RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780887|ref|YP_003065300.1| hypothetical protein
CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)



>gnl|CDD|150299 pfam09586, YfhO, Bacterial membrane protein YfhO.  This protein is
           a conserved membrane protein. The yfhO gene is
           transcribed in Difco sporulation medium and the
           transcription is affected by the YvrGHb two-component
           system. Some members of this family have been annotated
           as glycosyl transferases of the PMT family.
          Length = 835

 Score = 27.2 bits (61), Expect = 0.95
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 48  TVSFELINNLNYSVSTNDKPFTYPSRGASSSDL 80
            V  EL  N   S++   K + Y SR   +   
Sbjct: 433 VVVLELGLNAYLSLNGISKEWQYSSRSLYAEYY 465


>gnl|CDD|149555 pfam08540, HMG_CoA_synt_C, Hydroxymethylglutaryl-coenzyme A
           synthase C terminal. 
          Length = 282

 Score = 25.8 bits (57), Expect = 2.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 23  MGLRHKNHPKKALKPSCNLSTIIPQT 48
           M LR + H KK   P  ++ ++ P T
Sbjct: 240 MELREQAHHKKNFTPQGSIDSLFPGT 265


>gnl|CDD|162552 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase,
           eukaryotic clade.  Hydroxymethylglutaryl(HMG)-CoA
           synthase is the first step of isopentenyl pyrophosphate
           (IPP) biosynthesis via the mevalonate pathway. This
           pathway is found mainly in eukaryotes, but also in
           archaea and some bacteria. This model is specific for
           eukaryotes.
          Length = 454

 Score = 24.7 bits (54), Expect = 5.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 23  MGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNL 57
           M LR + H KK   P  ++  + P T   E +++ 
Sbjct: 412 MELREQAHHKKNFTPQGSIDLLFPGTWYLERVDSK 446


>gnl|CDD|184763 PRK14607, PRK14607, bifunctional glutamine
           amidotransferase/anthranilate phosphoribosyltransferase;
           Provisional.
          Length = 534

 Score = 24.3 bits (53), Expect = 7.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 23  MGLRHKNHP 31
           MG+RHK HP
Sbjct: 154 MGIRHKEHP 162


>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional.
          Length = 328

 Score = 24.2 bits (53), Expect = 8.1
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 8/34 (23%)

Query: 6   KKILKVGSMGITR--------IRFEMGLRHKNHP 31
           ++   V  +G+ R        I+FE GL H++ P
Sbjct: 160 RRWTHVVWLGVYRRDFIVKNNIKFEPGLHHQDIP 193


>gnl|CDD|182064 PRK09762, PRK09762, galactosamine-6-phosphate isomerase;
           Provisional.
          Length = 232

 Score = 24.0 bits (52), Expect = 8.4
 Identities = 8/26 (30%), Positives = 18/26 (69%)

Query: 29  NHPKKALKPSCNLSTIIPQTVSFELI 54
           N P ++L+P+C++S +  +T   E++
Sbjct: 141 NEPGESLQPACHISQLDARTQQHEML 166


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.316    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,280,646
Number of extensions: 61399
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 9
Length of query: 86
Length of database: 5,994,473
Length adjustment: 55
Effective length of query: 31
Effective length of database: 4,806,033
Effective search space: 148987023
Effective search space used: 148987023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)