HHsearch alignment for GI: 254780889 and conserved domain: TIGR03520
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.43 E-value=2.2e-12 Score=108.27 Aligned_cols=144 Identities=17% Similarity=0.260 Sum_probs=116.3
Q ss_pred CCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCC-----CEEC--CCEEEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 3688899999977987999789898999999998742238-----8152--87899465430345656676050416786
Q gi|254780889|r 57 VTDSRLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFES-----GMVV--NPVTISPYATLADALALMKKYSISGIPVV 129 (493)
Q Consensus 57 VTe~~MAiamA~~GGiGvIHrn~sie~qa~~V~kVKr~e~-----gmI~--dPVti~pd~TI~ea~~lm~~~~is~iPVV 129 (493)
T Consensus 159 ~eel~~~i~~~~~~g~--~------~eE~~~i~~vl~l~~~~v~eiMtPr~~v~~l~~~~~~~e~~~~~~~~~~SR~PV~ 230 (408)
T TIGR03520 159 VDQLSQALELTDEEDT--T------KEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVY 230 (408)
T ss_pred HHHHHHHHHHHHCCCC--C------HHHHHHHHHHHCCCCCEEHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999999985403487--7------8999999998275998903423545795884064438999999985798722266
Q ss_pred CCCCEEEEEEEEHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 68860278872354500-14344672440026786325730358999999986553306457479978688980210001
Q gi|254780889|r 130 ESDVGKLVGILTNRDVR-FASNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 130 D~~~gkLiGIVT~rDir-~~~~~~~~V~eiMt~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 231 ~~~~D~iiGiv~~kDll~~~~~~~~~~~~~~-r~~~~Vpe~~~~~~lL~~~~~~~~~~AiVvDEyG~~~GiVTlEDilEe 309 (408)
T TIGR03520 231 KETIDNITGVLYIKDLLPHLNKKNFDWQSLL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEE 309 (408)
T ss_pred CCCCCCEEEEEEHHHHHHHHHCCCCCHHHHH-HHCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 5898761799779899878736999889986-321489997788999999986387489999899987899888998999
Q ss_pred C
Q ss_conf 0
Q gi|254780889|r 209 Q 209 (493)
Q Consensus 209 ~ 209 (493)
T Consensus 310 i 310 (408)
T TIGR03520 310 I 310 (408)
T ss_pred H
T ss_conf 9