RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62] (86 letters) >gnl|CDD|33607 COG3814, COG3814, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 157 Score = 25.3 bits (55), Expect = 3.7 Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 14 MGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNLNYSVSTNDKPFTYPSR 73 + +T F + L P+K P L +V+FEL +++ ++ +P PS Sbjct: 74 LKVTDTGFSVTLSFSGVPEKLYIPFDALRGFYDPSVNFELEFDVSLNIEEEAEPEAEPSN 133 Query: 74 GASSS 78 A S Sbjct: 134 KAKSG 138 >gnl|CDD|31934 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]. Length = 389 Score = 24.9 bits (54), Expect = 4.7 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Query: 15 GITRIRFEMGLRHKNHPK--KALKP 37 G+ R RFEM R+ H + KAL+ Sbjct: 229 GVVRTRFEMTFRYPGHLEVIKALRD 253 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.316 0.132 0.374 Gapped Lambda K H 0.267 0.0563 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 950,313 Number of extensions: 38045 Number of successful extensions: 77 Number of sequences better than 10.0: 1 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 4 Length of query: 86 Length of database: 6,263,737 Length adjustment: 55 Effective length of query: 31 Effective length of database: 5,075,242 Effective search space: 157332502 Effective search space used: 157332502 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (23.8 bits)