HHsearch alignment for GI: 254780889 and conserved domain: COG1304

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism].
Probab=99.48  E-value=4.3e-12  Score=106.16  Aligned_cols=143  Identities=29%  Similarity=0.348  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             99999999985798724514646999999998548758996102787665310001574310037889998622698199
Q gi|254780889|r  261 VLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIV  340 (493)
Q Consensus       261 ~~~~i~~~k~~~~~~~ii~GNv~t~~~~~~l~~~Gad~ikvGig~Gs~CtTr~~~g~g~pq~~av~~~~~~~~~~~~~ii  340 (493)
T Consensus       206 ~ked~~~i~~~~~-~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhgg------rqlD~g~st~~~L~ei~~av~~~-~~vi  277 (360)
T COG1304         206 SKEDGAGISKEWA-GPLVLKGILAPEDAAGAGGTGADGIEVSNHGG------RQLDWGISTADSLPEIVEAVGDR-IEVI  277 (360)
T ss_pred             CHHHHHHHHHHCC-CCHHHHCCCCHHHHHHHCCCCCEEEEEECCCC------CCCCCCCCHHHHHHHHHHHHCCC-EEEE
T ss_conf             3777767877507-75877478978888763368822899976787------40257877699999999971887-1799


Q ss_pred             EECCCCCHHHHEEEEEECCCEEEECCHHHCCCCCCCCEEEECCEEEEEEECCCCHHHHHHCCHHHHCCCCCCCCCCEECC
Q ss_conf             72654377762133671487899323010121677644873680588873320068875221222101233343310045
Q gi|254780889|r  341 ADGGIRFSGDIAKAIAAGSACVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPE  420 (493)
Q Consensus       341 adGGi~~~gdi~kAla~GA~~VM~G~~~agt~Espg~~~~~~g~~~K~yrGm~S~~A~~~~~~~ry~~~~~~~~~k~v~e  420 (493)
T Consensus       278 ~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~---------------------------------------------~~  312 (360)
T COG1304         278 ADGGIRSGLDVAKALALGADAVGIGRPFLYGLA---------------------------------------------AG  312 (360)
T ss_pred             ECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------------------------------HC
T ss_conf             638878778999999937765452599999998---------------------------------------------55


Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCE
Q ss_conf             4026621057589989999999998555157587768973759
Q gi|254780889|r  421 GIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKAN  463 (493)
Q Consensus       421 Gv~~~v~~~G~~~~~~~~~~~glrs~~~y~G~~~i~e~~~~~~  463 (493)
T Consensus       313 g~~G-------V~~~le~~~~El~~~M~L~G~~~i~el~~~~l  348 (360)
T COG1304         313 GEAG-------VERVLEIIRKELKIAMALTGAKNIEELKRVPL  348 (360)
T ss_pred             CHHH-------HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCE
T ss_conf             6878-------99999999999999997428881999655736