BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780887|ref|YP_003065300.1| hypothetical protein
CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62]
         (86 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 86

 Score =  175 bits (444), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MSKVEKKILKVGSMGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNLNYS 60
          MSKVEKKILKVGSMGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNLNYS
Sbjct: 1  MSKVEKKILKVGSMGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNLNYS 60

Query: 61 VSTNDKPFTYPSRGASSSDLPIKGLI 86
          VSTNDKPFTYPSRGASSSDLPIKGLI
Sbjct: 61 VSTNDKPFTYPSRGASSSDLPIKGLI 86


>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 737

 Score = 26.9 bits (58), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 60  SVSTNDKPFTYPSRGASSSDLPIKGL 85
            ++TNDK F    RG   ++LPIK L
Sbjct: 342 GITTNDKLFRVIHRGEEVANLPIKAL 367


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 26.2 bits (56), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 33  KALKPSCNLSTIIPQTVSFELINNLNYSVSTNDKPFT 69
           +A    C +S ++P+ V FE+  +L   V+  D   T
Sbjct: 237 EAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLT 273


>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 622

 Score = 24.6 bits (52), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 13  SMGITRIRFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFELINNL 57
           ++ + ++R E+GLR   +PKK LK S  ++TI+      ++I+++
Sbjct: 578 TVSVEQLR-ELGLRIVENPKKILKIS--VTTILRNVYGLKIIHSI 619



 Score = 20.4 bits (41), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 13  SMGITRIRFEMGLRHKNHPKKALKPS----CNLSTIIPQTVSFELINNLNYSVSTNDK 66
           + GI RI   + L  KN  + +L P     C+L    P TVS E +  L   +  N K
Sbjct: 540 AAGIDRIVMLL-LGAKNVREVSLFPMSQNFCDLLMGSPSTVSVEQLRELGLRIVENPK 596


>gi|254780955|ref|YP_003065368.1| hypothetical protein CLIBASIA_04270 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 204

 Score = 23.5 bits (49), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 20  RFEMGLRHKNHPKKALKPSCNLSTIIPQTVSFEL 53
            FE+GL   N P++ + P   +      +V+FEL
Sbjct: 105 HFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFEL 138


>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 470

 Score = 20.8 bits (42), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 7   KILKVGSMGITRIRFEMGLRHKNHP 31
           ++L     GITR    +    KNHP
Sbjct: 228 RLLTGSQSGITRDSVSISWNWKNHP 252


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.132    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,849
Number of Sequences: 1233
Number of extensions: 1858
Number of successful extensions: 9
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 86
length of database: 328,796
effective HSP length: 55
effective length of query: 31
effective length of database: 260,981
effective search space:  8090411
effective search space used:  8090411
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.7 bits)
S2: 31 (16.5 bits)