RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780887|ref|YP_003065300.1| hypothetical protein
CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)



>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme-
           inhibitor complex, structural genomics, protein
           structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo
           sapiens} (W:)
          Length = 461

 Score = 28.0 bits (60), Expect = 0.40
 Identities = 2/25 (8%), Positives = 6/25 (24%), Gaps = 2/25 (8%)

Query: 38  SCNLSTIIPQTVS--FELINNLNYS 60
               S  +   +    +   +L   
Sbjct: 436 DIYWSEEMEDRLQALEKDKPSLRVI 460


>3a24_A Alpha-galactosidase; glycoside hydrolase family 97,
          retaining glycosidase; HET: MES; 2.30A {Bacteroides
          thetaiotaomicron} (A:1-270)
          Length = 270

 Score = 26.0 bits (57), Expect = 1.7
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 48 TVSFELINNLNYSVSTNDKPFTYPSR 73
            +  + + L Y ++ N +    PS 
Sbjct: 12 KTTITIGDRLTYDITCNGRQILTPSP 37


>3bf2_A Putative lipoprotein; NESG, MR36A, structural genomics,
          PSI-2, protein structure initiative; 2.60A {Neisseria
          meningitidis FAM18} (A:)
          Length = 152

 Score = 24.7 bits (54), Expect = 4.5
 Identities = 5/27 (18%), Positives = 8/27 (29%)

Query: 47 QTVSFELINNLNYSVSTNDKPFTYPSR 73
              + LI  +   V    +P   P  
Sbjct: 72 VINEYLLILTVEAQVLKRGEPVGKPXT 98


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 585,649
Number of extensions: 20631
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 4
Length of query: 86
Length of database: 4,956,049
Length adjustment: 49
Effective length of query: 37
Effective length of database: 3,299,604
Effective search space: 122085348
Effective search space used: 122085348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)