HHsearch alignment for GI: 254780889 and conserved domain: cd02808

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.79  E-value=5.2e-08  Score=76.88  Aligned_cols=190  Identities=22%  Similarity=0.330  Sum_probs=114.0

Q ss_pred             HHCCCCEEEEECCC---CHHHHHHHHHHHHHHHCCCCC----EECCCCCCHHHHHHHH-HCCCCEEEE-EECCCCCCCC-
Q ss_conf             73136669982484---113889999999998579872----4514646999999998-548758996-1027876653-
Q gi|254780889|r  242 FDVNVDLVVVDTAH---GHSQKVLDAVVQIKKNFPSLL----VMAGNIATAEGALALI-DAGADIIKV-GIGPGSICTT-  311 (493)
Q Consensus       242 veaGvDviviD~ah---Gh~~~~~~~i~~~k~~~~~~~----ii~GNv~t~~~~~~l~-~~Gad~ikv-Gig~Gs~CtT-  311 (493)
T Consensus       180 ~~~G~d~iSP-~~h~~i~s~edl~~~I~~LR~~~~~kpVgvKl~~g~--~~~~l~~~~~~~~~DfItIDG~eGGTGAaP~  256 (392)
T cd02808         180 IPPGVDLISP-PPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGH--GEGDIAAGVAAAGADFITIDGAEGGTGAAPL  256 (392)
T ss_pred             CCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC--CHHHHHHHHHHCCCCEEEEECCCCCCCCCHH
T ss_conf             9999887799-765666999999999999997289980799968889--8899999999647999996079987541429


Q ss_pred             CHHCCCCCCCCHHHHHHHHHHHCCC----CEEEEECCCCCHHHHEEEEEECCCEEEECCH--HH-CCCCCCCCEEEECCE
Q ss_conf             1000157431003788999862269----8199726543777621336714878993230--10-121677644873680
Q gi|254780889|r  312 RVVTGVGCPQLSAIMSVVEVAERAG----VAIVADGGIRFSGDIAKAIAAGSACVMIGSL--LA-GTDESPGDIFLYQGR  384 (493)
Q Consensus       312 r~~~g~g~pq~~av~~~~~~~~~~~----~~iiadGGi~~~gdi~kAla~GA~~VM~G~~--~a-gt~Espg~~~~~~g~  384 (493)
T Consensus       257 ~~~d~~GlP~~~~l~~~~~~L~~~glr~~i~liasGgl~t~~di~kalaLGAD~v~~a~~~m~alGCiq~~-~--C~~~~  333 (392)
T cd02808         257 TFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQAR-K--CHTNT  333 (392)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHCHHHHHHHHCHHHH-H--HCCCC
T ss_conf             99974997389999999999997699676379963885747899999986756451056999987479976-5--05998


Q ss_pred             EEEEEECCCCHHHHHHCCHHHHCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             5888733200688752212221012333433100454026621057589989999999998555157587768973
Q gi|254780889|r  385 SFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQK  460 (493)
Q Consensus       385 ~~K~yrGm~S~~A~~~~~~~ry~~~~~~~~~k~v~eGv~~~v~~~G~~~~~~~~~~~glrs~~~y~G~~~i~e~~~  460 (493)
T Consensus       334 ---CP~GiaTqd~-------~l-~~-----~l~~~~~a~-------rv~ny~~~~~~el~~~~~a~G~~~~~~l~r  386 (392)
T cd02808         334 ---CPVGVATQDP-------EL-RR-----RLDVEGKAE-------RVANYLKSLAEELRELAAALGKRSLELLGR  386 (392)
T ss_pred             ---CCCCCCCCCH-------HH-HC-----CCCCCCHHH-------HHHHHHHHHHHHHHHHHHHHCCCCHHHCCH
T ss_conf             ---9961113798-------88-41-----468654699-------999999999999999999857999478898