HHsearch alignment for GI: 254780889 and conserved domain: cd02808
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.79 E-value=5.2e-08 Score=76.88 Aligned_cols=190 Identities=22% Similarity=0.330 Sum_probs=114.0
Q ss_pred HHCCCCEEEEECCC---CHHHHHHHHHHHHHHHCCCCC----EECCCCCCHHHHHHHH-HCCCCEEEE-EECCCCCCCC-
Q ss_conf 73136669982484---113889999999998579872----4514646999999998-548758996-1027876653-
Q gi|254780889|r 242 FDVNVDLVVVDTAH---GHSQKVLDAVVQIKKNFPSLL----VMAGNIATAEGALALI-DAGADIIKV-GIGPGSICTT- 311 (493)
Q Consensus 242 veaGvDviviD~ah---Gh~~~~~~~i~~~k~~~~~~~----ii~GNv~t~~~~~~l~-~~Gad~ikv-Gig~Gs~CtT- 311 (493)
T Consensus 180 ~~~G~d~iSP-~~h~~i~s~edl~~~I~~LR~~~~~kpVgvKl~~g~--~~~~l~~~~~~~~~DfItIDG~eGGTGAaP~ 256 (392)
T cd02808 180 IPPGVDLISP-PPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGH--GEGDIAAGVAAAGADFITIDGAEGGTGAAPL 256 (392)
T ss_pred CCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC--CHHHHHHHHHHCCCCEEEEECCCCCCCCCHH
T ss_conf 9999887799-765666999999999999997289980799968889--8899999999647999996079987541429
Q ss_pred CHHCCCCCCCCHHHHHHHHHHHCCC----CEEEEECCCCCHHHHEEEEEECCCEEEECCH--HH-CCCCCCCCEEEECCE
Q ss_conf 1000157431003788999862269----8199726543777621336714878993230--10-121677644873680
Q gi|254780889|r 312 RVVTGVGCPQLSAIMSVVEVAERAG----VAIVADGGIRFSGDIAKAIAAGSACVMIGSL--LA-GTDESPGDIFLYQGR 384 (493)
Q Consensus 312 r~~~g~g~pq~~av~~~~~~~~~~~----~~iiadGGi~~~gdi~kAla~GA~~VM~G~~--~a-gt~Espg~~~~~~g~ 384 (493)
T Consensus 257 ~~~d~~GlP~~~~l~~~~~~L~~~glr~~i~liasGgl~t~~di~kalaLGAD~v~~a~~~m~alGCiq~~-~--C~~~~ 333 (392)
T cd02808 257 TFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQAR-K--CHTNT 333 (392)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHCHHHHHHHHCHHHH-H--HCCCC
T ss_conf 99974997389999999999997699676379963885747899999986756451056999987479976-5--05998
Q ss_pred EEEEEECCCCHHHHHHCCHHHHCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 5888733200688752212221012333433100454026621057589989999999998555157587768973
Q gi|254780889|r 385 SFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQK 460 (493)
Q Consensus 385 ~~K~yrGm~S~~A~~~~~~~ry~~~~~~~~~k~v~eGv~~~v~~~G~~~~~~~~~~~glrs~~~y~G~~~i~e~~~ 460 (493)
T Consensus 334 ---CP~GiaTqd~-------~l-~~-----~l~~~~~a~-------rv~ny~~~~~~el~~~~~a~G~~~~~~l~r 386 (392)
T cd02808 334 ---CPVGVATQDP-------EL-RR-----RLDVEGKAE-------RVANYLKSLAEELRELAAALGKRSLELLGR 386 (392)
T ss_pred ---CCCCCCCCCH-------HH-HC-----CCCCCCHHH-------HHHHHHHHHHHHHHHHHHHHCCCCHHHCCH
T ss_conf ---9961113798-------88-41-----468654699-------999999999999999999857999478898