Query         gi|254780888|ref|YP_003065301.1| hypothetical protein CLIBASIA_03925 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 64
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 19:59:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780888.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2k5j_A Uncharacterized protei   8.6      59  0.0017   15.4  -0.8   19    4-22      2-20  (80)
  2 >1bf6_A Phosphotriesterase hom   7.9      93  0.0028   14.4  -0.1   21    7-30     54-74  (146)
  3 >1ivd_A Influenza A subtype N2   7.5      85  0.0025   14.6  -0.4   14   10-23     16-29  (56)
  4 >1v0z_A Neuraminidase; glycosi   7.0      82  0.0024   14.7  -0.7   14   10-23     27-40  (66)
  5 >1izn_B CAPZ beta-1 subunit; h   5.8 2.4E+02  0.0072   12.3   1.5   33   16-48    140-172 (203)
  6 >1ej6_B Lambda1; icosahedral,    5.7 2.3E+02  0.0068   12.4   1.0   13   40-52     12-24  (101)
  7 >1lns_A X-prolyl dipeptidyl am   5.4 2.5E+02  0.0073   12.3   1.0   14   24-37     74-87  (176)
  8 >1hyw_A GPW, head-TO-tail join   5.3 1.5E+02  0.0043   13.4  -0.2   23    5-27     13-35  (68)
  9 >2cya_A Tyrosyl-tRNA synthetas   5.0 1.8E+02  0.0053   13.0   0.1    5   17-21      6-10  (106)
 10 >1b7y_B Phers, protein (phenyl   4.5 1.9E+02  0.0057   12.8  -0.0   11    4-14     50-60  (135)

No 1  
>>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str} (A:)
Probab=8.63  E-value=59  Score=15.38  Aligned_cols=19  Identities=26%  Similarity=0.566  Sum_probs=14.4

Q ss_pred             CCCCHHHHHHHHHHHCCCC
Q ss_conf             2110332002322200146
Q gi|254780888|r    4 RPIHAMDMGRTVVKMSKSG   22 (64)
Q Consensus         4 rpihamdmgrtvvkmsksg   22 (64)
                      .++..|||.||.+.++..-
T Consensus         2 ~~~~~~~M~Rt~IdL~ee~   20 (80)
T 2k5j_A            2 NSLAGIDMGRILLDLSNEV   20 (80)
T ss_dssp             CCCSSTTCCEEEEEECHHH
T ss_pred             CCHHHCCHHHHHCCCCHHH
T ss_conf             5310000456421599999


No 2  
>>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} (A:1-88,A:234-291)
Probab=7.87  E-value=93  Score=14.37  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=14.7

Q ss_pred             CHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             033200232220014630000030
Q gi|254780888|r    7 HAMDMGRTVVKMSKSGVISEKTGL   30 (64)
Q Consensus         7 hamdmgrtvvkmsksgvisektgl   30 (64)
                      -.++|||.+-++.+   +||+||+
T Consensus        54 T~~g~GRd~~~l~~---is~~tGv   74 (146)
T 1bf6_A           54 TNRYMGRNAQFMLD---VMRETGI   74 (146)
T ss_dssp             CCGGGTCCHHHHHH---HHHHHCC
T ss_pred             CCCCCCCCHHHHHH---HHHHCCC
T ss_conf             88866558999999---9985788


No 3  
>>1ivd_A Influenza A subtype N2 neuraminidase; hydrolase (O-glycosyl); HET: NAG BMA FUL MAN FUC ST1; 1.90A {Influenza a virus} (A:265-320)
Probab=7.48  E-value=85  Score=14.57  Aligned_cols=14  Identities=50%  Similarity=0.560  Sum_probs=11.8

Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             20023222001463
Q gi|254780888|r   10 DMGRTVVKMSKSGV   23 (64)
Q Consensus        10 dmgrtvvkmsksgv   23 (64)
                      =||||.-+-|.||.
T Consensus        16 W~GRTiS~~sRsGf   29 (56)
T 1ivd_A           16 WMGRTISKDLRSGY   29 (56)
T ss_dssp             EEEEESCSSSSCCE
T ss_pred             EEEEEECCCCCCCC
T ss_conf             87653147666762


No 4  
>>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A* (A:255-320)
Probab=7.05  E-value=82  Score=14.66  Aligned_cols=14  Identities=50%  Similarity=0.627  Sum_probs=11.7

Q ss_pred             HHHHHHHHHCCCCC
Q ss_conf             20023222001463
Q gi|254780888|r   10 DMGRTVVKMSKSGV   23 (64)
Q Consensus        10 dmgrtvvkmsksgv   23 (64)
                      =||||.-+-|.||.
T Consensus        27 W~GRTiS~~sRsGf   40 (66)
T 1v0z_A           27 WLGRTISKDSRSGY   40 (66)
T ss_dssp             EEEECSSSSSSEEE
T ss_pred             EEEEECCCCCCCCC
T ss_conf             86651047666761


No 5  
>>1izn_B CAPZ beta-1 subunit; heterodimer, capping protein, actin filament barbed END capping, protein binding; 2.10A {Gallus gallus} (B:46-248)
Probab=5.76  E-value=2.4e+02  Score=12.30  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=23.2

Q ss_pred             HHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf             220014630000030345431784153397664
Q gi|254780888|r   16 VKMSKSGVISEKTGLMSAVIIEPPHIINIIKIM   48 (64)
Q Consensus        16 vkmsksgvisektglmsaviiepphiiniikim   48 (64)
                      .+|.-||.++...---..+-...+||.||=+..
T Consensus       140 g~~~lsG~ltrq~e~~~~~~~~~~Hi~NiG~lI  172 (203)
T 1izn_B          140 GTMNLGGSLTRQMEKDETVSDSSPHIANIGRLV  172 (203)
T ss_dssp             EEEEEEEEEEEEEEEEEECCSSSCHHHHHHHHH
T ss_pred             CEEECCCEEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             406325135651001206789865999999999


No 6  
>>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} (B:504-528,B:910-985)
Probab=5.70  E-value=2.3e+02  Score=12.40  Aligned_cols=13  Identities=54%  Similarity=0.621  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             1533976642352
Q gi|254780888|r   40 HIINIIKIMNIIM   52 (64)
Q Consensus        40 hiiniikimniim   52 (64)
                      .|-.||.||||--
T Consensus        12 ~~~~~~~~~~~~~   24 (101)
T 1ej6_B           12 QISQIIRIMNIGN   24 (101)
T ss_dssp             HHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999998851356


No 7  
>>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} (A:552-640,A:677-763)
Probab=5.41  E-value=2.5e+02  Score=12.27  Aligned_cols=14  Identities=29%  Similarity=0.729  Sum_probs=10.6

Q ss_pred             CCCCCCCEEEEEEC
Q ss_conf             00000303454317
Q gi|254780888|r   24 ISEKTGLMSAVIIE   37 (64)
Q Consensus        24 isektglmsaviie   37 (64)
                      -|+..||.||-+++
T Consensus        74 ~~~~~gl~saq~l~   87 (176)
T 1lns_A           74 LNDTKGFLSAQILD   87 (176)
T ss_dssp             ESSSCCEEEEEEEE
T ss_pred             ECCCCCEEEEEEEE
T ss_conf             77987089999999


No 8  
>>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} (A:)
Probab=5.33  E-value=1.5e+02  Score=13.41  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=18.2

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf             11033200232220014630000
Q gi|254780888|r    5 PIHAMDMGRTVVKMSKSGVISEK   27 (64)
Q Consensus         5 pihamdmgrtvvkmsksgvisek   27 (64)
                      ..|.+-.|+.|+..||.|---|-
T Consensus        13 AlH~LltGk~vvsv~kdGr~vey   35 (68)
T 1hyw_A           13 ALHDLMTGKRVATVQKDGRRVEF   35 (68)
T ss_dssp             HHHHHTTSCCCEEEECSSCEEEE
T ss_pred             HHHHHHCCCEEEEEECCCCEEEE
T ss_conf             99987507666756217818898


No 9  
>>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Aeropyrum pernix} (A:233-338)
Probab=4.98  E-value=1.8e+02  Score=12.95  Aligned_cols=5  Identities=100%  Similarity=1.006  Sum_probs=0.0

Q ss_pred             HHCCC
Q ss_conf             20014
Q gi|254780888|r   17 KMSKS   21 (64)
Q Consensus        17 kmsks   21 (64)
                      |||||
T Consensus         6 KMSkS   10 (106)
T 2cya_A            6 KMSKS   10 (106)
T ss_dssp             BCCSS
T ss_pred             CCCCC
T ss_conf             65568


No 10 
>>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} (B:209-267,B:325-400)
Probab=4.52  E-value=1.9e+02  Score=12.79  Aligned_cols=11  Identities=36%  Similarity=0.748  Sum_probs=0.0

Q ss_pred             CCCCHHHHHHH
Q ss_conf             21103320023
Q gi|254780888|r    4 RPIHAMDMGRT   14 (64)
Q Consensus         4 rpihamdmgrt   14 (64)
                      .|+||.|..++
T Consensus        50 qP~hafD~~kt   60 (135)
T 1b7y_B           50 QPMHAFDLRFR   60 (135)
T ss_dssp             CCCEEEEGGGC
T ss_pred             CCCCCCCCCCH
T ss_conf             00123432110


Done!