HHsearch alignment for GI: 254780889 and conserved domain: TIGR01108
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=94.11 E-value=0.21 Score=29.45 Aligned_cols=210 Identities=22% Similarity=0.358 Sum_probs=124.7
Q ss_pred CCCHHHHHHHHHHHCCC---CEEEECCCCEEEEEEEEHH-------H--HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 54303456566760504---1678668860278872354-------5--0014344672440026786325730358999
Q gi|254780889|r 108 YATLADALALMKKYSIS---GIPVVESDVGKLVGILTNR-------D--VRFASNAQQAVGELMTRNLITVKKTVNLENA 175 (493)
Q Consensus 108 d~TI~ea~~lm~~~~is---~iPVVD~~~gkLiGIVT~r-------D--ir~~~~~~~~V~eiMt~~litv~~~~~l~eA 175 (493)
T Consensus 3 Dv~LRDaHQSL~ATRmRteDMLPi~~~L--D~vGfwSLEvWGGATFDaC~RFL~E-----------D-----PW~RLR~l 64 (616)
T TIGR01108 3 DVVLRDAHQSLIATRMRTEDMLPILEKL--DDVGFWSLEVWGGATFDACIRFLNE-----------D-----PWERLREL 64 (616)
T ss_pred EEEECCHHHHHHHHHCCHHHHHHHHHHH--HHCCCEEEEECCCHHHHHHHHHCCC-----------C-----HHHHHHHH
T ss_conf 0135206776675305731368999875--0249556520244105578442488-----------8-----55899999
Q ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEECCCHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHH-HHHHHHCCCCEE-EEEC
Q ss_conf 99998655330645747997868898021000101742232656876555665137015678-999873136669-9824
Q gi|254780889|r 176 KALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQLNPNATKDSKGRLRVAAAVSVAKDIADR-VGPLFDVNVDLV-VVDT 253 (493)
Q Consensus 176 ~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~~~~p~A~~D~~grL~VgAAIg~~~d~~eR-a~~LveaGvDvi-viD~ 253 (493)
T Consensus 65 k~~~pnT~L~MLL---RGQNLlG---------YRHYAD-------------------DVVe~FV~~a~~NG~DVFRiFDA 113 (616)
T TIGR01108 65 KKALPNTKLQMLL---RGQNLLG---------YRHYAD-------------------DVVEAFVKKAVENGLDVFRIFDA 113 (616)
T ss_pred HHHCCCCCHHHHH---CCCCCCC---------CCCCCH-------------------HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9735787512342---0454234---------415843-------------------68999999999759808995124
Q ss_pred CCCHHHHHHHHHHHHHHHCC-CCCE-E---CCCCCCHHHH----HHHHHCCCCEEEEEECCCCCCCCCHHCCCCCCCCHH
Q ss_conf 84113889999999998579-8724-5---1464699999----999854875899610278766531000157431003
Q gi|254780889|r 254 AHGHSQKVLDAVVQIKKNFP-SLLV-M---AGNIATAEGA----LALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSA 324 (493)
Q Consensus 254 ahGh~~~~~~~i~~~k~~~~-~~~i-i---~GNv~t~~~~----~~l~~~Gad~ikvGig~Gs~CtTr~~~g~g~pq~~a 324 (493)
T Consensus 114 LN-D~RNl~~ai~a~Kk~g~dHvQg~iSYTtSPvHTl~~yl~la~~L~~~G~DSI---------~I-KDMaGlLTP~~A- 181 (616)
T TIGR01108 114 LN-DPRNLQKAIEAAKKHGADHVQGAISYTTSPVHTLEKYLELAKELLEMGVDSI---------CI-KDMAGLLTPKVA- 181 (616)
T ss_pred CC-CHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEE---------EE-ECCCCCCCHHHH-
T ss_conf 58-8778999999999738978999971246843678889999999998188605---------52-020046441589-
Q ss_pred HHHHHHHH-HCCC-CEEE----EECCCCCHHHHEEEEEECCCEE--EECCHHHCCCCCCCCEEE
Q ss_conf 78899986-2269-8199----7265437776213367148789--932301012167764487
Q gi|254780889|r 325 IMSVVEVA-ERAG-VAIV----ADGGIRFSGDIAKAIAAGSACV--MIGSLLAGTDESPGDIFL 380 (493)
Q Consensus 325 v~~~~~~~-~~~~-~~ii----adGGi~~~gdi~kAla~GA~~V--M~G~~~agt~Espg~~~~ 380 (493)
T Consensus 182 -YELV~alK~~~~n~pvhLH~H~TtGmA~~-AllkA~EAG~d~iDTAisS~S~gtSHPptE~lv 243 (616)
T TIGR01108 182 -YELVSALKKEFGNLPVHLHSHATTGMAEM-ALLKAIEAGADMIDTAISSMSGGTSHPPTETLV 243 (616)
T ss_pred -HHHHHHHHHHCCCEEEEEECCCCHHHHHH-HHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHH
T ss_conf -99999997423974688632472337999-999888707880020055234788887479999