.+-+
T Consensus 2 ~ddkPF~C~~pGC~q~ 17 (38)
T d1bhia_ 2 SDDKPFLCTAPGCGQR 17 (38)
T ss_dssp TTCCCEECCCTTTCCE
T ss_pred CCCCCEECCCCCCCCC
T ss_conf 8787531489985532
No 4
>d1n12a_ b.2.3.2 (A:) PapE pilus subunit {Escherichia coli [TaxId: 562]}
Probab=6.26 E-value=63 Score=13.17 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=4.9
Q ss_pred CCCCCCEECCCCEEEE
Q ss_conf 4464200034404445
Q gi|254780887|r 37 PSCNLSTIIPQTVSFE 52 (86)
Q Consensus 37 pscnlstiipqtvsfe 52 (86)
|+|.++ .++|.|-
T Consensus 2 P~Ctv~---~~~V~fG 14 (138)
T d1n12a_ 2 PACTVS---NTTVDWQ 14 (138)
T ss_dssp CCCEEC---CEEEEEE
T ss_pred CCCEEC---CCEECCC
T ss_conf 972874---9977287
No 5
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]}
Probab=4.14 E-value=1.3e+02 Score=11.59 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=9.4
Q ss_pred HHHHHCCCCCEEEEEE
Q ss_conf 8876403540478755
Q gi|254780887|r 7 KILKVGSMGITRIRFE 22 (86)
Q Consensus 7 kilkvgsmgitrirfe 22 (86)
++|| ++||++||.-
T Consensus 20 ~lLk--~~~i~~IRlY 33 (312)
T d2cyga1 20 SLYK--SNNIARMRLY 33 (312)
T ss_dssp HHHH--HTTCCEEEES
T ss_pred HHHH--HCCCCEEEEE
T ss_conf 9999--6798989971
No 6
>d1gmua2 d.58.38.1 (A:71-138) Urease metallochaperone UreE, C-terminal domain {Klebsiella aerogenes [TaxId: 28451]}
Probab=3.75 E-value=55 Score=13.48 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=34.2
Q ss_pred EEEEEEECCCCCCCCHHHCCCCCCCCEECCCCEEEEEECCCCEEEECCCCCCCCCCCCC
Q ss_conf 47875521433558110037446420003440444543043101422787610466787
Q gi|254780887|r 17 TRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNLNYSVSTNDKPFTYPSRGA 75 (86)
Q Consensus 17 trirfemglrhknhpkkalkpscnlstiipqtvsfelinnlnysvstndkpftypsrga 75 (86)
.|+-+..|-||-.-- +.+ +---|-+.-|--+++..|...|..-..|| .|-.||
T Consensus 16 ~r~A~HLGNRH~p~q---i~~--~~l~i~~DhVl~~ml~~lG~~v~~~~~pF-~PE~GA 68 (68)
T d1gmua2 16 AKACYALGNRHVPLQ---IMP--GELRYHHDHVLDDMLRQFGLTVTFGQLPF-EPEAGA 68 (68)
T ss_dssp HHHHHHHHHTTCCCE---EET--TEEEEECCHHHHHHHHTTTCCEEEEEEEC-CCCSCC
T ss_pred HHHHHHHCCCCCCEE---EEC--CEEEECCCHHHHHHHHHCCCEEEEEEECC-CCCCCC
T ss_conf 999998767846539---819--99998588799999997799789945367-899999
No 7
>d2q1ma1 b.22.1.1 (A:57-172) Glucocorticoid-induced TNF-related ligand, TNFSF18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.44 E-value=1.5e+02 Score=11.25 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=25.3
Q ss_pred EEEEEECCCCCCCCHHHCCCCCCCCEECCCCEEEEEECC
Q ss_conf 787552143355811003744642000344044454304
Q gi|254780887|r 18 RIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINN 56 (86)
Q Consensus 18 rirfemglrhknhpkkalkpscnlstiipqtvsfelinn 56 (86)
+.-||.-++.++++-.+| .|-|.|.|-.-.+||-..
T Consensus 54 ~APF~V~l~kn~d~iQtL---tN~~~i~~vGG~YElhaG 89 (116)
T d2q1ma1 54 VAPFEVRLYKNKDMIQTL---TNKSKIQNVGGTYELHVG 89 (116)
T ss_dssp SSCCCEEEEETTEEEEEE---CCSSSCEECCEEEEECTT
T ss_pred CCCEEEEEEECCCHHHHH---HCCCEEEECCCEEEECCC
T ss_conf 898699996257678864---066567774747896379
No 8
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=3.43 E-value=71 Score=12.92 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=12.2
Q ss_pred ECCCCEEEECCCCCCCCCCC
Q ss_conf 30431014227876104667
Q gi|254780887|r 54 INNLNYSVSTNDKPFTYPSR 73 (86)
Q Consensus 54 innlnysvstndkpftypsr 73 (86)
+|-.|||+..+--|-.||.|
T Consensus 61 l~Pi~ySlla~liPkgypGR 80 (137)
T d1jvra_ 61 LNPIDYSLLASLIPKGYPGR 80 (137)
T ss_dssp TTTTCTTTHHHHSCSSCSTT
T ss_pred CCCCCCCHHHCCCCCCCCCC
T ss_conf 26601001012378998860
No 9
>d1e4ra_ g.9.1.1 (A:) Beta-defensin, BD {Mouse (Mus musculus), MBD6 [TaxId: 10090]}
Probab=3.30 E-value=1.4e+02 Score=11.43 Aligned_cols=15 Identities=53% Similarity=0.786 Sum_probs=8.6
Q ss_pred CCEEEEEEECCCCCCC
Q ss_conf 4047875521433558
Q gi|254780887|r 15 GITRIRFEMGLRHKNH 30 (86)
Q Consensus 15 gitrirfemglrhknh 30 (86)
||-..| -.|||||--
T Consensus 11 gicqyr-ciglrhkig 25 (35)
T d1e4ra_ 11 GICQYR-CIGLRHKIG 25 (35)
T ss_dssp CEEESC-CCTTSCCSB
T ss_pred CEEEEE-EEEEEEECC
T ss_conf 787788-723430325
No 10
>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]}
Probab=3.23 E-value=1.2e+02 Score=11.70 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=0.0
Q ss_pred CCCCEEEEEEECCCCCC-----CCHHHCCCCCCCCEE
Q ss_conf 35404787552143355-----811003744642000
Q gi|254780887|r 13 SMGITRIRFEMGLRHKN-----HPKKALKPSCNLSTI 44 (86)
Q Consensus 13 smgitrirfemglrhkn-----hpkkalkpscnlsti 44 (86)
.+|++-||...|.-... +-...++-..|.||+
T Consensus 90 ~lGi~glRlD~Gf~~~e~a~ms~n~~~l~I~LNaSt~ 126 (244)
T d1x7fa2 90 ELGADGIRLDVGFDGLTEAKMTNNPYGLKIELNVSND 126 (244)
T ss_dssp HHTCSEEEESSCCSSHHHHHHTTCTTCCEEEEETTSC
T ss_pred HCCCCEEEECCCCCHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 7799889973899867999984487587799978767
Done!