HHsearch alignment for GI: 254780889 and conserved domain: cd04592
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.38 E-value=1.8e-12 Score=108.81 Aligned_cols=93 Identities=33% Similarity=0.386 Sum_probs=76.9
Q ss_pred CCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC-CCC---------------CCCCCCCCCCC----
Q ss_conf 8789946543034565667605041678668860278872354500-143---------------44672440026----
Q gi|254780889|r 101 NPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR-FAS---------------NAQQAVGELMT---- 160 (493)
Q Consensus 101 dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir-~~~---------------~~~~~V~eiMt---- 160 (493)
T Consensus 2 ~~vtV~p~ttv~EA~~lM~~~~~~~~~VVD~~-~~L~GIvt~gDi~R~~~~~~~~~~~~~~~~~~~~~~~vs~v~t~~~~ 80 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CCEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf 45998999859999999998188657998389-97899978799999987623564563200012444323345642036
Q ss_pred -----CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf -----7863257303589999999865533064574799
Q gi|254780889|r 161 -----RNLITVKKTVNLENAKALLHQHRIEKLLVVDDDG 194 (493)
Q Consensus 161 -----~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g 194 (493)
T Consensus 81 ~~~~~~~~~tv~pd~~l~~a~~lM~~~~i~~LPVV~~~~ 119 (133)
T cd04592 81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred ECCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEECCC
T ss_conf 255110038978999999999999986988587670776