Query gi|254780888|ref|YP_003065301.1| hypothetical protein CLIBASIA_03925 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 64 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 19:59:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780888.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2k5j_A Uncharacterized protei 8.6 59 0.0017 15.4 -0.8 19 4-22 2-20 (80) 2 >1bf6_A Phosphotriesterase hom 7.9 93 0.0028 14.4 -0.1 21 7-30 54-74 (146) 3 >1ivd_A Influenza A subtype N2 7.5 85 0.0025 14.6 -0.4 14 10-23 16-29 (56) 4 >1v0z_A Neuraminidase; glycosi 7.0 82 0.0024 14.7 -0.7 14 10-23 27-40 (66) 5 >1izn_B CAPZ beta-1 subunit; h 5.8 2.4E+02 0.0072 12.3 1.5 33 16-48 140-172 (203) 6 >1ej6_B Lambda1; icosahedral, 5.7 2.3E+02 0.0068 12.4 1.0 13 40-52 12-24 (101) 7 >1lns_A X-prolyl dipeptidyl am 5.4 2.5E+02 0.0073 12.3 1.0 14 24-37 74-87 (176) 8 >1hyw_A GPW, head-TO-tail join 5.3 1.5E+02 0.0043 13.4 -0.2 23 5-27 13-35 (68) 9 >2cya_A Tyrosyl-tRNA synthetas 5.0 1.8E+02 0.0053 13.0 0.1 5 17-21 6-10 (106) 10 >1b7y_B Phers, protein (phenyl 4.5 1.9E+02 0.0057 12.8 -0.0 11 4-14 50-60 (135) No 1 >>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str} (A:) Probab=8.63 E-value=59 Score=15.38 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=14.4 Q ss_pred CCCCHHHHHHHHHHHCCCC Q ss_conf 2110332002322200146 Q gi|254780888|r 4 RPIHAMDMGRTVVKMSKSG 22 (64) Q Consensus 4 rpihamdmgrtvvkmsksg 22 (64) .++..|||.||.+.++..- T Consensus 2 ~~~~~~~M~Rt~IdL~ee~ 20 (80) T 2k5j_A 2 NSLAGIDMGRILLDLSNEV 20 (80) T ss_dssp CCCSSTTCCEEEEEECHHH T ss_pred CCHHHCCHHHHHCCCCHHH T ss_conf 5310000456421599999 No 2 >>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} (A:1-88,A:234-291) Probab=7.87 E-value=93 Score=14.37 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=14.7 Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 033200232220014630000030 Q gi|254780888|r 7 HAMDMGRTVVKMSKSGVISEKTGL 30 (64) Q Consensus 7 hamdmgrtvvkmsksgvisektgl 30 (64) -.++|||.+-++.+ +||+||+ T Consensus 54 T~~g~GRd~~~l~~---is~~tGv 74 (146) T 1bf6_A 54 TNRYMGRNAQFMLD---VMRETGI 74 (146) T ss_dssp CCGGGTCCHHHHHH---HHHHHCC T ss_pred CCCCCCCCHHHHHH---HHHHCCC T ss_conf 88866558999999---9985788 No 3 >>1ivd_A Influenza A subtype N2 neuraminidase; hydrolase (O-glycosyl); HET: NAG BMA FUL MAN FUC ST1; 1.90A {Influenza a virus} (A:265-320) Probab=7.48 E-value=85 Score=14.57 Aligned_cols=14 Identities=50% Similarity=0.560 Sum_probs=11.8 Q ss_pred HHHHHHHHHCCCCC Q ss_conf 20023222001463 Q gi|254780888|r 10 DMGRTVVKMSKSGV 23 (64) Q Consensus 10 dmgrtvvkmsksgv 23 (64) =||||.-+-|.||. T Consensus 16 W~GRTiS~~sRsGf 29 (56) T 1ivd_A 16 WMGRTISKDLRSGY 29 (56) T ss_dssp EEEEESCSSSSCCE T ss_pred EEEEEECCCCCCCC T ss_conf 87653147666762 No 4 >>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A* (A:255-320) Probab=7.05 E-value=82 Score=14.66 Aligned_cols=14 Identities=50% Similarity=0.627 Sum_probs=11.7 Q ss_pred HHHHHHHHHCCCCC Q ss_conf 20023222001463 Q gi|254780888|r 10 DMGRTVVKMSKSGV 23 (64) Q Consensus 10 dmgrtvvkmsksgv 23 (64) =||||.-+-|.||. T Consensus 27 W~GRTiS~~sRsGf 40 (66) T 1v0z_A 27 WLGRTISKDSRSGY 40 (66) T ss_dssp EEEECSSSSSSEEE T ss_pred EEEEECCCCCCCCC T ss_conf 86651047666761 No 5 >>1izn_B CAPZ beta-1 subunit; heterodimer, capping protein, actin filament barbed END capping, protein binding; 2.10A {Gallus gallus} (B:46-248) Probab=5.76 E-value=2.4e+02 Score=12.30 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=23.2 Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHH Q ss_conf 220014630000030345431784153397664 Q gi|254780888|r 16 VKMSKSGVISEKTGLMSAVIIEPPHIINIIKIM 48 (64) Q Consensus 16 vkmsksgvisektglmsaviiepphiiniikim 48 (64) .+|.-||.++...---..+-...+||.||=+.. T Consensus 140 g~~~lsG~ltrq~e~~~~~~~~~~Hi~NiG~lI 172 (203) T 1izn_B 140 GTMNLGGSLTRQMEKDETVSDSSPHIANIGRLV 172 (203) T ss_dssp EEEEEEEEEEEEEEEEEECCSSSCHHHHHHHHH T ss_pred CEEECCCEEEEEEECCCCCCCCCCHHHHHHHHH T ss_conf 406325135651001206789865999999999 No 6 >>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} (B:504-528,B:910-985) Probab=5.70 E-value=2.3e+02 Score=12.40 Aligned_cols=13 Identities=54% Similarity=0.621 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHHH Q ss_conf 1533976642352 Q gi|254780888|r 40 HIINIIKIMNIIM 52 (64) Q Consensus 40 hiiniikimniim 52 (64) .|-.||.||||-- T Consensus 12 ~~~~~~~~~~~~~ 24 (101) T 1ej6_B 12 QISQIIRIMNIGN 24 (101) T ss_dssp HHHHHHHHHTTTT T ss_pred HHHHHHHHHHCCC T ss_conf 9999998851356 No 7 >>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} (A:552-640,A:677-763) Probab=5.41 E-value=2.5e+02 Score=12.27 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=10.6 Q ss_pred CCCCCCCEEEEEEC Q ss_conf 00000303454317 Q gi|254780888|r 24 ISEKTGLMSAVIIE 37 (64) Q Consensus 24 isektglmsaviie 37 (64) -|+..||.||-+++ T Consensus 74 ~~~~~gl~saq~l~ 87 (176) T 1lns_A 74 LNDTKGFLSAQILD 87 (176) T ss_dssp ESSSCCEEEEEEEE T ss_pred ECCCCCEEEEEEEE T ss_conf 77987089999999 No 8 >>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} (A:) Probab=5.33 E-value=1.5e+02 Score=13.41 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=18.2 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC Q ss_conf 11033200232220014630000 Q gi|254780888|r 5 PIHAMDMGRTVVKMSKSGVISEK 27 (64) Q Consensus 5 pihamdmgrtvvkmsksgvisek 27 (64) ..|.+-.|+.|+..||.|---|- T Consensus 13 AlH~LltGk~vvsv~kdGr~vey 35 (68) T 1hyw_A 13 ALHDLMTGKRVATVQKDGRRVEF 35 (68) T ss_dssp HHHHHTTSCCCEEEECSSCEEEE T ss_pred HHHHHHCCCEEEEEECCCCEEEE T ss_conf 99987507666756217818898 No 9 >>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Aeropyrum pernix} (A:233-338) Probab=4.98 E-value=1.8e+02 Score=12.95 Aligned_cols=5 Identities=100% Similarity=1.006 Sum_probs=0.0 Q ss_pred HHCCC Q ss_conf 20014 Q gi|254780888|r 17 KMSKS 21 (64) Q Consensus 17 kmsks 21 (64) ||||| T Consensus 6 KMSkS 10 (106) T 2cya_A 6 KMSKS 10 (106) T ss_dssp BCCSS T ss_pred CCCCC T ss_conf 65568 No 10 >>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} (B:209-267,B:325-400) Probab=4.52 E-value=1.9e+02 Score=12.79 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=0.0 Q ss_pred CCCCHHHHHHH Q ss_conf 21103320023 Q gi|254780888|r 4 RPIHAMDMGRT 14 (64) Q Consensus 4 rpihamdmgrt 14 (64) .|+||.|..++ T Consensus 50 qP~hafD~~kt 60 (135) T 1b7y_B 50 QPMHAFDLRFR 60 (135) T ss_dssp CCCEEEEGGGC T ss_pred CCCCCCCCCCH T ss_conf 00123432110 Done!